Wall clock time and date at job start Tue Mar 31 2020 05:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30751 * 1 3 3 Si 1.86803 * 119.99415 * 2 1 4 4 H 1.48500 * 109.47251 * 275.38930 * 3 2 1 5 5 H 1.48494 * 109.47072 * 35.39389 * 3 2 1 6 6 H 1.48504 * 109.46768 * 155.39260 * 3 2 1 7 7 C 1.40021 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00315 * 341.62651 * 7 2 1 9 9 C 1.41550 * 119.99778 * 161.62050 * 7 2 1 10 10 C 1.41188 * 120.99716 * 330.85062 * 9 7 2 11 11 C 1.36553 * 119.14659 * 179.97438 * 10 9 7 12 12 N 1.32097 * 121.27111 * 0.02562 * 11 10 9 13 13 C 1.32526 * 122.21324 * 359.97438 * 12 11 10 14 14 N 1.39082 * 119.65471 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99921 * 179.72614 * 14 13 12 16 16 H 1.08994 * 110.29253 * 325.97319 * 15 14 13 17 17 C 1.54144 * 110.32202 * 203.84247 * 15 14 13 18 18 C 1.54478 * 101.60591 * 267.65417 * 17 15 14 19 19 C 1.52109 * 104.86240 * 333.52107 * 18 17 15 20 20 S 1.76538 * 139.39919 * 197.44667 * 19 18 17 21 21 C 1.75579 * 91.07963 * 179.97438 * 20 19 18 22 22 C 1.32625 * 109.65240 * 0.02562 * 21 20 19 23 23 C 1.33820 * 110.67508 * 17.41757 * 19 18 17 24 24 C 1.38740 * 120.68950 * 0.25331 * 13 12 11 25 25 H 0.96994 * 120.00179 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.42404 * 359.97438 * 10 9 7 27 27 H 1.08008 * 119.36336 * 180.02562 * 11 10 9 28 28 H 0.97007 * 119.99833 * 0.02562 * 14 13 12 29 29 H 1.08995 * 110.98041 * 25.80978 * 17 15 14 30 30 H 1.09008 * 110.97169 * 149.58305 * 17 15 14 31 31 H 1.09001 * 110.35444 * 214.67243 * 18 17 15 32 32 H 1.09000 * 110.45429 * 92.41944 * 18 17 15 33 33 H 1.08010 * 125.17099 * 180.02562 * 21 20 19 34 34 H 1.08003 * 122.18007 * 180.02562 * 22 21 20 35 35 H 1.07999 * 120.66722 * 179.73821 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6179 0.0000 4 1 2.3749 2.1123 -1.3939 5 1 1.5004 2.6171 0.8109 6 1 3.5913 1.4101 0.5830 7 6 2.0077 -1.2126 0.0005 8 1 1.5091 -2.1240 0.2958 9 6 3.3690 -1.2439 -0.3860 10 6 3.8839 -0.3098 -1.3110 11 6 5.2034 -0.3742 -1.6568 12 7 6.0027 -1.2920 -1.1433 13 6 5.5749 -2.1937 -0.2714 14 7 6.4629 -3.1366 0.2353 15 6 5.9994 -4.1330 1.2040 16 1 5.2329 -3.7045 1.8496 17 6 7.1817 -4.6503 2.0471 18 6 7.6235 -5.8885 1.2360 19 6 6.3707 -6.3412 0.5016 20 16 5.7484 -7.7658 -0.3349 21 6 4.2368 -6.9428 -0.6818 22 6 4.2730 -5.7144 -0.1831 23 6 5.4564 -5.3642 0.4804 24 6 4.2490 -2.2104 0.1369 25 1 -0.4850 0.8400 -0.0004 26 1 3.2424 0.4460 -1.7395 27 1 5.6010 0.3389 -2.3638 28 1 7.3902 -3.1317 -0.0496 29 1 7.9794 -3.9092 2.0967 30 1 6.8530 -4.9349 3.0467 31 1 7.9759 -6.6738 1.9047 32 1 8.4039 -5.6191 0.5243 33 1 3.4040 -7.3717 -1.2195 34 1 3.4440 -5.0292 -0.2810 35 1 3.8998 -2.9480 0.8443 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162766649.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:13 Heat of formation + Delta-G solvation = 57.180304 kcal Electronic energy + Delta-G solvation = -19636.094601 eV Core-core repulsion = 16724.679560 eV Total energy + Delta-G solvation = -2911.415041 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.07561 -40.00033 -36.58539 -35.77552 -34.48036 -33.13172 -30.27886 -28.71697 -28.05419 -27.59417 -23.68336 -23.41194 -22.88439 -21.79906 -19.70407 -19.41585 -18.28807 -17.82591 -17.22181 -16.94681 -16.05510 -15.86941 -15.66130 -15.16273 -14.97020 -14.67678 -14.55103 -14.38788 -13.80352 -13.60981 -13.32261 -12.85579 -12.78884 -12.76358 -12.56265 -12.43206 -12.07004 -11.92936 -11.88546 -11.65540 -11.25868 -10.76790 -10.10587 -9.92529 -9.51465 -9.27123 -8.96500 -8.39284 -6.69002 0.06995 0.58430 0.77736 0.95054 1.04917 1.28117 1.42538 1.50399 1.62929 2.12581 2.59967 2.68349 3.46918 3.54860 3.70422 4.01305 4.14876 4.20423 4.46332 4.52150 4.57952 4.58931 4.67120 4.78842 4.87469 4.88051 4.91963 5.04245 5.16778 5.19334 5.29435 5.39280 5.41965 5.53734 5.74997 5.92941 6.23470 6.34667 6.64831 6.76800 6.95649 7.72067 8.11152 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.022802 B = 0.004813 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.668627 B = 5816.564186 C = 6412.219264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.055 3.945 3 Si 0.972 3.028 4 H -0.252 1.252 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.477 4.477 8 H 0.056 0.944 9 C 0.123 3.877 10 C -0.334 4.334 11 C 0.151 3.849 12 N -0.623 5.623 13 C 0.410 3.590 14 N -0.712 5.712 15 C 0.212 3.788 16 H 0.069 0.931 17 C -0.110 4.110 18 C -0.039 4.039 19 C -0.196 4.196 20 S 0.145 5.855 21 C -0.225 4.225 22 C -0.129 4.129 23 C -0.158 4.158 24 C -0.333 4.333 25 H 0.297 0.703 26 H 0.107 0.893 27 H 0.161 0.839 28 H 0.402 0.598 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.180 0.820 34 H 0.111 0.889 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.381 -10.556 2.892 17.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.162 4.162 3 Si 0.795 3.205 4 H -0.177 1.177 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.507 4.507 8 H 0.075 0.925 9 C 0.115 3.885 10 C -0.359 4.359 11 C -0.002 4.002 12 N -0.346 5.346 13 C 0.179 3.821 14 N -0.346 5.346 15 C 0.103 3.897 16 H 0.087 0.913 17 C -0.149 4.149 18 C -0.078 4.078 19 C -0.314 4.314 20 S 0.409 5.591 21 C -0.359 4.359 22 C -0.159 4.159 23 C -0.172 4.172 24 C -0.360 4.360 25 H 0.108 0.892 26 H 0.125 0.875 27 H 0.178 0.822 28 H 0.238 0.762 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.197 0.803 34 H 0.129 0.871 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 14.405 -12.085 2.435 18.960 hybrid contribution -2.105 2.013 0.118 2.915 sum 12.301 -10.072 2.553 16.102 Atomic orbital electron populations 1.69675 1.09224 1.31859 1.35541 1.26831 0.95282 1.04289 0.89767 0.85405 0.79162 0.76165 0.79777 1.17732 1.20153 1.18485 1.19426 0.94115 0.95756 1.41416 0.92533 1.17884 0.92395 0.90259 0.87943 1.21598 0.98226 1.07608 1.08422 1.21868 0.89509 0.93722 0.95106 1.67008 1.39326 1.09870 1.18422 1.18220 0.87652 0.87486 0.88744 1.44249 1.10674 1.31202 1.48430 1.20346 0.97043 0.84232 0.88044 0.91293 1.22639 0.96405 0.97237 0.98661 1.20987 0.91655 0.97553 0.97602 1.26305 1.02388 0.97084 1.05627 1.83585 1.08302 1.13534 1.53653 1.25545 1.03167 0.98300 1.08921 1.19870 0.98811 0.96848 1.00399 1.21070 0.94188 0.98143 1.03754 1.21189 0.93087 1.09332 1.12369 0.89217 0.87525 0.82190 0.76175 0.87660 0.87619 0.87851 0.88873 0.80269 0.87104 0.87931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.48 13.92 21.84 0.30 -45.17 16 2 C 0.06 2.96 5.42 85.29 0.46 3.43 16 3 Si 0.97 43.03 24.54 68.60 1.68 44.71 16 4 H -0.25 -10.43 6.71 99.48 0.67 -9.76 16 5 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.26 -12.08 6.85 99.48 0.68 -11.40 16 7 C -0.48 -27.14 9.63 23.52 0.23 -26.91 16 8 H 0.06 3.47 8.06 -2.91 -0.02 3.44 16 9 C 0.12 6.53 5.13 -21.12 -0.11 6.43 16 10 C -0.33 -16.27 7.24 22.60 0.16 -16.11 16 11 C 0.15 6.63 11.10 84.26 0.94 7.56 16 12 N -0.62 -27.72 10.37 -194.47 -2.02 -29.74 16 13 C 0.41 17.93 7.65 132.90 1.02 18.94 16 14 N -0.71 -24.06 5.28 -323.21 -1.71 -25.77 16 15 C 0.21 6.18 2.86 45.31 0.13 6.31 16 16 H 0.07 2.30 6.47 -2.39 -0.02 2.29 16 17 C -0.11 -2.03 6.72 31.48 0.21 -1.82 16 18 C -0.04 -0.66 6.81 30.80 0.21 -0.45 16 19 C -0.20 -4.80 7.35 25.13 0.18 -4.62 16 20 S 0.14 3.27 23.35 -56.49 -1.32 1.95 16 21 C -0.22 -6.19 11.18 66.66 0.75 -5.44 16 22 C -0.13 -4.35 10.17 21.56 0.22 -4.13 16 23 C -0.16 -4.84 6.18 -19.74 -0.12 -4.96 16 24 C -0.33 -16.22 9.03 23.01 0.21 -16.01 16 25 H 0.30 14.37 8.29 -92.71 -0.77 13.61 16 26 H 0.11 5.06 4.76 -2.91 -0.01 5.05 16 27 H 0.16 5.75 8.06 -2.91 -0.02 5.72 16 28 H 0.40 11.94 8.73 -92.70 -0.81 11.13 16 29 H 0.11 1.63 8.06 -2.39 -0.02 1.61 16 30 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.18 4.15 8.06 -2.91 -0.02 4.12 16 34 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 35 H 0.10 4.93 6.24 -2.91 -0.02 4.91 16 Total: -1.00 -64.83 303.81 1.69 -63.14 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.26 Total: 28.66 kcal Atomic # 6 Polarization: -42.26 SS G_CDS: 4.48 Total: -37.78 kcal Atomic # 7 Polarization: -97.26 SS G_CDS: -3.42 Total: -100.68 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.68 Total: 44.71 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.32 Total: 1.95 kcal Total: -64.83 1.69 -63.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162766649.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.322 kcal (2) G-P(sol) polarization free energy of solvation -64.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds