Wall clock time and date at job start Tue Mar 31 2020 06:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47446 * 2 1 4 4 H 1.09005 * 109.46846 * 305.72217 * 3 2 1 5 5 C 1.50696 * 109.47240 * 185.72532 * 3 2 1 6 6 H 1.08002 * 119.99529 * 274.99827 * 5 3 2 7 7 C 1.37874 * 120.00133 * 94.99939 * 5 3 2 8 8 N 1.31517 * 119.99981 * 184.82814 * 7 5 3 9 9 Si 1.86800 * 120.00035 * 4.83068 * 7 5 3 10 10 H 1.48498 * 109.47062 * 84.86038 * 9 7 5 11 11 H 1.48504 * 109.46657 * 204.85948 * 9 7 5 12 12 H 1.48497 * 109.47084 * 324.85824 * 9 7 5 13 13 N 1.46496 * 109.47053 * 65.71793 * 3 2 1 14 14 C 1.39049 * 120.00363 * 275.27884 * 13 3 2 15 15 C 1.39473 * 120.15699 * 359.44881 * 14 13 3 16 16 C 1.38560 * 117.90601 * 179.71818 * 15 14 13 17 17 C 1.38819 * 118.03693 * 0.56632 * 16 15 14 18 18 S 1.76196 * 119.99692 * 179.70636 * 17 16 15 19 19 N 1.65607 * 107.21883 * 269.98271 * 18 17 16 20 20 O 1.42100 * 106.40124 * 23.52006 * 18 17 16 21 21 O 1.42099 * 106.40522 * 156.44112 * 18 17 16 22 22 N 1.31795 * 120.01457 * 359.68836 * 17 16 15 23 23 N 1.28351 * 122.28570 * 0.02562 * 22 17 16 24 24 H 1.08997 * 109.47415 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47250 * 300.00347 * 1 2 3 26 26 H 1.09000 * 109.46909 * 60.00055 * 1 2 3 27 27 H 1.08997 * 109.47250 * 239.99653 * 2 1 3 28 28 H 1.09000 * 109.46909 * 119.99945 * 2 1 3 29 29 H 0.97000 * 120.00068 * 180.02562 * 8 7 5 30 30 H 0.97009 * 119.99731 * 95.00502 * 13 3 2 31 31 H 1.08006 * 121.04560 * 359.97438 * 15 14 13 32 32 H 1.08002 * 120.98727 * 180.27746 * 16 15 14 33 33 H 0.97002 * 119.99801 * 149.99722 * 19 18 17 34 34 H 0.96994 * 119.99694 * 330.00141 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5955 1.9850 -0.8344 5 6 3.5404 1.4448 -0.1417 6 1 4.1654 1.3332 0.7319 7 6 4.1150 1.5894 -1.3866 8 7 5.4197 1.4965 -1.5235 9 14 3.0404 1.9174 -2.8790 10 1 2.7740 3.3743 -2.9865 11 1 3.7382 1.4500 -4.1037 12 1 1.7549 1.1885 -2.7331 13 7 1.6674 2.0922 1.2590 14 6 0.4109 2.6716 1.3971 15 6 -0.4930 2.6461 0.3352 16 6 -1.7340 3.2320 0.5258 17 6 -1.9968 3.8183 1.7565 18 16 -3.5554 4.5850 2.0522 19 7 -3.4137 6.1727 1.6030 20 8 -4.4732 3.9915 1.1441 21 8 -3.7435 4.5817 3.4606 22 7 -1.0808 3.8011 2.7039 23 7 0.0688 3.2553 2.5363 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.8240 1.5986 -2.3992 30 1 2.2958 2.1148 1.9977 31 1 -0.2352 2.1806 -0.6046 32 1 -2.4735 3.2368 -0.2613 33 1 -4.1879 6.6537 1.2711 34 1 -2.5566 6.6215 1.6718 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161055943.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:35 Heat of formation + Delta-G solvation = -43.282702 kcal Electronic energy + Delta-G solvation = -20692.901008 eV Core-core repulsion = 17366.280301 eV Total energy + Delta-G solvation = -3326.620707 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.089 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.15634 -38.77384 -38.24689 -36.94427 -35.01264 -34.42978 -34.04602 -33.57696 -31.86088 -29.16808 -26.19167 -25.25764 -24.38583 -21.94570 -20.70288 -20.07274 -19.37075 -18.81061 -18.39249 -18.07921 -17.25523 -17.01858 -16.42163 -16.17096 -16.02114 -15.24936 -14.94068 -14.81025 -14.51662 -13.95014 -13.89735 -13.55681 -13.26846 -13.18441 -13.07919 -12.97683 -12.82756 -12.48691 -12.16032 -11.97491 -11.84835 -11.68103 -11.35744 -11.33310 -11.28347 -10.85847 -10.81578 -9.16146 -8.42396 -6.53787 -0.68399 -0.33778 -0.21451 1.32010 1.33283 1.43309 1.94678 2.09696 2.24685 2.31340 2.73382 2.96425 3.07022 3.48049 3.57365 3.85767 4.00904 4.14657 4.26947 4.31113 4.44014 4.54997 4.67778 4.89830 5.00062 5.09700 5.14250 5.27538 5.33189 5.47145 5.77823 6.19836 6.36833 6.45436 6.60471 7.14097 7.51946 8.72902 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.029152 B = 0.004426 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.265154 B = 6324.655940 C = 6446.816532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.131 4.131 3 C 0.245 3.755 4 H 0.055 0.945 5 C -0.538 4.538 6 H 0.043 0.957 7 C 0.028 3.972 8 N -0.932 5.932 9 Si 0.928 3.072 10 H -0.266 1.266 11 H -0.284 1.284 12 H -0.226 1.226 13 N -0.670 5.670 14 C 0.373 3.627 15 C -0.203 4.203 16 C -0.004 4.004 17 C -0.585 4.585 18 S 2.760 3.240 19 N -1.226 6.226 20 O -0.974 6.974 21 O -0.981 6.981 22 N -0.118 5.118 23 N -0.350 5.350 24 H 0.066 0.934 25 H 0.043 0.957 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.272 0.728 30 H 0.406 0.594 31 H 0.174 0.826 32 H 0.198 0.802 33 H 0.434 0.566 34 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.577 6.301 -1.240 18.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.170 4.170 3 C 0.141 3.859 4 H 0.073 0.927 5 C -0.576 4.576 6 H 0.061 0.939 7 C -0.173 4.173 8 N -0.569 5.569 9 Si 0.751 3.249 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.148 1.148 13 N -0.294 5.294 14 C 0.130 3.870 15 C -0.237 4.237 16 C -0.032 4.032 17 C -0.817 4.817 18 S 2.840 3.160 19 N -0.907 5.907 20 O -0.962 6.962 21 O -0.970 6.970 22 N 0.034 4.966 23 N -0.209 5.209 24 H 0.085 0.915 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.242 0.758 31 H 0.191 0.809 32 H 0.216 0.784 33 H 0.268 0.732 34 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -17.588 5.922 0.289 18.560 hybrid contribution 1.320 -0.104 -1.871 2.292 sum -16.267 5.818 -1.582 17.349 Atomic orbital electron populations 1.22236 0.95557 1.02458 1.01232 1.22111 0.95342 0.97490 1.02044 1.19290 0.93990 0.90518 0.82061 0.92685 1.21088 0.90197 1.51742 0.94586 0.93903 1.25823 0.96084 0.93302 1.02056 1.70009 1.12050 1.49244 1.25618 0.86021 0.80752 0.79911 0.78262 1.19079 1.20958 1.14822 1.45724 1.10832 1.54751 1.18049 1.20617 0.87890 0.87026 0.91513 1.22426 0.94774 1.05253 1.01214 1.22193 0.96455 0.88524 0.95999 1.34462 1.23870 1.22318 1.01028 1.00092 0.70330 0.72723 0.72815 1.52663 1.22255 1.30044 1.85779 1.93580 1.59628 1.77340 1.65676 1.93578 1.83734 1.86498 1.33181 1.72756 0.94828 1.04604 1.24368 1.73002 1.11813 1.15866 1.20258 0.91494 0.93811 0.91197 0.91344 0.92873 0.91876 0.75825 0.80922 0.78448 0.73168 0.74193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.36 8.23 71.98 0.59 -3.77 16 2 C -0.13 -4.52 5.59 30.59 0.17 -4.35 16 3 C 0.24 9.54 1.86 44.25 0.08 9.62 16 4 H 0.06 2.05 3.64 -2.38 -0.01 2.04 16 5 C -0.54 -26.68 9.05 25.60 0.23 -26.45 16 6 H 0.04 2.41 8.06 -2.91 -0.02 2.38 16 7 C 0.03 1.45 5.47 84.65 0.46 1.91 16 8 N -0.93 -52.66 13.96 21.45 0.30 -52.36 16 9 Si 0.93 37.08 26.99 68.60 1.85 38.93 16 10 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 11 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 12 H -0.23 -7.65 6.82 99.48 0.68 -6.98 16 13 N -0.67 -24.71 5.19 -327.70 -1.70 -26.41 16 14 C 0.37 12.79 6.59 133.10 0.88 13.67 16 15 C -0.20 -5.73 6.79 22.64 0.15 -5.58 16 16 C 0.00 -0.10 9.65 22.49 0.22 0.12 16 17 C -0.58 -15.39 6.94 84.84 0.59 -14.81 16 18 S 2.76 58.04 6.35 -56.49 -0.36 57.68 16 19 N -1.23 -14.18 9.52 37.02 0.35 -13.83 16 20 O -0.97 -22.76 17.33 -128.00 -2.22 -24.98 16 21 O -0.98 -28.70 17.87 -128.00 -2.29 -30.99 16 22 N -0.12 -3.91 11.27 -55.15 -0.62 -4.53 16 23 N -0.35 -12.72 11.54 -55.10 -0.64 -13.36 16 24 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.04 1.27 5.35 -2.39 -0.01 1.26 16 26 H 0.07 1.68 6.39 -2.39 -0.02 1.66 16 27 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 30 H 0.41 15.28 8.72 -92.70 -0.81 14.47 16 31 H 0.17 4.40 4.13 -2.91 -0.01 4.38 16 32 H 0.20 3.04 7.69 -2.91 -0.02 3.02 16 33 H 0.43 2.75 8.96 -96.74 -0.87 1.88 16 34 H 0.43 3.83 8.96 -96.75 -0.87 2.97 16 Total: -1.00 -70.01 295.86 -3.31 -73.32 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: -1.37 Total: 26.16 kcal Atomic # 6 Polarization: -33.01 SS G_CDS: 3.38 Total: -29.63 kcal Atomic # 7 Polarization: -108.18 SS G_CDS: -2.31 Total: -110.48 kcal Atomic # 8 Polarization: -51.46 SS G_CDS: -4.51 Total: -55.97 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 1.85 Total: 38.93 kcal Atomic # 16 Polarization: 58.04 SS G_CDS: -0.36 Total: 57.68 kcal Total: -70.01 -3.31 -73.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161055943.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.039 kcal (2) G-P(sol) polarization free energy of solvation -70.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds