Wall clock time and date at job start Tue Mar 31 2020 05:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30751 * 1 3 3 Si 1.86803 * 119.99415 * 2 1 4 4 H 1.48500 * 109.47251 * 275.38930 * 3 2 1 5 5 H 1.48494 * 109.47072 * 35.39389 * 3 2 1 6 6 H 1.48504 * 109.46768 * 155.39260 * 3 2 1 7 7 C 1.40021 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00315 * 341.62651 * 7 2 1 9 9 C 1.41550 * 119.99778 * 161.62050 * 7 2 1 10 10 C 1.41188 * 120.99716 * 330.85062 * 9 7 2 11 11 C 1.36553 * 119.14659 * 179.97438 * 10 9 7 12 12 N 1.32097 * 121.27111 * 0.02562 * 11 10 9 13 13 C 1.32526 * 122.21324 * 359.97438 * 12 11 10 14 14 N 1.39082 * 119.65471 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99921 * 179.72614 * 14 13 12 16 16 H 1.08994 * 110.29253 * 325.97319 * 15 14 13 17 17 C 1.54144 * 110.32202 * 203.84247 * 15 14 13 18 18 C 1.54478 * 101.60591 * 267.65417 * 17 15 14 19 19 C 1.52109 * 104.86240 * 333.52107 * 18 17 15 20 20 S 1.76538 * 139.39919 * 197.44667 * 19 18 17 21 21 C 1.75579 * 91.07963 * 179.97438 * 20 19 18 22 22 C 1.32625 * 109.65240 * 0.02562 * 21 20 19 23 23 C 1.33820 * 110.67508 * 17.41757 * 19 18 17 24 24 C 1.38740 * 120.68950 * 0.25331 * 13 12 11 25 25 H 0.96994 * 120.00179 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.42404 * 359.97438 * 10 9 7 27 27 H 1.08008 * 119.36336 * 180.02562 * 11 10 9 28 28 H 0.97007 * 119.99833 * 0.02562 * 14 13 12 29 29 H 1.08995 * 110.98041 * 25.80978 * 17 15 14 30 30 H 1.09008 * 110.97169 * 149.58305 * 17 15 14 31 31 H 1.09001 * 110.35444 * 214.67243 * 18 17 15 32 32 H 1.09000 * 110.45429 * 92.41944 * 18 17 15 33 33 H 1.08010 * 125.17099 * 180.02562 * 21 20 19 34 34 H 1.08003 * 122.18007 * 180.02562 * 22 21 20 35 35 H 1.07999 * 120.66722 * 179.73821 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6179 0.0000 4 1 2.3749 2.1123 -1.3939 5 1 1.5004 2.6171 0.8109 6 1 3.5913 1.4101 0.5830 7 6 2.0077 -1.2126 0.0005 8 1 1.5091 -2.1240 0.2958 9 6 3.3690 -1.2439 -0.3860 10 6 3.8839 -0.3098 -1.3110 11 6 5.2034 -0.3742 -1.6568 12 7 6.0027 -1.2920 -1.1433 13 6 5.5749 -2.1937 -0.2714 14 7 6.4629 -3.1366 0.2353 15 6 5.9994 -4.1330 1.2040 16 1 5.2329 -3.7045 1.8496 17 6 7.1817 -4.6503 2.0471 18 6 7.6235 -5.8885 1.2360 19 6 6.3707 -6.3412 0.5016 20 16 5.7484 -7.7658 -0.3349 21 6 4.2368 -6.9428 -0.6818 22 6 4.2730 -5.7144 -0.1831 23 6 5.4564 -5.3642 0.4804 24 6 4.2490 -2.2104 0.1369 25 1 -0.4850 0.8400 -0.0004 26 1 3.2424 0.4460 -1.7395 27 1 5.6010 0.3389 -2.3638 28 1 7.3902 -3.1317 -0.0496 29 1 7.9794 -3.9092 2.0967 30 1 6.8530 -4.9349 3.0467 31 1 7.9759 -6.6738 1.9047 32 1 8.4039 -5.6191 0.5243 33 1 3.4040 -7.3717 -1.2195 34 1 3.4440 -5.0292 -0.2810 35 1 3.8998 -2.9480 0.8443 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162766649.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:14 Heat of formation + Delta-G solvation = 73.762998 kcal Electronic energy + Delta-G solvation = -19635.375522 eV Core-core repulsion = 16724.679560 eV Total energy + Delta-G solvation = -2910.695961 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.79296 -38.37103 -35.19558 -34.03547 -33.08270 -31.23106 -28.69873 -27.66961 -26.60708 -25.81561 -22.35251 -21.99847 -21.09424 -20.59772 -18.27575 -17.81138 -17.14429 -16.12380 -15.67892 -15.37197 -14.63695 -14.25380 -14.20948 -13.77841 -13.61800 -13.07246 -13.01916 -12.75497 -12.63072 -12.38057 -11.78440 -11.50970 -11.45949 -11.28969 -10.99308 -10.96135 -10.78013 -10.68607 -10.53337 -9.77549 -9.42358 -9.13620 -8.44121 -8.21296 -8.18376 -8.05458 -7.00845 -6.73460 -4.65669 1.17295 1.62763 2.14309 2.63133 2.79095 2.87796 3.12616 3.22135 3.33555 3.96831 4.00875 4.48605 4.55923 4.67894 5.00634 5.08228 5.45587 5.49243 5.55990 5.57872 5.71211 5.82075 5.86719 5.95395 6.03673 6.31522 6.46206 6.54528 6.57342 6.67005 6.71739 6.74495 7.11058 7.27958 7.62198 7.77874 7.98460 8.26231 8.50775 8.60005 8.76524 9.52026 10.00961 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.022802 B = 0.004813 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.668627 B = 5816.564186 C = 6412.219264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.088 3.912 3 Si 0.916 3.084 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.246 1.246 7 C -0.442 4.442 8 H 0.091 0.909 9 C 0.138 3.862 10 C -0.316 4.316 11 C 0.148 3.852 12 N -0.621 5.621 13 C 0.407 3.593 14 N -0.727 5.727 15 C 0.220 3.780 16 H 0.092 0.908 17 C -0.123 4.123 18 C -0.042 4.042 19 C -0.201 4.201 20 S 0.091 5.909 21 C -0.218 4.218 22 C -0.096 4.096 23 C -0.123 4.123 24 C -0.322 4.322 25 H 0.286 0.714 26 H 0.104 0.896 27 H 0.123 0.877 28 H 0.391 0.609 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.165 0.835 34 H 0.144 0.856 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.150 -10.048 2.882 14.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.132 4.132 3 Si 0.743 3.257 4 H -0.195 1.195 5 H -0.219 1.219 6 H -0.169 1.169 7 C -0.472 4.472 8 H 0.109 0.891 9 C 0.130 3.870 10 C -0.341 4.341 11 C -0.004 4.004 12 N -0.344 5.344 13 C 0.178 3.822 14 N -0.361 5.361 15 C 0.111 3.889 16 H 0.109 0.891 17 C -0.162 4.162 18 C -0.081 4.081 19 C -0.319 4.319 20 S 0.355 5.645 21 C -0.353 4.353 22 C -0.126 4.126 23 C -0.137 4.137 24 C -0.348 4.348 25 H 0.097 0.903 26 H 0.122 0.878 27 H 0.141 0.859 28 H 0.226 0.774 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.182 0.818 34 H 0.161 0.839 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 11.165 -11.534 2.410 16.233 hybrid contribution -1.194 2.073 0.132 2.396 sum 9.971 -9.461 2.542 13.978 Atomic orbital electron populations 1.69662 1.08212 1.30455 1.34320 1.26173 0.94658 1.01929 0.90442 0.86241 0.81154 0.79414 0.78888 1.19481 1.21921 1.16934 1.19456 0.92942 0.96134 1.38703 0.89107 1.17691 0.92660 0.89148 0.87523 1.21508 0.97201 1.07345 1.08012 1.21300 0.90140 0.93606 0.95338 1.66818 1.39419 1.09747 1.18441 1.18004 0.87482 0.87207 0.89498 1.44158 1.10895 1.32083 1.48934 1.20071 0.95492 0.84877 0.88447 0.89056 1.22615 0.98052 0.96903 0.98676 1.20838 0.92957 0.97111 0.97216 1.25775 1.01843 0.97353 1.06899 1.83783 1.10469 1.15161 1.55105 1.25257 1.01482 0.98757 1.09801 1.19890 0.98693 0.96067 0.97962 1.21099 0.93653 0.97079 1.01874 1.21123 0.92213 1.09544 1.11946 0.90320 0.87814 0.85916 0.77420 0.89343 0.89404 0.90741 0.90202 0.81782 0.83862 0.87672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.03 13.92 55.55 0.77 -20.26 16 2 C 0.09 2.29 5.42 -17.34 -0.09 2.20 16 3 Si 0.92 20.77 24.54 -169.99 -4.17 16.60 16 4 H -0.27 -5.89 6.71 56.52 0.38 -5.51 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.25 -5.81 6.85 56.52 0.39 -5.42 16 7 C -0.44 -11.84 9.63 -37.65 -0.36 -12.20 16 8 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 9 C 0.14 3.52 5.13 -106.55 -0.55 2.98 16 10 C -0.32 -7.71 7.24 -39.07 -0.28 -7.99 16 11 C 0.15 3.38 11.10 -18.05 -0.20 3.18 16 12 N -0.62 -14.28 10.37 -12.82 -0.13 -14.41 16 13 C 0.41 8.93 7.65 -154.98 -1.19 7.75 16 14 N -0.73 -12.69 5.28 -53.51 -0.28 -12.97 16 15 C 0.22 3.29 2.86 -67.44 -0.19 3.10 16 16 H 0.09 1.47 6.47 -51.93 -0.34 1.14 16 17 C -0.12 -1.32 6.72 -25.36 -0.17 -1.49 16 18 C -0.04 -0.44 6.81 -26.41 -0.18 -0.62 16 19 C -0.20 -2.70 7.35 -35.16 -0.26 -2.96 16 20 S 0.09 1.13 23.35 -107.50 -2.51 -1.38 16 21 C -0.22 -3.02 11.18 28.83 0.32 -2.70 16 22 C -0.10 -1.55 10.17 -40.77 -0.41 -1.96 16 23 C -0.12 -1.90 6.18 -104.42 -0.65 -2.54 16 24 C -0.32 -7.53 9.03 -38.43 -0.35 -7.88 16 25 H 0.29 6.78 8.29 -40.82 -0.34 6.45 16 26 H 0.10 2.49 4.76 -52.49 -0.25 2.24 16 27 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 28 H 0.39 6.29 8.73 -40.82 -0.36 5.93 16 29 H 0.09 0.86 8.06 -51.93 -0.42 0.44 16 30 H 0.09 0.82 8.14 -51.92 -0.42 0.39 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.16 1.90 8.06 -52.48 -0.42 1.48 16 34 H 0.14 2.50 8.06 -52.48 -0.42 2.08 16 35 H 0.11 2.34 6.24 -52.49 -0.33 2.01 16 LS Contribution 303.81 15.07 4.58 4.58 Total: -1.00 -28.90 303.81 -10.12 -39.03 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -3.82 Total: 9.97 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -4.56 Total: -21.16 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.36 Total: -47.64 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.17 Total: 16.60 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.51 Total: -1.38 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.90 -10.12 -39.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162766649.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.789 kcal (2) G-P(sol) polarization free energy of solvation -28.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds