Wall clock time and date at job start Tue Mar 31 2020 05:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 119.99852 * 2 1 4 4 H 1.48496 * 109.47399 * 270.00120 * 3 2 1 5 5 H 1.48501 * 109.47182 * 30.00869 * 3 2 1 6 6 H 1.48503 * 109.46937 * 150.00304 * 3 2 1 7 7 C 1.37882 * 120.00410 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99482 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00319 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47073 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46936 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.46962 * 180.02562 * 11 10 9 13 13 C 1.39045 * 119.99857 * 180.02562 * 12 11 10 14 14 C 1.39480 * 120.16043 * 359.97438 * 13 12 11 15 15 C 1.38556 * 117.90706 * 180.02562 * 14 13 12 16 16 C 1.38824 * 118.03998 * 0.02562 * 15 14 13 17 17 S 1.76194 * 119.99412 * 180.02562 * 16 15 14 18 18 N 1.65608 * 107.21858 * 269.97721 * 17 16 15 19 19 O 1.42106 * 106.40370 * 23.51476 * 17 16 15 20 20 O 1.42096 * 106.40433 * 156.43835 * 17 16 15 21 21 N 1.31787 * 120.01225 * 359.97438 * 16 15 14 22 22 N 1.28354 * 122.28623 * 359.97438 * 21 16 15 23 23 H 0.96998 * 120.00374 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46541 * 60.00039 * 9 7 2 25 25 H 1.08996 * 109.47594 * 300.00473 * 9 7 2 26 26 H 1.09002 * 109.46901 * 60.00262 * 10 9 7 27 27 H 1.09005 * 109.47308 * 300.00480 * 10 9 7 28 28 H 1.09002 * 109.47318 * 60.00265 * 11 10 9 29 29 H 1.09005 * 109.47307 * 300.00227 * 11 10 9 30 30 H 0.97005 * 120.00077 * 359.97438 * 12 11 10 31 31 H 1.08004 * 121.04712 * 0.04698 * 14 13 12 32 32 H 1.08000 * 120.98222 * 180.02562 * 15 14 13 33 33 H 0.96999 * 119.99666 * 0.02562 * 18 17 16 34 34 H 0.96996 * 120.00104 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0009 12 7 6.0399 -4.0177 -0.0014 13 6 7.4069 -4.2717 -0.0009 14 6 8.3163 -3.2140 -0.0005 15 6 9.6675 -3.5205 -0.0006 16 6 10.0329 -4.8598 -0.0016 17 16 11.7369 -5.3080 -0.0011 18 7 12.2117 -5.4318 -1.5828 19 8 12.4426 -4.2016 0.5443 20 8 11.8069 -6.6189 0.5426 21 7 9.1054 -5.7961 -0.0020 22 7 7.8520 -5.5196 -0.0009 23 1 -0.4850 0.8400 0.0004 24 1 3.8751 -0.6804 0.8889 25 1 3.8746 -0.6799 -0.8910 26 1 3.6579 -3.1505 -0.8908 27 1 3.6585 -3.1502 0.8892 28 1 5.9149 -2.1226 0.8890 29 1 5.9149 -2.1226 -0.8910 30 1 5.4095 -4.7550 -0.0014 31 1 7.9777 -2.1884 0.0002 32 1 10.4145 -2.7406 0.0001 33 1 11.5749 -5.2635 -2.2949 34 1 13.1267 -5.6719 -1.7971 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157641851.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:40 Heat of formation + Delta-G solvation = -54.622398 kcal Electronic energy + Delta-G solvation = -19371.427734 eV Core-core repulsion = 16044.315301 eV Total energy + Delta-G solvation = -3327.112433 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.089 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.15644 -38.33383 -38.23928 -36.97393 -35.73640 -34.35472 -34.05387 -33.94423 -31.83655 -28.80081 -26.38318 -25.24969 -23.89745 -22.14317 -20.85603 -19.75140 -19.22064 -18.87304 -18.43168 -18.37997 -16.96376 -16.77965 -16.57021 -16.39880 -15.98842 -15.72940 -15.37555 -14.80964 -14.64386 -14.14151 -13.88821 -13.59112 -13.27303 -13.21420 -13.10478 -12.91055 -12.76083 -12.29562 -12.03486 -11.82374 -11.71983 -11.58203 -11.44976 -11.36083 -11.34614 -10.96308 -10.76401 -9.42276 -8.29081 -6.34623 -0.75692 -0.45704 -0.29962 1.38871 1.41277 1.52178 1.72500 2.01618 2.22385 2.37263 2.67667 2.98129 3.07169 3.38492 3.48236 3.81330 3.92328 4.03923 4.14301 4.30031 4.45042 4.60635 4.74383 4.83976 4.90658 4.99053 5.27064 5.43455 5.54545 5.61878 5.71651 6.23321 6.27610 6.33322 6.75082 7.30520 7.40271 8.87824 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.043411 B = 0.002668 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.838880 B =10493.521086 C =10939.026515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.002 4.002 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.291 1.291 6 H -0.235 1.235 7 C -0.536 4.536 8 H 0.028 0.972 9 C -0.008 4.008 10 C -0.106 4.106 11 C 0.122 3.878 12 N -0.690 5.690 13 C 0.370 3.630 14 C -0.191 4.191 15 C 0.000 4.000 16 C -0.576 4.576 17 S 2.757 3.243 18 N -1.229 6.229 19 O -0.974 6.974 20 O -0.985 6.985 21 N -0.119 5.119 22 N -0.344 5.344 23 H 0.265 0.735 24 H 0.029 0.971 25 H 0.030 0.970 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.414 0.586 31 H 0.187 0.813 32 H 0.201 0.799 33 H 0.428 0.572 34 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.556 -5.011 -4.405 27.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.198 4.198 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.218 1.218 6 H -0.158 1.158 7 C -0.574 4.574 8 H 0.047 0.953 9 C -0.046 4.046 10 C -0.144 4.144 11 C -0.001 4.001 12 N -0.318 5.318 13 C 0.128 3.872 14 C -0.224 4.224 15 C -0.028 4.028 16 C -0.808 4.808 17 S 2.838 3.162 18 N -0.911 5.911 19 O -0.963 6.963 20 O -0.974 6.974 21 N 0.034 4.966 22 N -0.202 5.202 23 H 0.074 0.926 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.251 0.749 31 H 0.205 0.795 32 H 0.218 0.782 33 H 0.258 0.742 34 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 26.350 -6.348 -3.451 27.323 hybrid contribution -1.289 1.759 -0.570 2.253 sum 25.062 -4.590 -4.021 25.794 Atomic orbital electron populations 1.70083 1.08646 1.28230 1.52658 1.26124 0.95625 1.03962 0.94095 0.85594 0.79754 0.77629 0.79251 1.19089 1.21777 1.15811 1.21518 0.92481 0.92952 1.50498 0.95345 1.19443 0.93546 0.94107 0.97535 1.21487 0.92591 0.98508 1.01841 1.21817 0.94581 0.80226 1.03478 1.45007 1.01790 1.10189 1.74777 1.20520 0.87730 0.92005 0.86960 1.22289 0.92876 1.01511 1.05768 1.22335 0.97864 0.95523 0.87098 1.34338 1.24729 0.99987 1.21719 1.00169 0.70501 0.72775 0.72741 1.52558 1.23452 1.90001 1.25138 1.93607 1.69647 1.55292 1.77721 1.93575 1.85297 1.40632 1.77869 1.72844 0.95095 1.29472 0.99235 1.72998 1.08040 1.17637 1.21574 0.92585 0.95227 0.95172 0.92299 0.92535 0.89693 0.89257 0.74861 0.79539 0.78243 0.74189 0.73232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.39 13.96 21.45 0.30 -58.09 16 2 C 0.00 -0.09 5.47 84.66 0.46 0.37 16 3 Si 0.95 40.95 27.47 68.60 1.88 42.84 16 4 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.24 -8.86 6.54 99.48 0.65 -8.21 16 7 C -0.54 -28.89 9.66 25.60 0.25 -28.64 16 8 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 9 C -0.01 -0.33 4.04 29.85 0.12 -0.21 16 10 C -0.11 -3.28 5.27 30.59 0.16 -3.12 16 11 C 0.12 2.61 4.92 86.38 0.42 3.04 16 12 N -0.69 -15.00 5.73 -344.65 -1.97 -16.98 16 13 C 0.37 8.46 7.75 133.11 1.03 9.50 16 14 C -0.19 -3.22 9.42 22.65 0.21 -3.01 16 15 C 0.00 -0.01 9.65 22.49 0.22 0.21 16 16 C -0.58 -11.38 6.91 84.84 0.59 -10.80 16 17 S 2.76 45.86 6.35 -56.49 -0.36 45.51 16 18 N -1.23 -9.17 9.55 37.02 0.35 -8.82 16 19 O -0.97 -19.23 17.33 -128.00 -2.22 -21.45 16 20 O -0.98 -25.10 17.87 -128.00 -2.29 -27.39 16 21 N -0.12 -3.15 11.27 -55.16 -0.62 -3.77 16 22 N -0.34 -9.50 11.54 -55.10 -0.64 -10.13 16 23 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 24 H 0.03 1.13 7.20 -2.39 -0.02 1.11 16 25 H 0.03 1.12 7.57 -2.39 -0.02 1.10 16 26 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.08 1.61 7.96 -2.39 -0.02 1.60 16 29 H 0.09 1.61 7.97 -2.38 -0.02 1.60 16 30 H 0.41 9.04 8.60 -92.70 -0.80 8.25 16 31 H 0.19 2.04 6.84 -2.91 -0.02 2.02 16 32 H 0.20 1.58 7.69 -2.91 -0.02 1.56 16 33 H 0.43 1.52 8.92 -96.74 -0.86 0.66 16 34 H 0.43 1.43 8.96 -96.75 -0.87 0.56 16 Total: -1.00 -79.60 309.19 -3.50 -83.10 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -1.41 Total: 7.85 kcal Atomic # 6 Polarization: -36.12 SS G_CDS: 3.47 Total: -32.66 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -2.58 Total: -97.79 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: -4.51 Total: -48.84 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 1.88 Total: 42.84 kcal Atomic # 16 Polarization: 45.86 SS G_CDS: -0.36 Total: 45.51 kcal Total: -79.60 -3.50 -83.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641851.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.479 kcal (2) G-P(sol) polarization free energy of solvation -79.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds