Wall clock time and date at job start Tue Mar 31 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 F 1.39904 * 109.47028 * 2 1 4 4 F 1.39909 * 109.47188 * 240.00497 * 2 1 3 5 5 C 1.52992 * 109.47323 * 120.00220 * 2 1 3 6 6 N 1.46508 * 109.47197 * 180.02562 * 5 2 1 7 7 C 1.37663 * 119.99864 * 180.02562 * 6 5 2 8 8 C 1.40179 * 119.80957 * 359.97438 * 7 6 5 9 9 C 1.35810 * 120.18737 * 180.02562 * 8 7 6 10 10 C 1.41751 * 119.80323 * 359.97438 * 9 8 7 11 11 C 1.39514 * 120.18222 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99706 * 143.27721 * 11 10 9 13 13 C 1.46590 * 120.00253 * 323.27472 * 11 10 9 14 14 N 1.29490 * 119.99617 * 343.30108 * 13 11 10 15 15 Si 1.86799 * 120.00239 * 163.29604 * 13 11 10 16 16 H 1.48500 * 109.47211 * 180.02562 * 15 13 11 17 17 H 1.48498 * 109.47273 * 300.00223 * 15 13 11 18 18 H 1.48505 * 109.46735 * 60.00219 * 15 13 11 19 19 C 1.41717 * 119.63009 * 0.24575 * 10 9 8 20 20 N 1.48011 * 120.09470 * 179.75516 * 19 10 9 21 21 O 1.31700 * 119.99995 * 173.67510 * 20 19 10 22 22 O 1.31693 * 120.00246 * 353.66478 * 20 19 10 23 23 C 1.35838 * 119.80464 * 359.50988 * 19 10 9 24 24 H 1.08996 * 109.47158 * 299.99536 * 1 2 3 25 25 H 1.08999 * 109.47163 * 60.00063 * 1 2 3 26 26 H 1.09000 * 109.47059 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47439 * 60.00452 * 5 2 1 28 28 H 1.08998 * 109.47878 * 299.99910 * 5 2 1 29 29 H 0.96995 * 119.99629 * 359.97438 * 6 5 2 30 30 H 1.07998 * 119.91108 * 359.97438 * 8 7 6 31 31 H 1.07999 * 120.09905 * 179.97438 * 9 8 7 32 32 H 0.97005 * 120.00627 * 354.54495 * 14 13 11 33 33 H 1.07995 * 119.90046 * 180.20791 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0400 -0.7212 1.2491 6 7 3.5051 -0.7207 1.2494 7 6 4.1934 -1.3172 2.2816 8 6 3.4884 -1.9235 3.3307 9 6 4.1597 -2.5137 4.3532 10 6 5.5772 -2.5159 4.3571 11 6 6.2748 -3.1195 5.4037 12 1 7.1941 -3.6503 5.2047 13 6 5.7601 -3.0332 6.7736 14 7 4.8617 -2.1501 7.0732 15 14 6.4001 -4.1973 8.0869 16 1 5.7247 -3.9072 9.3772 17 1 6.1189 -5.5991 7.6856 18 1 7.8653 -4.0112 8.2418 19 6 6.2818 -1.8966 3.2948 20 7 7.7619 -1.8881 3.2913 21 8 8.4152 -1.4241 2.2461 22 8 8.4255 -2.3443 4.3333 23 6 5.5947 -1.3151 2.2774 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6768 -1.7490 1.2491 28 1 1.6768 -0.2076 2.1392 29 1 3.9900 -0.3007 0.5219 30 1 2.4085 -1.9205 3.3263 31 1 3.6152 -2.9800 5.1609 32 1 4.5868 -1.4946 6.4131 33 1 6.1301 -0.8456 1.4655 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162233255.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:56 Heat of formation + Delta-G solvation = -75.057124 kcal Electronic energy + Delta-G solvation = -22239.467487 eV Core-core repulsion = 18325.335800 eV Total energy + Delta-G solvation = -3914.131687 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.14551 -47.13550 -39.02929 -36.89706 -35.78740 -34.07369 -32.48131 -32.20031 -30.52623 -29.45040 -26.93831 -25.08694 -24.15857 -22.24533 -21.48731 -20.36931 -18.80733 -17.83167 -17.50772 -17.06576 -16.23702 -16.20071 -15.38487 -14.87070 -14.63085 -14.48681 -14.33852 -14.13427 -13.78832 -13.67974 -13.46277 -13.20240 -12.95784 -12.90328 -12.55777 -12.37179 -11.91331 -11.70205 -11.44830 -11.13897 -10.73500 -10.69521 -10.35560 -9.90376 -9.50080 -9.39897 -9.08780 -9.01274 -8.54994 -8.00281 -7.16305 -4.89845 0.90745 2.31927 2.64231 2.88883 2.99113 3.08634 3.12513 3.44179 3.55731 3.65852 3.85713 3.94095 4.17202 4.42473 4.71165 5.01403 5.05638 5.29918 5.44605 5.51398 5.53557 5.55792 6.04285 6.18092 6.45647 6.52180 6.75014 6.88448 7.04044 7.19476 7.22871 7.65192 7.76747 7.95634 8.01793 8.20192 8.80616 9.18793 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.021035 B = 0.004486 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.768919 B = 6240.825067 C = 7292.807159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.279 3.721 3 F -0.197 7.197 4 F -0.197 7.197 5 C 0.097 3.903 6 N -0.747 5.747 7 C 0.108 3.892 8 C -0.119 4.119 9 C -0.132 4.132 10 C 0.048 3.952 11 C -0.366 4.366 12 H 0.124 0.876 13 C 0.022 3.978 14 N -0.722 5.722 15 Si 1.081 2.919 16 H -0.267 1.267 17 H -0.265 1.265 18 H -0.259 1.259 19 C -0.066 4.066 20 N 0.038 4.962 21 O -0.363 6.363 22 O -0.285 6.285 23 C -0.109 4.109 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.398 0.602 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.309 0.691 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.274 0.590 -4.027 14.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.242 3.758 3 F -0.178 7.178 4 F -0.178 7.178 5 C -0.029 4.029 6 N -0.384 5.384 7 C 0.007 3.993 8 C -0.140 4.140 9 C -0.151 4.151 10 C 0.042 3.958 11 C -0.395 4.395 12 H 0.141 0.859 13 C -0.209 4.209 14 N -0.343 5.343 15 Si 0.900 3.100 16 H -0.191 1.191 17 H -0.189 1.189 18 H -0.183 1.183 19 C -0.170 4.170 20 N 0.452 4.548 21 O -0.503 6.503 22 O -0.443 6.443 23 C -0.135 4.135 24 H 0.111 0.889 25 H 0.103 0.897 26 H 0.111 0.889 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.232 0.768 30 H 0.129 0.871 31 H 0.141 0.859 32 H 0.125 0.875 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.821 0.263 -2.570 15.044 hybrid contribution 0.694 0.889 -2.249 2.516 sum -14.127 1.151 -4.819 14.970 Atomic orbital electron populations 1.22733 0.90904 1.05758 1.05670 1.21400 0.94176 0.75961 0.84259 1.93041 1.90556 1.37375 1.96857 1.93041 1.90558 1.80871 1.53378 1.22159 0.84117 1.01111 0.95559 1.43295 1.02696 1.66270 1.26110 1.16916 0.89477 1.02031 0.90870 1.20371 0.98337 1.00584 0.94723 1.20960 0.92790 1.02409 0.98991 1.17233 0.91704 0.93573 0.93286 1.23132 1.07450 1.16890 0.92015 0.85876 1.29375 0.91835 0.98987 1.00694 1.69996 1.15493 1.08346 1.40493 0.83415 0.78152 0.74683 0.73766 1.19076 1.18934 1.18336 1.19298 0.76223 1.16686 1.04800 1.49581 1.03842 1.00559 1.00808 1.96063 1.70993 1.59592 1.23641 1.96040 1.70283 1.55537 1.22436 1.19404 0.91515 1.03281 0.99264 0.88921 0.89714 0.88940 0.89971 0.89948 0.76795 0.87094 0.85942 0.87533 0.86244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.27 9.38 37.16 0.35 -0.92 16 2 C 0.28 2.92 2.06 -26.74 -0.06 2.87 16 3 F -0.20 -2.48 16.92 2.25 0.04 -2.44 16 4 F -0.20 -2.46 16.92 2.25 0.04 -2.43 16 5 C 0.10 1.11 4.38 -4.04 -0.02 1.10 16 6 N -0.75 -11.60 5.51 -58.49 -0.32 -11.92 16 7 C 0.11 2.06 6.67 -83.81 -0.56 1.50 16 8 C -0.12 -2.15 9.21 -39.72 -0.37 -2.52 16 9 C -0.13 -2.69 7.85 -39.11 -0.31 -3.00 16 10 C 0.05 1.14 5.18 -106.75 -0.55 0.59 16 11 C -0.37 -8.81 7.71 -35.74 -0.28 -9.09 16 12 H 0.12 3.14 6.04 -52.49 -0.32 2.82 16 13 C 0.02 0.47 5.25 -15.17 -0.08 0.39 16 14 N -0.72 -15.71 12.64 55.99 0.71 -15.00 16 15 Si 1.08 18.26 30.06 -169.99 -5.11 13.15 16 16 H -0.27 -4.35 7.11 56.52 0.40 -3.95 16 17 H -0.26 -4.19 7.11 56.52 0.40 -3.79 16 18 H -0.26 -4.41 7.11 56.52 0.40 -4.01 16 19 C -0.07 -1.71 6.89 -79.48 -0.55 -2.26 16 20 N 0.04 1.08 4.98 34.19 0.17 1.25 16 21 O -0.36 -10.76 19.14 -31.57 -0.60 -11.36 16 22 O -0.29 -8.40 16.31 -31.56 -0.51 -8.91 16 23 C -0.11 -2.48 9.35 -39.73 -0.37 -2.86 16 24 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.85 7.91 -51.93 -0.41 0.44 16 28 H 0.08 0.86 7.91 -51.93 -0.41 0.45 16 29 H 0.40 6.14 8.34 -40.82 -0.34 5.80 16 30 H 0.11 1.60 6.66 -52.49 -0.35 1.25 16 31 H 0.12 2.37 7.08 -52.49 -0.37 2.00 16 32 H 0.31 6.86 6.60 -40.82 -0.27 6.59 16 33 H 0.12 2.70 7.55 -52.49 -0.40 2.31 16 LS Contribution 300.25 15.07 4.52 4.52 Total: -1.00 -30.43 300.25 -6.78 -37.22 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -2.93 Total: 10.11 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -2.78 Total: -14.20 kcal Atomic # 7 Polarization: -26.22 SS G_CDS: 0.56 Total: -25.66 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -1.12 Total: -20.28 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 0.08 Total: -4.86 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.11 Total: 13.15 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.43 -6.78 -37.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162233255.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.841 kcal (2) G-P(sol) polarization free energy of solvation -30.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds