Wall clock time and date at job start Tue Mar 31 2020 06:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47446 * 2 1 4 4 H 1.09005 * 109.46846 * 305.72217 * 3 2 1 5 5 C 1.50696 * 109.47240 * 185.72532 * 3 2 1 6 6 H 1.08002 * 119.99529 * 274.99827 * 5 3 2 7 7 C 1.37874 * 120.00133 * 94.99939 * 5 3 2 8 8 N 1.31517 * 119.99981 * 184.82814 * 7 5 3 9 9 Si 1.86800 * 120.00035 * 4.83068 * 7 5 3 10 10 H 1.48498 * 109.47062 * 84.86038 * 9 7 5 11 11 H 1.48504 * 109.46657 * 204.85948 * 9 7 5 12 12 H 1.48497 * 109.47084 * 324.85824 * 9 7 5 13 13 N 1.46496 * 109.47053 * 65.71793 * 3 2 1 14 14 C 1.39049 * 120.00363 * 275.27884 * 13 3 2 15 15 C 1.39473 * 120.15699 * 359.44881 * 14 13 3 16 16 C 1.38560 * 117.90601 * 179.71818 * 15 14 13 17 17 C 1.38819 * 118.03693 * 0.56632 * 16 15 14 18 18 S 1.76196 * 119.99692 * 179.70636 * 17 16 15 19 19 N 1.65607 * 107.21883 * 269.98271 * 18 17 16 20 20 O 1.42100 * 106.40124 * 23.52006 * 18 17 16 21 21 O 1.42099 * 106.40522 * 156.44112 * 18 17 16 22 22 N 1.31795 * 120.01457 * 359.68836 * 17 16 15 23 23 N 1.28351 * 122.28570 * 0.02562 * 22 17 16 24 24 H 1.08997 * 109.47415 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47250 * 300.00347 * 1 2 3 26 26 H 1.09000 * 109.46909 * 60.00055 * 1 2 3 27 27 H 1.08997 * 109.47250 * 239.99653 * 2 1 3 28 28 H 1.09000 * 109.46909 * 119.99945 * 2 1 3 29 29 H 0.97000 * 120.00068 * 180.02562 * 8 7 5 30 30 H 0.97009 * 119.99731 * 95.00502 * 13 3 2 31 31 H 1.08006 * 121.04560 * 359.97438 * 15 14 13 32 32 H 1.08002 * 120.98727 * 180.27746 * 16 15 14 33 33 H 0.97002 * 119.99801 * 149.99722 * 19 18 17 34 34 H 0.96994 * 119.99694 * 330.00141 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5955 1.9850 -0.8344 5 6 3.5404 1.4448 -0.1417 6 1 4.1654 1.3332 0.7319 7 6 4.1150 1.5894 -1.3866 8 7 5.4197 1.4965 -1.5235 9 14 3.0404 1.9174 -2.8790 10 1 2.7740 3.3743 -2.9865 11 1 3.7382 1.4500 -4.1037 12 1 1.7549 1.1885 -2.7331 13 7 1.6674 2.0922 1.2590 14 6 0.4109 2.6716 1.3971 15 6 -0.4930 2.6461 0.3352 16 6 -1.7340 3.2320 0.5258 17 6 -1.9968 3.8183 1.7565 18 16 -3.5554 4.5850 2.0522 19 7 -3.4137 6.1727 1.6030 20 8 -4.4732 3.9915 1.1441 21 8 -3.7435 4.5817 3.4606 22 7 -1.0808 3.8011 2.7039 23 7 0.0688 3.2553 2.5363 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.8240 1.5986 -2.3992 30 1 2.2958 2.1148 1.9977 31 1 -0.2352 2.1806 -0.6046 32 1 -2.4735 3.2368 -0.2613 33 1 -4.1879 6.6537 1.2711 34 1 -2.5566 6.6215 1.6718 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161055943.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:36 Heat of formation + Delta-G solvation = -15.539989 kcal Electronic energy + Delta-G solvation = -20691.697993 eV Core-core repulsion = 17366.280301 eV Total energy + Delta-G solvation = -3325.417693 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.089 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.87798 -37.35050 -37.16335 -35.85782 -33.43585 -33.30989 -33.09229 -32.07176 -30.52744 -27.56916 -24.92979 -23.82924 -22.97147 -20.56942 -19.62475 -18.70095 -18.25969 -17.52492 -17.37417 -16.62306 -16.25837 -15.54593 -15.17153 -14.99939 -14.64704 -13.88257 -13.63445 -13.42072 -13.06237 -12.51254 -12.41289 -12.30938 -12.21950 -12.08915 -11.96968 -11.51668 -11.22552 -11.11875 -10.81394 -10.70059 -10.56916 -10.31079 -10.15171 -10.08059 -9.65460 -9.52513 -8.98716 -7.77716 -6.51689 -4.58586 0.32120 0.87565 0.99334 2.96233 3.02757 3.03489 3.08807 3.36757 3.44365 3.78826 4.00864 4.20934 4.63363 4.75345 4.87125 5.01453 5.10143 5.50954 5.55438 5.62883 5.73009 5.79593 5.82411 5.98796 6.10738 6.28762 6.42380 6.53263 6.86644 6.87708 7.03664 7.31286 7.85936 8.10041 8.50510 8.79593 9.05521 10.59716 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.029152 B = 0.004426 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.265154 B = 6324.655940 C = 6446.816532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.132 4.132 3 C 0.234 3.766 4 H 0.047 0.953 5 C -0.536 4.536 6 H 0.084 0.916 7 C 0.085 3.915 8 N -0.876 5.876 9 Si 0.870 3.130 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.261 1.261 13 N -0.657 5.657 14 C 0.385 3.615 15 C -0.200 4.200 16 C -0.014 4.014 17 C -0.594 4.594 18 S 2.731 3.269 19 N -1.247 6.247 20 O -0.965 6.965 21 O -0.947 6.947 22 N -0.091 5.091 23 N -0.324 5.324 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.272 0.728 30 H 0.410 0.590 31 H 0.161 0.839 32 H 0.158 0.842 33 H 0.419 0.581 34 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.126 5.562 0.398 15.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.171 4.171 3 C 0.132 3.868 4 H 0.065 0.935 5 C -0.574 4.574 6 H 0.102 0.898 7 C -0.121 4.121 8 N -0.511 5.511 9 Si 0.696 3.304 10 H -0.196 1.196 11 H -0.205 1.205 12 H -0.186 1.186 13 N -0.279 5.279 14 C 0.140 3.860 15 C -0.233 4.233 16 C -0.042 4.042 17 C -0.826 4.826 18 S 2.814 3.186 19 N -0.921 5.921 20 O -0.954 6.954 21 O -0.935 6.935 22 N 0.058 4.942 23 N -0.184 5.184 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.247 0.753 31 H 0.178 0.822 32 H 0.176 0.824 33 H 0.249 0.751 34 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -14.108 5.171 1.886 15.143 hybrid contribution 0.354 0.039 -2.494 2.520 sum -13.754 5.209 -0.609 14.720 Atomic orbital electron populations 1.22305 0.98168 1.01001 1.00697 1.22211 0.93058 0.99199 1.02644 1.19510 0.96972 0.89144 0.81197 0.93525 1.20867 0.87824 1.52784 0.95935 0.89781 1.24942 0.94965 0.93478 0.98714 1.69852 1.09752 1.46608 1.24869 0.86964 0.81178 0.79566 0.82686 1.19595 1.20533 1.18554 1.46113 1.09989 1.53186 1.18622 1.20551 0.87985 0.86718 0.90767 1.22210 0.94542 1.05141 1.01452 1.21706 0.96505 0.90399 0.95576 1.33894 1.23914 1.23559 1.01262 1.00966 0.71706 0.72182 0.73793 1.53119 1.20951 1.31852 1.86222 1.93595 1.59667 1.76359 1.65733 1.93607 1.83593 1.85637 1.30700 1.72795 0.94563 1.03674 1.23136 1.73073 1.10890 1.15041 1.19418 0.93306 0.93190 0.93015 0.90949 0.91899 0.91762 0.75339 0.82196 0.82418 0.75073 0.75411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 8.23 37.16 0.31 -2.23 16 2 C -0.13 -2.37 5.59 -26.73 -0.15 -2.52 16 3 C 0.23 4.65 1.86 -69.09 -0.13 4.52 16 4 H 0.05 0.93 3.64 -51.93 -0.19 0.74 16 5 C -0.54 -12.90 9.05 -34.44 -0.31 -13.21 16 6 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 7 C 0.09 2.15 5.47 -17.82 -0.10 2.05 16 8 N -0.88 -23.82 13.96 55.43 0.77 -23.04 16 9 Si 0.87 18.48 26.99 -169.99 -4.59 13.90 16 10 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 11 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 12 H -0.26 -5.10 6.82 56.52 0.39 -4.71 16 13 N -0.66 -12.07 5.19 -54.93 -0.29 -12.36 16 14 C 0.38 6.81 6.59 -154.77 -1.02 5.79 16 15 C -0.20 -3.13 6.79 -39.00 -0.26 -3.40 16 16 C -0.01 -0.19 9.65 -39.25 -0.38 -0.57 16 17 C -0.59 -8.63 6.94 -17.35 -0.12 -8.75 16 18 S 2.73 32.79 6.35 -107.50 -0.68 32.11 16 19 N -1.25 -9.41 9.52 60.35 0.57 -8.84 16 20 O -0.96 -13.10 17.33 -57.17 -0.99 -14.09 16 21 O -0.95 -14.74 17.87 -57.17 -1.02 -15.76 16 22 N -0.09 -1.58 11.27 31.22 0.35 -1.22 16 23 N -0.32 -5.95 11.54 31.23 0.36 -5.59 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.79 5.35 -51.93 -0.28 0.52 16 26 H 0.05 0.74 6.39 -51.93 -0.33 0.41 16 27 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.41 7.36 8.72 -40.82 -0.36 7.01 16 31 H 0.16 2.38 4.13 -52.48 -0.22 2.17 16 32 H 0.16 1.67 7.69 -52.49 -0.40 1.27 16 33 H 0.42 2.14 8.96 -34.48 -0.31 1.83 16 34 H 0.42 2.59 8.96 -34.47 -0.31 2.28 16 LS Contribution 295.86 15.07 4.46 4.46 Total: -1.00 -31.49 295.86 -6.45 -37.94 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -3.24 Total: 10.83 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -2.17 Total: -18.33 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: 1.78 Total: -51.05 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -2.01 Total: -29.85 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -4.59 Total: 13.90 kcal Atomic # 16 Polarization: 32.79 SS G_CDS: -0.68 Total: 32.11 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.49 -6.45 -37.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161055943.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.403 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds