Wall clock time and date at job start Tue Mar 31 2020 06:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34231 * 126.28169 * 2 1 4 4 H 0.97005 * 125.73677 * 359.95819 * 3 2 1 5 5 N 1.39930 * 108.52698 * 179.97438 * 3 2 1 6 6 C 1.30532 * 108.88996 * 359.97438 * 5 3 2 7 7 Cl 1.73606 * 126.00251 * 180.02562 * 6 5 3 8 8 C 1.38065 * 126.28229 * 179.68688 * 2 1 3 9 9 C 1.47393 * 126.42205 * 0.03137 * 8 2 1 10 10 O 1.21606 * 119.99704 * 90.00521 * 9 8 2 11 11 N 1.34771 * 119.99960 * 270.00137 * 9 8 2 12 12 C 1.46497 * 119.99973 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.47124 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.46849 * 180.02562 * 13 12 11 15 15 N 1.46503 * 109.47254 * 180.02562 * 14 13 12 16 16 C 1.36928 * 120.00301 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00093 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00051 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00168 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00013 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47562 * 59.99402 * 20 18 16 22 22 H 1.48498 * 109.46914 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46780 * 299.99400 * 20 18 16 24 24 H 1.09002 * 109.47152 * 90.02671 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.02772 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.02752 * 1 2 3 27 27 H 0.97003 * 120.00187 * 359.97438 * 11 9 8 28 28 H 1.09004 * 109.47132 * 300.00023 * 12 11 9 29 29 H 1.09004 * 109.47193 * 60.00298 * 12 11 9 30 30 H 1.08991 * 109.47078 * 299.99738 * 13 12 11 31 31 H 1.08995 * 109.47165 * 60.00157 * 13 12 11 32 32 H 1.09004 * 109.47216 * 299.99769 * 14 13 12 33 33 H 1.08995 * 109.47161 * 60.00091 * 14 13 12 34 34 H 0.97004 * 119.99318 * 0.02562 * 15 14 13 35 35 H 0.96995 * 120.00672 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0019 2.0047 -0.0006 5 7 3.6340 0.6554 0.0006 6 6 3.6599 -0.6497 0.0015 7 17 5.0843 -1.6422 0.0031 8 6 2.3240 -1.1129 0.0061 9 6 1.8858 -2.5202 0.0131 10 8 1.7057 -3.1061 -1.0371 11 7 1.6850 -3.1576 1.1835 12 6 1.2489 -4.5561 1.1905 13 6 1.0961 -5.0355 2.6355 14 6 0.6413 -6.4963 2.6427 15 7 0.4943 -6.9552 4.0262 16 6 0.0933 -8.2391 4.2828 17 1 -0.1143 -8.9136 3.4653 18 6 -0.0453 -8.6740 5.5938 19 7 0.2091 -7.8525 6.5901 20 14 -0.5917 -10.4257 5.9438 21 1 0.3835 -11.3762 5.3518 22 1 -0.6622 -10.6381 7.4118 23 1 -1.9317 -10.6549 5.3462 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3633 0.8902 0.5134 26 1 -0.3633 -0.8898 0.5143 27 1 1.8291 -2.6903 2.0212 28 1 0.2912 -4.6407 0.6768 29 1 1.9905 -5.1705 0.6800 30 1 2.0535 -4.9509 3.1494 31 1 0.3543 -4.4211 3.1456 32 1 -0.3161 -6.5814 2.1285 33 1 1.3834 -7.1104 2.1327 34 1 0.6805 -6.3492 4.7605 35 1 0.1119 -8.1562 7.5062 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159553097.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:26 Heat of formation + Delta-G solvation = 4.934932 kcal Electronic energy + Delta-G solvation = -19342.030143 eV Core-core repulsion = 16015.456604 eV Total energy + Delta-G solvation = -3326.573540 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.65418 -40.32918 -37.97750 -37.45972 -35.85681 -33.84328 -33.70082 -32.51775 -31.06024 -28.60367 -26.92713 -24.75041 -23.19194 -23.09684 -22.53828 -20.84517 -19.26211 -18.87327 -17.57395 -17.25996 -16.69309 -16.54584 -16.38099 -16.21200 -15.51206 -15.25792 -15.20025 -14.56691 -14.40089 -14.07934 -13.69986 -13.32896 -13.27598 -13.02555 -12.83555 -12.76839 -12.59626 -12.40556 -12.09135 -12.01917 -11.92215 -11.77824 -11.13028 -10.91270 -10.59018 -10.11572 -9.93309 -8.99366 -7.94489 -5.23395 0.33206 0.42897 0.96568 1.44924 1.49245 1.52221 1.58307 1.82052 2.30554 2.58590 3.39391 3.46246 3.72110 3.79573 3.91357 4.04933 4.14514 4.33198 4.48911 4.62594 4.65289 4.75121 4.78033 4.79100 4.93214 5.07032 5.31018 5.36016 5.42079 5.51001 5.95330 6.21491 6.28247 6.50443 7.17147 7.34753 8.10227 8.33677 9.28903 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.027417 B = 0.002749 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.008547 B =10184.327520 C =10521.222431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.169 3.831 3 N -0.427 5.427 4 H 0.467 0.533 5 N -0.296 5.296 6 C 0.147 3.853 7 Cl 0.014 6.986 8 C -0.303 4.303 9 C 0.601 3.399 10 O -0.571 6.571 11 N -0.704 5.704 12 C 0.133 3.867 13 C -0.119 4.119 14 C 0.152 3.848 15 N -0.747 5.747 16 C -0.250 4.250 17 H 0.075 0.925 18 C -0.075 4.075 19 N -0.969 5.969 20 Si 0.974 3.026 21 H -0.279 1.279 22 H -0.294 1.294 23 H -0.277 1.277 24 H 0.104 0.896 25 H 0.118 0.882 26 H 0.089 0.911 27 H 0.413 0.587 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.025 0.975 33 H 0.021 0.979 34 H 0.375 0.625 35 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.248 22.421 -13.678 26.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.035 3.965 3 N -0.139 5.139 4 H 0.317 0.683 5 N -0.121 5.121 6 C -0.045 4.045 7 Cl 0.042 6.958 8 C -0.318 4.318 9 C 0.386 3.614 10 O -0.450 6.450 11 N -0.355 5.355 12 C 0.009 3.991 13 C -0.157 4.157 14 C 0.025 3.975 15 N -0.390 5.390 16 C -0.382 4.382 17 H 0.093 0.907 18 C -0.267 4.267 19 N -0.620 5.620 20 Si 0.803 3.197 21 H -0.205 1.205 22 H -0.220 1.220 23 H -0.203 1.203 24 H 0.122 0.878 25 H 0.136 0.864 26 H 0.108 0.892 27 H 0.250 0.750 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.043 0.957 33 H 0.039 0.961 34 H 0.207 0.793 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.921 22.777 -14.469 27.142 hybrid contribution -0.223 -1.028 1.018 1.463 sum 2.698 21.749 -13.451 25.715 Atomic orbital electron populations 1.20846 0.82888 1.06505 1.05770 1.21841 0.96117 0.84967 0.93579 1.45864 1.01831 1.09610 1.56556 0.68256 1.77104 0.98420 1.10269 1.26353 1.22657 0.88842 0.90886 1.02094 1.98426 1.35649 1.64975 1.96764 1.19748 0.91614 0.94324 1.26155 1.17279 0.75915 0.84834 0.83341 1.90782 1.52662 1.68465 1.33063 1.45926 1.67766 1.13204 1.08638 1.21173 1.00349 0.80968 0.96644 1.21702 1.02490 0.95879 0.95597 1.20686 0.97625 0.93239 0.85941 1.42543 1.81980 1.11577 1.02923 1.19619 1.36490 0.89972 0.92072 0.90689 1.25572 1.03438 1.02179 0.95505 1.69795 1.57145 1.36686 0.98334 0.85208 0.78397 0.79838 0.76301 1.20474 1.22020 1.20289 0.87783 0.86382 0.89244 0.75025 0.90979 0.91954 0.91118 0.90420 0.95665 0.96129 0.79255 0.93916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.66 10.25 71.24 0.73 0.07 16 2 C 0.17 2.31 7.29 42.15 0.31 2.62 16 3 N -0.43 -5.08 7.28 -46.79 -0.34 -5.43 16 4 H 0.47 1.57 8.96 -213.42 -1.91 -0.34 16 5 N -0.30 -5.96 12.64 -48.95 -0.62 -6.58 16 6 C 0.15 3.36 7.89 85.66 0.68 4.04 16 7 Cl 0.01 0.32 29.19 -2.72 -0.08 0.25 16 8 C -0.30 -6.48 5.88 -20.13 -0.12 -6.60 16 9 C 0.60 15.40 7.16 86.65 0.62 16.02 16 10 O -0.57 -19.16 17.11 -4.05 -0.07 -19.22 16 11 N -0.70 -15.67 5.55 -466.40 -2.59 -18.26 16 12 C 0.13 3.38 5.67 86.38 0.49 3.87 16 13 C -0.12 -3.40 5.44 30.60 0.17 -3.23 16 14 C 0.15 5.87 6.26 86.38 0.54 6.41 16 15 N -0.75 -37.69 5.60 -343.45 -1.92 -39.61 16 16 C -0.25 -14.00 9.99 84.04 0.84 -13.16 16 17 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 18 C -0.07 -4.28 5.50 84.86 0.47 -3.82 16 19 N -0.97 -58.92 13.06 21.65 0.28 -58.64 16 20 Si 0.97 45.96 29.55 68.60 2.03 47.99 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 24 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 26 H 0.09 0.77 7.95 -2.38 -0.02 0.75 16 27 H 0.41 7.41 8.46 -92.71 -0.78 6.62 16 28 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.38 19.83 7.67 -92.71 -0.71 19.12 16 35 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -75.34 326.97 -0.85 -76.19 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -2.26 Total: 17.10 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 4.72 Total: 6.22 kcal Atomic # 7 Polarization: -123.32 SS G_CDS: -5.19 Total: -128.51 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.07 Total: -19.22 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Atomic # 17 Polarization: 0.32 SS G_CDS: -0.08 Total: 0.25 kcal Total: -75.34 -0.85 -76.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159553097.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.122 kcal (2) G-P(sol) polarization free energy of solvation -75.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds