Wall clock time and date at job start Tue Mar 31 2020 05:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29326 * 1 3 3 Si 1.86807 * 120.00036 * 2 1 4 4 H 1.48497 * 109.47120 * 269.99646 * 3 2 1 5 5 H 1.48501 * 109.46758 * 30.00069 * 3 2 1 6 6 H 1.48508 * 109.46971 * 149.99732 * 3 2 1 7 7 C 1.46777 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00273 * 359.97438 * 7 2 1 9 9 N 1.32773 * 119.99864 * 180.02562 * 7 2 1 10 10 C 1.38914 * 119.99576 * 179.97438 * 9 7 2 11 11 C 1.39648 * 120.05086 * 0.02739 * 10 9 7 12 12 C 1.38358 * 118.01258 * 179.70185 * 11 10 9 13 13 C 1.39870 * 117.97335 * 0.52383 * 12 11 10 14 14 C 1.48271 * 120.10098 * 179.73469 * 13 12 11 15 15 C 1.39425 * 120.12391 * 4.73023 * 14 13 12 16 16 C 1.37975 * 119.87636 * 180.02562 * 15 14 13 17 17 C 1.38369 * 120.12187 * 0.02562 * 16 15 14 18 18 C 1.38314 * 120.25639 * 359.95857 * 17 16 15 19 19 N 1.48012 * 119.93407 * 180.02562 * 18 17 16 20 20 O 1.31696 * 119.99915 * 180.02562 * 19 18 17 21 21 O 1.31703 * 119.99921 * 0.02562 * 19 18 17 22 22 C 1.38018 * 120.12879 * 0.04558 * 18 17 16 23 23 N 1.32756 * 119.80594 * 359.46602 * 13 12 11 24 24 N 1.28353 * 122.12340 * 0.27471 * 23 13 12 25 25 H 0.97009 * 120.00056 * 0.02562 * 1 2 3 26 26 H 0.96996 * 120.00347 * 0.02562 * 9 7 2 27 27 H 1.08004 * 120.99372 * 359.95202 * 11 10 9 28 28 H 1.08003 * 121.01477 * 180.26043 * 12 11 10 29 29 H 1.08005 * 120.06286 * 359.74114 * 15 14 13 30 30 H 1.08000 * 119.94234 * 179.97438 * 16 15 14 31 31 H 1.08001 * 119.86712 * 179.97438 * 17 16 15 32 32 H 1.08001 * 120.06706 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2933 0.0000 0.0000 3 14 2.2273 1.6178 0.0000 4 1 2.4749 2.0464 -1.4000 5 1 1.4247 2.6527 0.7001 6 1 3.5249 1.4402 0.7001 7 6 2.0272 -1.2711 0.0006 8 1 1.4872 -2.2064 0.0014 9 7 3.3549 -1.2711 0.0011 10 6 4.0494 -2.4741 0.0022 11 6 3.3522 -3.6841 0.0021 12 6 4.0861 -4.8570 -0.0031 13 6 5.4813 -4.7579 0.0032 14 6 6.3139 -5.9848 0.0039 15 6 5.7128 -7.2384 -0.1012 16 6 6.4925 -8.3768 -0.0995 17 6 7.8684 -8.2759 0.0068 18 6 8.4702 -7.0349 0.1110 19 7 9.9427 -6.9353 0.2237 20 8 10.5170 -5.7544 0.3235 21 8 10.6785 -8.0276 0.2243 22 6 7.7004 -5.8894 0.1104 23 7 6.0579 -3.5621 0.0032 24 7 5.3753 -2.4752 0.0027 25 1 -0.4851 0.8401 -0.0004 26 1 3.8399 -0.4311 0.0015 27 1 2.2723 -3.7038 0.0020 28 1 3.5967 -5.8197 -0.0076 29 1 4.6386 -7.3185 -0.1791 30 1 6.0279 -9.3484 -0.1804 31 1 8.4747 -9.1697 0.0081 32 1 8.1713 -4.9209 0.1923 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182515.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:23 Heat of formation + Delta-G solvation = 118.496636 kcal Electronic energy + Delta-G solvation = -20478.940049 eV Core-core repulsion = 17023.890670 eV Total energy + Delta-G solvation = -3455.049380 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.35044 -39.58496 -38.10182 -36.48834 -34.33155 -33.38513 -32.91021 -31.71938 -31.35558 -29.08216 -26.64420 -25.34293 -24.01384 -22.92957 -22.12688 -21.16098 -19.22280 -18.45366 -17.92932 -17.39786 -16.52119 -16.27305 -15.87360 -15.48248 -15.21204 -14.81767 -14.31339 -14.07515 -13.75427 -13.44807 -13.08889 -12.96767 -12.46679 -12.11754 -12.05266 -11.68032 -11.29767 -11.23439 -11.12674 -11.02942 -10.64801 -10.59316 -10.43316 -9.97349 -9.58809 -9.50040 -9.06043 -8.68969 -7.70031 -7.36103 -4.12182 -0.59250 0.72628 1.19516 1.23919 1.86660 2.03855 2.66675 2.67945 2.71258 3.40261 3.40533 4.02141 4.13462 4.39338 4.48956 4.72722 4.75236 4.83031 4.95321 5.15130 5.33848 5.53888 5.60723 5.76563 5.79631 5.83625 5.92344 6.05863 6.21871 6.37555 6.47967 6.66687 6.86253 6.91548 6.93209 7.30009 7.61952 8.50225 8.61592 9.66243 9.83204 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.033980 B = 0.003217 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.813515 B = 8702.596218 C = 9513.594344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.060 3.940 3 Si 0.888 3.112 4 H -0.256 1.256 5 H -0.263 1.263 6 H -0.253 1.253 7 C -0.329 4.329 8 H 0.129 0.871 9 N -0.474 5.474 10 C 0.238 3.762 11 C -0.187 4.187 12 C -0.064 4.064 13 C -0.084 4.084 14 C 0.030 3.970 15 C -0.081 4.081 16 C -0.108 4.108 17 C -0.085 4.085 18 C 0.002 3.998 19 N -0.015 5.015 20 O -0.168 6.168 21 O -0.186 6.186 22 C -0.048 4.048 23 N -0.166 5.166 24 N -0.336 5.336 25 H 0.298 0.702 26 H 0.389 0.611 27 H 0.137 0.863 28 H 0.126 0.874 29 H 0.142 0.858 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.031 -9.556 -0.321 10.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.161 4.161 3 Si 0.710 3.290 4 H -0.180 1.180 5 H -0.187 1.187 6 H -0.177 1.177 7 C -0.462 4.462 8 H 0.147 0.853 9 N -0.072 5.072 10 C -0.007 4.007 11 C -0.219 4.219 12 C -0.090 4.090 13 C -0.230 4.230 14 C 0.027 3.973 15 C -0.101 4.101 16 C -0.127 4.127 17 C -0.106 4.106 18 C -0.084 4.084 19 N 0.464 4.536 20 O -0.364 6.364 21 O -0.378 6.378 22 C -0.069 4.069 23 N -0.018 5.018 24 N -0.200 5.200 25 H 0.111 0.889 26 H 0.224 0.776 27 H 0.155 0.845 28 H 0.144 0.856 29 H 0.160 0.840 30 H 0.163 0.837 31 H 0.165 0.835 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.017 -8.358 -0.369 8.894 hybrid contribution -0.675 0.325 0.047 0.750 sum 2.342 -8.033 -0.322 8.374 Atomic orbital electron populations 1.68574 1.07814 1.31101 1.34285 1.26809 0.95276 0.99394 0.94608 0.86464 0.80860 0.81022 0.80649 1.18045 1.18705 1.17671 1.20611 0.80008 0.96063 1.49567 0.85343 1.39799 1.06125 1.04869 1.56368 1.19425 0.90654 0.86523 1.04084 1.21321 1.00849 0.90979 1.08751 1.21596 0.93088 0.98225 0.96114 1.19796 0.91118 0.92068 1.20032 1.18226 0.90633 0.92141 0.96335 1.21641 1.01254 0.91218 0.95973 1.21008 0.91762 0.99415 1.00524 1.20964 0.95761 0.95758 0.98087 1.20290 0.76364 0.96940 1.14787 1.50555 1.04881 1.02526 0.95652 1.96294 1.76294 1.09056 1.54763 1.96233 1.63450 1.21733 1.56339 1.21208 0.93223 0.98286 0.94198 1.72492 1.30905 0.94541 1.03835 1.72655 1.03941 1.18994 1.24420 0.88903 0.77587 0.84497 0.85578 0.84007 0.83749 0.83450 0.82017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 55. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -17.66 13.88 56.00 0.78 -16.88 16 2 C 0.06 1.28 5.70 -15.16 -0.09 1.19 16 3 Si 0.89 15.83 27.86 -169.99 -4.74 11.10 16 4 H -0.26 -4.54 7.11 56.52 0.40 -4.14 16 5 H -0.26 -4.58 7.11 56.52 0.40 -4.18 16 6 H -0.25 -4.43 6.62 56.52 0.37 -4.05 16 7 C -0.33 -7.27 10.30 -13.70 -0.14 -7.41 16 8 H 0.13 2.93 5.84 -52.49 -0.31 2.63 16 9 N -0.47 -10.03 5.17 -9.80 -0.05 -10.08 16 10 C 0.24 5.06 7.70 -154.75 -1.19 3.87 16 11 C -0.19 -3.56 9.39 -39.01 -0.37 -3.92 16 12 C -0.06 -1.06 9.53 -38.93 -0.37 -1.43 16 13 C -0.08 -1.50 6.80 -82.73 -0.56 -2.06 16 14 C 0.03 0.44 5.87 -104.90 -0.62 -0.17 16 15 C -0.08 -0.88 9.43 -39.24 -0.37 -1.25 16 16 C -0.11 -1.00 10.03 -39.63 -0.40 -1.40 16 17 C -0.09 -0.95 9.57 -39.51 -0.38 -1.33 16 18 C 0.00 0.03 6.88 -80.00 -0.55 -0.52 16 19 N -0.02 -0.25 4.98 33.94 0.17 -0.08 16 20 O -0.17 -3.01 19.15 -31.57 -0.60 -3.62 16 21 O -0.19 -3.04 19.14 -31.57 -0.60 -3.64 16 22 C -0.05 -0.74 9.11 -39.24 -0.36 -1.10 16 23 N -0.17 -3.43 10.63 33.38 0.35 -3.07 16 24 N -0.34 -7.38 11.53 31.26 0.36 -7.02 16 25 H 0.30 5.98 8.26 -40.82 -0.34 5.64 16 26 H 0.39 7.80 6.06 -40.82 -0.25 7.55 16 27 H 0.14 2.50 6.03 -52.48 -0.32 2.18 16 28 H 0.13 1.56 6.32 -52.48 -0.33 1.23 16 29 H 0.14 1.22 6.26 -52.48 -0.33 0.89 16 30 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 31 H 0.15 1.40 7.57 -52.49 -0.40 1.00 16 32 H 0.16 2.70 7.08 -52.49 -0.37 2.33 16 LS Contribution 294.97 15.07 4.45 4.45 Total: -1.00 -25.74 294.97 -7.16 -32.90 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -1.88 Total: 11.48 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -5.39 Total: -15.53 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 1.61 Total: -37.13 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -1.21 Total: -7.26 kcal Atomic # 14 Polarization: 15.83 SS G_CDS: -4.74 Total: 11.10 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -25.74 -7.16 -32.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182515.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.394 kcal (2) G-P(sol) polarization free energy of solvation -25.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds