Wall clock time and date at job start Tue Mar 31 2020 06:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 F 1.39893 * 109.47652 * 2 1 4 4 F 1.39903 * 109.46932 * 239.99423 * 2 1 3 5 5 C 1.53007 * 109.46767 * 120.00270 * 2 1 3 6 6 N 1.46495 * 109.46991 * 180.02562 * 5 2 1 7 7 C 1.39669 * 120.00212 * 179.97438 * 6 5 2 8 8 C 1.38177 * 119.98776 * 6.07847 * 7 6 5 9 9 C 1.41129 * 119.50255 * 180.02562 * 8 7 6 10 10 C 1.40361 * 120.25028 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99984 * 23.97286 * 10 9 8 12 12 C 1.46520 * 120.00001 * 203.97008 * 10 9 8 13 13 N 1.29513 * 120.00058 * 15.30522 * 12 10 9 14 14 Si 1.86801 * 120.00168 * 195.30733 * 12 10 9 15 15 H 1.48494 * 109.47043 * 59.99685 * 14 12 10 16 16 H 1.48498 * 109.47088 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47028 * 299.99959 * 14 12 10 18 18 C 1.41337 * 119.49582 * 359.73090 * 9 8 7 19 19 C 1.36482 * 119.96450 * 0.51888 * 18 9 8 20 20 C 1.38664 * 120.49698 * 359.47757 * 19 18 9 21 21 N 1.48025 * 119.74111 * 180.25291 * 20 19 18 22 22 O 1.31700 * 119.99799 * 353.68608 * 21 20 19 23 23 O 1.31689 * 120.00268 * 173.68762 * 21 20 19 24 24 H 1.09006 * 109.46906 * 300.00771 * 1 2 3 25 25 H 1.09006 * 109.46806 * 59.99630 * 1 2 3 26 26 H 1.08988 * 109.47567 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47247 * 59.99127 * 5 2 1 28 28 H 1.09006 * 109.46558 * 299.99173 * 5 2 1 29 29 H 0.97007 * 119.99985 * 359.97438 * 6 5 2 30 30 H 1.07991 * 120.24642 * 359.97438 * 8 7 6 31 31 H 0.97000 * 120.00418 * 180.02562 * 13 12 10 32 32 H 1.08007 * 120.01806 * 180.29539 * 18 9 8 33 33 H 1.07996 * 119.75399 * 179.75519 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9965 1.3189 0.0000 4 9 1.9963 -0.6596 -1.1423 5 6 2.0400 -0.7214 1.2493 6 7 3.5049 -0.7208 1.2496 7 6 4.2033 -1.3251 2.2975 8 6 3.5180 -2.0314 3.2674 9 6 4.2339 -2.6375 4.3219 10 6 3.5536 -3.3582 5.3159 11 1 2.5835 -3.7839 5.1058 12 6 4.1596 -3.5331 6.6384 13 7 5.1617 -2.7938 6.9944 14 14 3.4870 -4.8223 7.8109 15 1 3.5961 -6.1649 7.1859 16 1 4.2681 -4.7986 9.0737 17 1 2.0615 -4.5279 8.1056 18 6 5.6414 -2.5175 4.3667 19 6 6.2964 -1.8106 3.4002 20 6 5.5922 -1.2155 2.3645 21 7 6.3201 -0.4573 1.3221 22 8 7.6138 -0.2440 1.4456 23 8 5.6740 0.0039 0.2713 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0275 0.0005 27 1 1.6765 -1.7489 1.2493 28 1 1.6767 -0.2074 2.1393 29 1 3.9900 -0.3008 0.5221 30 1 2.4427 -2.1184 3.2193 31 1 5.5631 -2.9098 7.8698 32 1 6.1981 -2.9820 5.1673 33 1 7.3716 -1.7178 3.4399 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162233364.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:59 Heat of formation + Delta-G solvation = -91.678357 kcal Electronic energy + Delta-G solvation = -22503.159234 eV Core-core repulsion = 18588.306796 eV Total energy + Delta-G solvation = -3914.852438 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.02051 -48.04643 -40.62716 -38.52094 -37.25926 -35.74613 -34.64016 -33.19033 -32.50814 -30.28707 -28.68698 -27.16114 -25.36449 -23.42902 -22.73786 -22.12453 -19.92327 -18.93949 -18.69679 -18.55853 -17.98281 -17.53589 -17.30309 -16.48460 -16.37723 -16.08711 -15.30800 -15.08984 -14.92906 -14.73277 -14.66571 -14.39697 -14.05838 -13.80591 -13.61952 -13.34243 -13.13189 -13.08471 -12.93205 -12.82735 -12.04074 -11.95882 -11.81477 -11.62944 -11.48255 -11.43311 -11.28362 -10.99923 -10.09180 -9.27385 -8.63097 -6.91656 -1.09713 0.76440 1.05915 1.12580 1.40798 1.57057 1.62483 2.08073 2.30617 2.33529 2.72325 3.12649 3.24141 3.41606 3.64466 3.90913 4.33868 4.37547 4.42410 4.47346 4.58760 4.61999 4.78925 4.81082 4.81988 5.02543 5.09165 5.37450 5.51497 5.55955 5.73581 5.94207 6.15832 6.24427 6.51457 6.57248 6.81442 7.60033 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.016074 B = 0.005277 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.573766 B = 5304.350238 C = 6792.862309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.266 3.734 3 F -0.217 7.217 4 F -0.215 7.215 5 C 0.075 3.925 6 N -0.745 5.745 7 C 0.272 3.728 8 C -0.293 4.293 9 C 0.076 3.924 10 C -0.301 4.301 11 H 0.140 0.860 12 C 0.020 3.980 13 N -0.718 5.718 14 Si 1.010 2.990 15 H -0.249 1.249 16 H -0.264 1.264 17 H -0.242 1.242 18 C -0.128 4.128 19 C -0.083 4.083 20 C -0.127 4.127 21 N 0.052 4.948 22 O -0.415 6.415 23 O -0.412 6.412 24 H 0.113 0.887 25 H 0.091 0.909 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.107 0.893 29 H 0.406 0.594 30 H 0.150 0.850 31 H 0.325 0.675 32 H 0.142 0.858 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.532 -6.112 5.709 17.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.230 3.770 3 F -0.199 7.199 4 F -0.196 7.196 5 C -0.049 4.049 6 N -0.391 5.391 7 C 0.163 3.837 8 C -0.322 4.322 9 C 0.071 3.929 10 C -0.325 4.325 11 H 0.158 0.842 12 C -0.212 4.212 13 N -0.337 5.337 14 Si 0.827 3.173 15 H -0.172 1.172 16 H -0.188 1.188 17 H -0.165 1.165 18 C -0.151 4.151 19 C -0.103 4.103 20 C -0.244 4.244 21 N 0.434 4.566 22 O -0.544 6.544 23 O -0.533 6.533 24 H 0.131 0.869 25 H 0.110 0.890 26 H 0.134 0.866 27 H 0.133 0.867 28 H 0.125 0.875 29 H 0.256 0.744 30 H 0.168 0.832 31 H 0.139 0.861 32 H 0.159 0.841 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.373 -5.828 5.619 17.374 hybrid contribution 1.315 0.633 -0.629 1.589 sum -14.058 -5.195 4.990 15.796 Atomic orbital electron populations 1.22759 0.86178 1.07709 1.06988 1.22035 0.97003 0.74784 0.83197 1.93001 1.91198 1.38817 1.96859 1.93001 1.91184 1.81139 1.54300 1.22723 0.81340 1.03546 0.97299 1.46096 1.06131 1.61644 1.25215 1.17431 0.86845 0.90799 0.88613 1.20552 0.99455 1.11927 1.00267 1.17971 0.91692 0.90449 0.92782 1.22454 1.03137 1.14533 0.92408 0.84249 1.28964 0.93500 0.97848 1.00899 1.69078 1.13658 1.28422 1.22537 0.84758 0.80267 0.76848 0.75468 1.17220 1.18830 1.16533 1.21409 0.95001 1.01225 0.97452 1.20039 0.99403 0.97722 0.93125 1.20242 0.90730 1.16387 0.97042 1.49869 1.01895 1.02281 1.02586 1.96015 0.94303 1.74875 1.89158 1.95598 1.66791 1.66230 1.24659 0.86879 0.89050 0.86565 0.86741 0.87491 0.74412 0.83234 0.86079 0.84072 0.86898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.69 9.38 71.98 0.68 -2.02 16 2 C 0.27 7.33 2.06 30.60 0.06 7.39 16 3 F -0.22 -7.47 16.92 44.97 0.76 -6.70 16 4 F -0.21 -7.16 16.92 44.97 0.76 -6.40 16 5 C 0.08 2.18 4.47 86.38 0.39 2.56 16 6 N -0.74 -31.61 5.48 -339.55 -1.86 -33.47 16 7 C 0.27 12.42 6.63 38.18 0.25 12.68 16 8 C -0.29 -11.38 9.08 22.97 0.21 -11.17 16 9 C 0.08 3.02 5.62 -21.29 -0.12 2.90 16 10 C -0.30 -9.82 9.31 24.95 0.23 -9.59 16 11 H 0.14 3.69 7.98 -2.91 -0.02 3.67 16 12 C 0.02 0.61 5.36 87.20 0.47 1.07 16 13 N -0.72 -23.91 10.93 23.21 0.25 -23.66 16 14 Si 1.01 20.73 29.67 68.60 2.04 22.77 16 15 H -0.25 -5.12 7.11 99.48 0.71 -4.42 16 16 H -0.26 -5.37 7.11 99.48 0.71 -4.67 16 17 H -0.24 -4.68 7.11 99.48 0.71 -3.98 16 18 C -0.13 -5.51 8.72 22.62 0.20 -5.31 16 19 C -0.08 -4.02 9.50 21.96 0.21 -3.82 16 20 C -0.13 -6.71 6.92 36.78 0.25 -6.46 16 21 N 0.05 3.14 4.98 -45.50 -0.23 2.91 16 22 O -0.41 -26.44 19.14 3.51 0.07 -26.37 16 23 O -0.41 -25.21 16.29 3.53 0.06 -25.15 16 24 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.11 2.66 7.71 -2.39 -0.02 2.64 16 28 H 0.11 2.64 8.13 -2.38 -0.02 2.62 16 29 H 0.41 19.90 4.56 -112.86 -0.51 19.38 16 30 H 0.15 4.62 6.72 -2.92 -0.02 4.60 16 31 H 0.32 9.15 8.27 -92.71 -0.77 8.38 16 32 H 0.14 5.74 6.07 -2.91 -0.02 5.72 16 33 H 0.11 5.54 7.57 -2.91 -0.02 5.51 16 Total: -1.00 -70.03 300.14 5.34 -64.70 By element: Atomic # 1 Polarization: 42.47 SS G_CDS: 0.66 Total: 43.13 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: 2.83 Total: -11.76 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -1.83 Total: -54.21 kcal Atomic # 8 Polarization: -51.64 SS G_CDS: 0.12 Total: -51.52 kcal Atomic # 9 Polarization: -14.63 SS G_CDS: 1.52 Total: -13.11 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: 2.04 Total: 22.77 kcal Total: -70.03 5.34 -64.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162233364.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.980 kcal (2) G-P(sol) polarization free energy of solvation -70.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds