Wall clock time and date at job start Tue Mar 31 2020 05:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 119.99852 * 2 1 4 4 H 1.48496 * 109.47399 * 270.00120 * 3 2 1 5 5 H 1.48501 * 109.47182 * 30.00869 * 3 2 1 6 6 H 1.48503 * 109.46937 * 150.00304 * 3 2 1 7 7 C 1.37882 * 120.00410 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99482 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00319 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47073 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46936 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.46962 * 180.02562 * 11 10 9 13 13 C 1.39045 * 119.99857 * 180.02562 * 12 11 10 14 14 C 1.39480 * 120.16043 * 359.97438 * 13 12 11 15 15 C 1.38556 * 117.90706 * 180.02562 * 14 13 12 16 16 C 1.38824 * 118.03998 * 0.02562 * 15 14 13 17 17 S 1.76194 * 119.99412 * 180.02562 * 16 15 14 18 18 N 1.65608 * 107.21858 * 269.97721 * 17 16 15 19 19 O 1.42106 * 106.40370 * 23.51476 * 17 16 15 20 20 O 1.42096 * 106.40433 * 156.43835 * 17 16 15 21 21 N 1.31787 * 120.01225 * 359.97438 * 16 15 14 22 22 N 1.28354 * 122.28623 * 359.97438 * 21 16 15 23 23 H 0.96998 * 120.00374 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46541 * 60.00039 * 9 7 2 25 25 H 1.08996 * 109.47594 * 300.00473 * 9 7 2 26 26 H 1.09002 * 109.46901 * 60.00262 * 10 9 7 27 27 H 1.09005 * 109.47308 * 300.00480 * 10 9 7 28 28 H 1.09002 * 109.47318 * 60.00265 * 11 10 9 29 29 H 1.09005 * 109.47307 * 300.00227 * 11 10 9 30 30 H 0.97005 * 120.00077 * 359.97438 * 12 11 10 31 31 H 1.08004 * 121.04712 * 0.04698 * 14 13 12 32 32 H 1.08000 * 120.98222 * 180.02562 * 15 14 13 33 33 H 0.96999 * 119.99666 * 0.02562 * 18 17 16 34 34 H 0.96996 * 120.00104 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0009 12 7 6.0399 -4.0177 -0.0014 13 6 7.4069 -4.2717 -0.0009 14 6 8.3163 -3.2140 -0.0005 15 6 9.6675 -3.5205 -0.0006 16 6 10.0329 -4.8598 -0.0016 17 16 11.7369 -5.3080 -0.0011 18 7 12.2117 -5.4318 -1.5828 19 8 12.4426 -4.2016 0.5443 20 8 11.8069 -6.6189 0.5426 21 7 9.1054 -5.7961 -0.0020 22 7 7.8520 -5.5196 -0.0009 23 1 -0.4850 0.8400 0.0004 24 1 3.8751 -0.6804 0.8889 25 1 3.8746 -0.6799 -0.8910 26 1 3.6579 -3.1505 -0.8908 27 1 3.6585 -3.1502 0.8892 28 1 5.9149 -2.1226 0.8890 29 1 5.9149 -2.1226 -0.8910 30 1 5.4095 -4.7550 -0.0014 31 1 7.9777 -2.1884 0.0002 32 1 10.4145 -2.7406 0.0001 33 1 11.5749 -5.2635 -2.2949 34 1 13.1267 -5.6719 -1.7971 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157641851.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:41 Heat of formation + Delta-G solvation = -23.581713 kcal Electronic energy + Delta-G solvation = -19370.081709 eV Core-core repulsion = 16044.315301 eV Total energy + Delta-G solvation = -3325.766408 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.089 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.29075 -37.44687 -37.29248 -36.12007 -34.18166 -33.60463 -33.47768 -32.30028 -30.62979 -27.39409 -25.39403 -24.19441 -22.66743 -20.68117 -20.09818 -18.99262 -18.32946 -17.75925 -17.57774 -16.89101 -16.34940 -15.81327 -15.73510 -15.05486 -14.90833 -14.59137 -14.17632 -13.94264 -12.96488 -12.85424 -12.75918 -12.49937 -12.35720 -12.23020 -12.14548 -11.50066 -11.35376 -11.12415 -10.96596 -10.86565 -10.70919 -10.27509 -10.12992 -10.05404 -9.89503 -9.40388 -8.69879 -8.54115 -6.19300 -4.19602 -0.01621 0.37453 0.49808 2.59719 2.74986 3.02793 3.18239 3.26620 3.27516 3.40200 3.78048 4.15459 4.26802 4.30204 4.55718 4.75496 5.02358 5.10302 5.12327 5.20205 5.33891 5.52598 5.57798 5.60102 6.09624 6.11844 6.50836 6.59061 6.62078 6.99066 7.12788 7.15039 7.59500 8.28052 8.35448 8.84112 9.41447 10.93871 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.043411 B = 0.002668 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.838880 B =10493.521086 C =10939.026515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.114 4.114 11 C 0.108 3.892 12 N -0.688 5.688 13 C 0.384 3.616 14 C -0.195 4.195 15 C -0.003 4.003 16 C -0.580 4.580 17 S 2.729 3.271 18 N -1.248 6.248 19 O -0.959 6.959 20 O -0.943 6.943 21 N -0.086 5.086 22 N -0.312 5.312 23 H 0.265 0.735 24 H 0.019 0.981 25 H 0.015 0.985 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.415 0.585 31 H 0.160 0.840 32 H 0.166 0.834 33 H 0.417 0.583 34 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.483 -6.874 -3.849 24.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.565 4.565 8 H 0.091 0.909 9 C -0.047 4.047 10 C -0.152 4.152 11 C -0.015 4.015 12 N -0.314 5.314 13 C 0.141 3.859 14 C -0.229 4.229 15 C -0.031 4.031 16 C -0.811 4.811 17 S 2.812 3.188 18 N -0.924 5.924 19 O -0.947 6.947 20 O -0.932 6.932 21 N 0.065 4.935 22 N -0.171 5.171 23 H 0.075 0.925 24 H 0.037 0.963 25 H 0.033 0.967 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.253 0.747 31 H 0.177 0.823 32 H 0.183 0.817 33 H 0.244 0.756 34 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 23.252 -8.169 -2.883 24.813 hybrid contribution -0.334 2.425 -0.712 2.549 sum 22.918 -5.744 -3.595 23.898 Atomic orbital electron populations 1.69898 1.06349 1.27129 1.50381 1.25038 0.94764 0.99260 0.94361 0.86764 0.80290 0.83563 0.78540 1.20215 1.21242 1.19041 1.21047 0.89109 0.94642 1.51707 0.90929 1.19493 0.97628 0.90889 0.96644 1.21727 0.89414 1.01576 1.02504 1.22044 0.97873 0.79727 1.01827 1.45159 1.01749 1.10443 1.74095 1.20379 0.87464 0.91713 0.86359 1.21924 0.92999 1.00879 1.07122 1.21891 0.97269 0.95550 0.88425 1.34084 1.24734 0.99290 1.22997 1.01120 0.71490 0.73988 0.72233 1.52988 1.22489 1.90341 1.26552 1.93628 1.69541 1.55005 1.76575 1.93618 1.84901 1.38539 1.76173 1.72905 0.94808 1.28152 0.97663 1.73106 1.07566 1.16217 1.20246 0.92524 0.96262 0.96704 0.91596 0.91564 0.91141 0.91166 0.74725 0.82284 0.81665 0.75616 0.74769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.66 13.96 55.43 0.77 -25.89 16 2 C 0.07 1.87 5.47 -17.82 -0.10 1.78 16 3 Si 0.88 20.36 27.47 -169.99 -4.67 15.69 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -5.78 6.54 56.52 0.37 -5.41 16 7 C -0.53 -14.00 9.66 -34.44 -0.33 -14.33 16 8 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 9 C -0.01 -0.18 4.04 -27.88 -0.11 -0.29 16 10 C -0.11 -1.84 5.27 -26.73 -0.14 -1.98 16 11 C 0.11 1.33 4.92 -4.04 -0.02 1.31 16 12 N -0.69 -8.08 5.73 -60.29 -0.35 -8.43 16 13 C 0.38 4.75 7.75 -154.77 -1.20 3.55 16 14 C -0.20 -1.99 9.42 -39.00 -0.37 -2.36 16 15 C 0.00 -0.03 9.65 -39.25 -0.38 -0.41 16 16 C -0.58 -6.27 6.91 -17.35 -0.12 -6.39 16 17 S 2.73 25.00 6.35 -107.50 -0.68 24.32 16 18 N -1.25 -6.12 9.55 60.35 0.58 -5.54 16 19 O -0.96 -10.58 17.33 -57.17 -0.99 -11.57 16 20 O -0.94 -12.28 17.87 -57.17 -1.02 -13.30 16 21 N -0.09 -1.17 11.27 31.22 0.35 -0.81 16 22 N -0.31 -4.40 11.54 31.23 0.36 -4.04 16 23 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 25 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.07 0.82 7.96 -51.93 -0.41 0.41 16 29 H 0.07 0.79 7.97 -51.93 -0.41 0.38 16 30 H 0.42 4.65 8.60 -40.82 -0.35 4.30 16 31 H 0.16 1.27 6.84 -52.48 -0.36 0.92 16 32 H 0.17 1.04 7.69 -52.49 -0.40 0.63 16 33 H 0.42 1.29 8.92 -34.47 -0.31 0.98 16 34 H 0.42 1.21 8.96 -34.48 -0.31 0.90 16 LS Contribution 309.19 15.07 4.66 4.66 Total: -1.00 -35.64 309.19 -7.51 -43.15 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -3.76 Total: 0.91 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -2.77 Total: -19.13 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 1.72 Total: -44.72 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -2.01 Total: -24.88 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.67 Total: 15.69 kcal Atomic # 16 Polarization: 25.00 SS G_CDS: -0.68 Total: 24.32 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -35.64 -7.51 -43.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641851.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.567 kcal (2) G-P(sol) polarization free energy of solvation -35.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds