Wall clock time and date at job start Tue Mar 31 2020 06:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34231 * 126.28169 * 2 1 4 4 H 0.97005 * 125.73677 * 359.95819 * 3 2 1 5 5 N 1.39930 * 108.52698 * 179.97438 * 3 2 1 6 6 C 1.30532 * 108.88996 * 359.97438 * 5 3 2 7 7 Cl 1.73606 * 126.00251 * 180.02562 * 6 5 3 8 8 C 1.38065 * 126.28229 * 179.68688 * 2 1 3 9 9 C 1.47393 * 126.42205 * 0.03137 * 8 2 1 10 10 O 1.21606 * 119.99704 * 90.00521 * 9 8 2 11 11 N 1.34771 * 119.99960 * 270.00137 * 9 8 2 12 12 C 1.46497 * 119.99973 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.47124 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.46849 * 180.02562 * 13 12 11 15 15 N 1.46503 * 109.47254 * 180.02562 * 14 13 12 16 16 C 1.36928 * 120.00301 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00093 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00051 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00168 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00013 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47562 * 59.99402 * 20 18 16 22 22 H 1.48498 * 109.46914 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46780 * 299.99400 * 20 18 16 24 24 H 1.09002 * 109.47152 * 90.02671 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.02772 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.02752 * 1 2 3 27 27 H 0.97003 * 120.00187 * 359.97438 * 11 9 8 28 28 H 1.09004 * 109.47132 * 300.00023 * 12 11 9 29 29 H 1.09004 * 109.47193 * 60.00298 * 12 11 9 30 30 H 1.08991 * 109.47078 * 299.99738 * 13 12 11 31 31 H 1.08995 * 109.47165 * 60.00157 * 13 12 11 32 32 H 1.09004 * 109.47216 * 299.99769 * 14 13 12 33 33 H 1.08995 * 109.47161 * 60.00091 * 14 13 12 34 34 H 0.97004 * 119.99318 * 0.02562 * 15 14 13 35 35 H 0.96995 * 120.00672 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0019 2.0047 -0.0006 5 7 3.6340 0.6554 0.0006 6 6 3.6599 -0.6497 0.0015 7 17 5.0843 -1.6422 0.0031 8 6 2.3240 -1.1129 0.0061 9 6 1.8858 -2.5202 0.0131 10 8 1.7057 -3.1061 -1.0371 11 7 1.6850 -3.1576 1.1835 12 6 1.2489 -4.5561 1.1905 13 6 1.0961 -5.0355 2.6355 14 6 0.6413 -6.4963 2.6427 15 7 0.4943 -6.9552 4.0262 16 6 0.0933 -8.2391 4.2828 17 1 -0.1143 -8.9136 3.4653 18 6 -0.0453 -8.6740 5.5938 19 7 0.2091 -7.8525 6.5901 20 14 -0.5917 -10.4257 5.9438 21 1 0.3835 -11.3762 5.3518 22 1 -0.6622 -10.6381 7.4118 23 1 -1.9317 -10.6549 5.3462 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3633 0.8902 0.5134 26 1 -0.3633 -0.8898 0.5143 27 1 1.8291 -2.6903 2.0212 28 1 0.2912 -4.6407 0.6768 29 1 1.9905 -5.1705 0.6800 30 1 2.0535 -4.9509 3.1494 31 1 0.3543 -4.4211 3.1456 32 1 -0.3161 -6.5814 2.1285 33 1 1.3834 -7.1104 2.1327 34 1 0.6805 -6.3492 4.7605 35 1 0.1119 -8.1562 7.5062 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159553097.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:26 Heat of formation + Delta-G solvation = 31.820132 kcal Electronic energy + Delta-G solvation = -19340.864314 eV Core-core repulsion = 16015.456604 eV Total energy + Delta-G solvation = -3325.407710 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.91259 -39.27881 -37.13533 -35.98795 -34.30449 -33.13671 -32.20639 -31.46205 -29.51363 -27.91980 -25.35073 -23.20940 -22.34842 -21.99991 -21.17366 -19.87796 -18.27013 -17.09127 -16.60993 -16.20594 -15.62468 -15.51751 -15.48385 -14.60375 -14.44003 -13.88273 -13.59812 -13.54705 -13.26133 -13.02032 -12.86815 -12.34539 -12.29898 -12.05386 -11.64802 -11.12376 -10.94438 -10.89903 -10.80088 -10.59762 -10.17571 -9.99422 -9.85289 -9.69360 -9.16699 -9.04914 -8.86727 -6.92801 -5.76455 -3.05321 1.10603 1.10996 1.79622 2.42581 2.49436 3.26852 3.45271 3.49375 3.50613 4.06035 4.37844 4.58317 4.60337 4.82707 4.94912 5.14476 5.24765 5.31731 5.33333 5.53052 5.58279 5.64752 5.99839 6.08006 6.20489 6.33447 6.45163 6.52436 6.80358 6.84496 6.84799 7.46475 7.70424 8.15882 8.42596 9.53618 10.10946 10.45551 11.46532 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.027417 B = 0.002749 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.008547 B =10184.327520 C =10521.222431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.145 3.855 3 N -0.448 5.448 4 H 0.449 0.551 5 N -0.277 5.277 6 C 0.160 3.840 7 Cl 0.024 6.976 8 C -0.271 4.271 9 C 0.594 3.406 10 O -0.529 6.529 11 N -0.716 5.716 12 C 0.122 3.878 13 C -0.138 4.138 14 C 0.156 3.844 15 N -0.734 5.734 16 C -0.240 4.240 17 H 0.071 0.929 18 C -0.014 4.014 19 N -0.935 5.935 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.402 0.598 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.384 0.616 35 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.235 21.338 -13.264 25.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.013 3.987 3 N -0.157 5.157 4 H 0.295 0.705 5 N -0.102 5.102 6 C -0.032 4.032 7 Cl 0.052 6.948 8 C -0.286 4.286 9 C 0.378 3.622 10 O -0.405 6.405 11 N -0.367 5.367 12 C -0.002 4.002 13 C -0.176 4.176 14 C 0.028 3.972 15 N -0.378 5.378 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.210 4.210 19 N -0.584 5.584 20 Si 0.739 3.261 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 H 0.112 0.888 25 H 0.102 0.898 26 H 0.113 0.887 27 H 0.236 0.764 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.217 0.783 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.899 21.648 -14.038 26.094 hybrid contribution -0.501 -0.779 0.946 1.324 sum 3.398 20.870 -13.092 24.869 Atomic orbital electron populations 1.20657 0.85494 1.05077 1.04749 1.21445 0.94907 0.85933 0.96413 1.45849 1.03032 1.08686 1.58133 0.70516 1.77172 0.96501 1.10730 1.25789 1.22589 0.88915 0.90504 1.01241 1.98439 1.35083 1.64627 1.96682 1.19823 0.91148 0.94610 1.23025 1.17085 0.76961 0.84231 0.83949 1.90807 1.50689 1.67325 1.31653 1.46069 1.68481 1.13907 1.08209 1.21415 1.00429 0.80211 0.98114 1.21947 1.02426 0.98803 0.94419 1.20523 0.97449 0.90460 0.88752 1.42331 1.82124 1.12380 1.00975 1.19204 1.37468 0.88693 0.91791 0.91138 1.24748 1.02537 0.98187 0.95558 1.69646 1.55558 1.34900 0.98273 0.86245 0.78521 0.84439 0.76858 1.21220 1.21685 1.21238 0.88779 0.89820 0.88663 0.76373 0.91143 0.91110 0.91214 0.91284 0.96050 0.96005 0.78301 0.93461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.49 10.25 36.01 0.37 -0.12 16 2 C 0.15 1.16 7.29 -81.61 -0.60 0.57 16 3 N -0.45 -3.21 7.28 33.86 0.25 -2.96 16 4 H 0.45 1.44 8.96 -182.72 -1.64 -0.19 16 5 N -0.28 -2.96 12.64 33.18 0.42 -2.55 16 6 C 0.16 1.88 7.89 -16.91 -0.13 1.75 16 7 Cl 0.02 0.27 29.19 -51.86 -1.51 -1.24 16 8 C -0.27 -3.04 5.88 -105.04 -0.62 -3.66 16 9 C 0.59 7.82 7.16 -12.54 -0.09 7.73 16 10 O -0.53 -8.90 17.11 5.27 0.09 -8.81 16 11 N -0.72 -8.35 5.55 -61.39 -0.34 -8.69 16 12 C 0.12 1.61 5.67 -4.04 -0.02 1.59 16 13 C -0.14 -2.05 5.44 -26.73 -0.15 -2.20 16 14 C 0.16 3.07 6.26 -4.04 -0.03 3.05 16 15 N -0.73 -18.57 5.60 -59.91 -0.34 -18.90 16 16 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 19 N -0.94 -28.26 13.06 55.49 0.72 -27.54 16 20 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.09 0.54 7.95 -51.93 -0.41 0.12 16 27 H 0.40 3.90 8.46 -40.82 -0.35 3.55 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.38 10.08 7.67 -40.82 -0.31 9.77 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 326.97 15.07 4.93 4.93 Total: -1.00 -35.07 326.97 -7.95 -43.02 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -5.64 Total: 4.07 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -1.51 Total: 1.25 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: 0.71 Total: -60.64 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.09 Total: -8.81 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.51 Total: -1.24 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.07 -7.95 -43.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159553097.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.843 kcal (2) G-P(sol) polarization free energy of solvation -35.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds