Wall clock time and date at job start Tue Mar 31 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 F 1.39904 * 109.47028 * 2 1 4 4 F 1.39909 * 109.47188 * 240.00497 * 2 1 3 5 5 C 1.52992 * 109.47323 * 120.00220 * 2 1 3 6 6 N 1.46508 * 109.47197 * 180.02562 * 5 2 1 7 7 C 1.37663 * 119.99864 * 180.02562 * 6 5 2 8 8 C 1.40179 * 119.80957 * 359.97438 * 7 6 5 9 9 C 1.35810 * 120.18737 * 180.02562 * 8 7 6 10 10 C 1.41751 * 119.80323 * 359.97438 * 9 8 7 11 11 C 1.39514 * 120.18222 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99706 * 143.27721 * 11 10 9 13 13 C 1.46590 * 120.00253 * 323.27472 * 11 10 9 14 14 N 1.29490 * 119.99617 * 343.30108 * 13 11 10 15 15 Si 1.86799 * 120.00239 * 163.29604 * 13 11 10 16 16 H 1.48500 * 109.47211 * 180.02562 * 15 13 11 17 17 H 1.48498 * 109.47273 * 300.00223 * 15 13 11 18 18 H 1.48505 * 109.46735 * 60.00219 * 15 13 11 19 19 C 1.41717 * 119.63009 * 0.24575 * 10 9 8 20 20 N 1.48011 * 120.09470 * 179.75516 * 19 10 9 21 21 O 1.31700 * 119.99995 * 173.67510 * 20 19 10 22 22 O 1.31693 * 120.00246 * 353.66478 * 20 19 10 23 23 C 1.35838 * 119.80464 * 359.50988 * 19 10 9 24 24 H 1.08996 * 109.47158 * 299.99536 * 1 2 3 25 25 H 1.08999 * 109.47163 * 60.00063 * 1 2 3 26 26 H 1.09000 * 109.47059 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47439 * 60.00452 * 5 2 1 28 28 H 1.08998 * 109.47878 * 299.99910 * 5 2 1 29 29 H 0.96995 * 119.99629 * 359.97438 * 6 5 2 30 30 H 1.07998 * 119.91108 * 359.97438 * 8 7 6 31 31 H 1.07999 * 120.09905 * 179.97438 * 9 8 7 32 32 H 0.97005 * 120.00627 * 354.54495 * 14 13 11 33 33 H 1.07995 * 119.90046 * 180.20791 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0400 -0.7212 1.2491 6 7 3.5051 -0.7207 1.2494 7 6 4.1934 -1.3172 2.2816 8 6 3.4884 -1.9235 3.3307 9 6 4.1597 -2.5137 4.3532 10 6 5.5772 -2.5159 4.3571 11 6 6.2748 -3.1195 5.4037 12 1 7.1941 -3.6503 5.2047 13 6 5.7601 -3.0332 6.7736 14 7 4.8617 -2.1501 7.0732 15 14 6.4001 -4.1973 8.0869 16 1 5.7247 -3.9072 9.3772 17 1 6.1189 -5.5991 7.6856 18 1 7.8653 -4.0112 8.2418 19 6 6.2818 -1.8966 3.2948 20 7 7.7619 -1.8881 3.2913 21 8 8.4152 -1.4241 2.2461 22 8 8.4255 -2.3443 4.3333 23 6 5.5947 -1.3151 2.2774 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6768 -1.7490 1.2491 28 1 1.6768 -0.2076 2.1392 29 1 3.9900 -0.3007 0.5219 30 1 2.4085 -1.9205 3.3263 31 1 3.6152 -2.9800 5.1609 32 1 4.5868 -1.4946 6.4131 33 1 6.1301 -0.8456 1.4655 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162233255.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:56 Heat of formation + Delta-G solvation = -94.926258 kcal Electronic energy + Delta-G solvation = -22240.329078 eV Core-core repulsion = 18325.335800 eV Total energy + Delta-G solvation = -3914.993277 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.02011 -48.03322 -40.74926 -38.49760 -37.47809 -35.66649 -34.24662 -33.23392 -32.21767 -31.01683 -28.37575 -26.59049 -25.88241 -23.55228 -22.84953 -21.96273 -20.62851 -18.87700 -18.68404 -18.46567 -17.77588 -17.26347 -17.09048 -16.43864 -16.18042 -15.95630 -15.64742 -15.38716 -15.35057 -14.77908 -14.63178 -14.39385 -14.36155 -13.81536 -13.49000 -13.39675 -13.21811 -13.10207 -12.95416 -12.39778 -12.30236 -11.92858 -11.84713 -11.50639 -11.26435 -11.11882 -11.07899 -10.86967 -10.31324 -9.91158 -8.79014 -6.83238 -1.08077 0.60203 0.86336 1.44228 1.47746 1.54449 1.84104 2.09807 2.27467 2.31801 2.68565 2.89687 3.13200 3.43001 3.59315 3.84244 4.07748 4.23514 4.38775 4.39192 4.47458 4.62840 4.64551 4.82417 4.82754 4.96681 5.05491 5.10424 5.18664 5.33083 5.54276 5.78674 5.91826 6.18249 6.38209 6.57694 7.01688 7.24586 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.021035 B = 0.004486 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.768919 B = 6240.825067 C = 7292.807159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.271 3.729 3 F -0.213 7.213 4 F -0.213 7.213 5 C 0.081 3.919 6 N -0.738 5.738 7 C 0.187 3.813 8 C -0.116 4.116 9 C -0.100 4.100 10 C -0.009 4.009 11 C -0.296 4.296 12 H 0.105 0.895 13 C -0.005 4.005 14 N -0.687 5.687 15 Si 1.122 2.878 16 H -0.243 1.243 17 H -0.240 1.240 18 H -0.271 1.271 19 C -0.034 4.034 20 N 0.019 4.981 21 O -0.492 6.492 22 O -0.409 6.409 23 C -0.198 4.198 24 H 0.112 0.888 25 H 0.087 0.913 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.398 0.602 30 H 0.174 0.826 31 H 0.150 0.850 32 H 0.309 0.691 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.465 -0.559 -1.474 21.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.235 3.765 3 F -0.195 7.195 4 F -0.194 7.194 5 C -0.043 4.043 6 N -0.370 5.370 7 C 0.080 3.920 8 C -0.136 4.136 9 C -0.120 4.120 10 C -0.015 4.015 11 C -0.328 4.328 12 H 0.122 0.878 13 C -0.234 4.234 14 N -0.307 5.307 15 Si 0.934 3.066 16 H -0.166 1.166 17 H -0.163 1.163 18 H -0.196 1.196 19 C -0.149 4.149 20 N 0.384 4.616 21 O -0.599 6.599 22 O -0.532 6.532 23 C -0.225 4.225 24 H 0.130 0.870 25 H 0.106 0.894 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.232 0.768 30 H 0.191 0.809 31 H 0.168 0.832 32 H 0.125 0.875 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -21.707 -0.826 -0.122 21.723 hybrid contribution 1.894 1.177 -2.717 3.515 sum -19.813 0.350 -2.840 20.018 Atomic orbital electron populations 1.22777 0.87193 1.07486 1.06873 1.21860 0.96587 0.74877 0.83204 1.93021 1.91014 1.38585 1.96855 1.93022 1.91010 1.81112 1.54297 1.22713 0.80562 1.03585 0.97421 1.43756 1.05238 1.63521 1.24515 1.17226 0.88205 0.96277 0.90334 1.20911 1.01181 0.98726 0.92783 1.21254 0.90402 1.00511 0.99826 1.17757 0.94082 0.95812 0.93833 1.23890 1.05119 1.09814 0.93954 0.87760 1.30788 0.91609 1.00516 1.00529 1.70068 1.13401 1.07177 1.40083 0.82981 0.77152 0.74112 0.72368 1.16623 1.16314 1.19590 1.19889 0.75577 1.14703 1.04713 1.49405 1.04187 1.06900 1.01096 1.95923 1.72024 1.66468 1.25474 1.95871 1.71347 1.61957 1.23987 1.19303 0.93226 1.09348 1.00615 0.86979 0.89407 0.86928 0.86929 0.87032 0.76773 0.80882 0.83235 0.87531 0.88237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.43 9.38 71.98 0.68 -0.76 16 2 C 0.27 4.50 2.06 30.59 0.06 4.56 16 3 F -0.21 -4.73 16.92 44.97 0.76 -3.97 16 4 F -0.21 -4.69 16.92 44.97 0.76 -3.93 16 5 C 0.08 1.36 4.38 86.37 0.38 1.73 16 6 N -0.74 -20.15 5.51 -338.95 -1.87 -22.02 16 7 C 0.19 6.54 6.67 39.16 0.26 6.80 16 8 C -0.12 -3.43 9.21 22.18 0.20 -3.22 16 9 C -0.10 -3.56 7.85 22.57 0.18 -3.38 16 10 C -0.01 -0.44 5.18 -21.24 -0.11 -0.55 16 11 C -0.30 -14.08 7.71 24.76 0.19 -13.88 16 12 H 0.10 5.54 6.04 -2.91 -0.02 5.53 16 13 C 0.00 -0.19 5.25 87.22 0.46 0.27 16 14 N -0.69 -26.37 12.64 23.22 0.29 -26.07 16 15 Si 1.12 32.86 30.06 68.60 2.06 34.93 16 16 H -0.24 -6.39 7.11 99.48 0.71 -5.68 16 17 H -0.24 -6.22 7.11 99.48 0.71 -5.52 16 18 H -0.27 -8.60 7.11 99.48 0.71 -7.90 16 19 C -0.03 -1.88 6.89 36.68 0.25 -1.63 16 20 N 0.02 1.26 4.98 -45.75 -0.23 1.03 16 21 O -0.49 -34.50 19.14 3.51 0.07 -34.44 16 22 O -0.41 -27.58 16.31 3.53 0.06 -27.52 16 23 C -0.20 -9.42 9.35 22.17 0.21 -9.21 16 24 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.11 1.39 7.91 -2.39 -0.02 1.37 16 28 H 0.11 1.40 7.91 -2.39 -0.02 1.38 16 29 H 0.40 11.63 8.34 -92.71 -0.77 10.85 16 30 H 0.17 3.20 6.66 -2.91 -0.02 3.18 16 31 H 0.15 4.62 7.08 -2.91 -0.02 4.60 16 32 H 0.31 12.10 6.60 -92.70 -0.61 11.49 16 33 H 0.10 5.06 7.55 -2.91 -0.02 5.04 16 Total: -1.00 -80.60 300.25 5.22 -75.38 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 0.56 Total: 25.89 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 2.76 Total: -19.27 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: -1.80 Total: -47.06 kcal Atomic # 8 Polarization: -62.09 SS G_CDS: 0.12 Total: -61.96 kcal Atomic # 9 Polarization: -9.42 SS G_CDS: 1.52 Total: -7.90 kcal Atomic # 14 Polarization: 32.86 SS G_CDS: 2.06 Total: 34.93 kcal Total: -80.60 5.22 -75.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162233255.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.550 kcal (2) G-P(sol) polarization free energy of solvation -80.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds