Wall clock time and date at job start Tue Mar 31 2020 05:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29326 * 1 3 3 Si 1.86807 * 120.00036 * 2 1 4 4 H 1.48497 * 109.47120 * 269.99646 * 3 2 1 5 5 H 1.48501 * 109.46758 * 30.00069 * 3 2 1 6 6 H 1.48508 * 109.46971 * 149.99732 * 3 2 1 7 7 C 1.46777 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00273 * 359.97438 * 7 2 1 9 9 N 1.32773 * 119.99864 * 180.02562 * 7 2 1 10 10 C 1.38914 * 119.99576 * 179.97438 * 9 7 2 11 11 C 1.39648 * 120.05086 * 0.02739 * 10 9 7 12 12 C 1.38358 * 118.01258 * 179.70185 * 11 10 9 13 13 C 1.39870 * 117.97335 * 0.52383 * 12 11 10 14 14 C 1.48271 * 120.10098 * 179.73469 * 13 12 11 15 15 C 1.39425 * 120.12391 * 4.73023 * 14 13 12 16 16 C 1.37975 * 119.87636 * 180.02562 * 15 14 13 17 17 C 1.38369 * 120.12187 * 0.02562 * 16 15 14 18 18 C 1.38314 * 120.25639 * 359.95857 * 17 16 15 19 19 N 1.48012 * 119.93407 * 180.02562 * 18 17 16 20 20 O 1.31696 * 119.99915 * 180.02562 * 19 18 17 21 21 O 1.31703 * 119.99921 * 0.02562 * 19 18 17 22 22 C 1.38018 * 120.12879 * 0.04558 * 18 17 16 23 23 N 1.32756 * 119.80594 * 359.46602 * 13 12 11 24 24 N 1.28353 * 122.12340 * 0.27471 * 23 13 12 25 25 H 0.97009 * 120.00056 * 0.02562 * 1 2 3 26 26 H 0.96996 * 120.00347 * 0.02562 * 9 7 2 27 27 H 1.08004 * 120.99372 * 359.95202 * 11 10 9 28 28 H 1.08003 * 121.01477 * 180.26043 * 12 11 10 29 29 H 1.08005 * 120.06286 * 359.74114 * 15 14 13 30 30 H 1.08000 * 119.94234 * 179.97438 * 16 15 14 31 31 H 1.08001 * 119.86712 * 179.97438 * 17 16 15 32 32 H 1.08001 * 120.06706 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2933 0.0000 0.0000 3 14 2.2273 1.6178 0.0000 4 1 2.4749 2.0464 -1.4000 5 1 1.4247 2.6527 0.7001 6 1 3.5249 1.4402 0.7001 7 6 2.0272 -1.2711 0.0006 8 1 1.4872 -2.2064 0.0014 9 7 3.3549 -1.2711 0.0011 10 6 4.0494 -2.4741 0.0022 11 6 3.3522 -3.6841 0.0021 12 6 4.0861 -4.8570 -0.0031 13 6 5.4813 -4.7579 0.0032 14 6 6.3139 -5.9848 0.0039 15 6 5.7128 -7.2384 -0.1012 16 6 6.4925 -8.3768 -0.0995 17 6 7.8684 -8.2759 0.0068 18 6 8.4702 -7.0349 0.1110 19 7 9.9427 -6.9353 0.2237 20 8 10.5170 -5.7544 0.3235 21 8 10.6785 -8.0276 0.2243 22 6 7.7004 -5.8894 0.1104 23 7 6.0579 -3.5621 0.0032 24 7 5.3753 -2.4752 0.0027 25 1 -0.4851 0.8401 -0.0004 26 1 3.8399 -0.4311 0.0015 27 1 2.2723 -3.7038 0.0020 28 1 3.5967 -5.8197 -0.0076 29 1 4.6386 -7.3185 -0.1791 30 1 6.0279 -9.3484 -0.1804 31 1 8.4747 -9.1697 0.0081 32 1 8.1713 -4.9209 0.1923 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182515.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:22 Heat of formation + Delta-G solvation = 103.951102 kcal Electronic energy + Delta-G solvation = -20479.570791 eV Core-core repulsion = 17023.890670 eV Total energy + Delta-G solvation = -3455.680121 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.72037 -40.91230 -39.32287 -37.96181 -35.61100 -34.84468 -34.32861 -32.89075 -32.64677 -30.49455 -27.86501 -26.79654 -25.45611 -24.28896 -23.26975 -22.48872 -20.71251 -19.68043 -19.17719 -18.86632 -17.90546 -17.42710 -17.11548 -16.78083 -16.62285 -15.96477 -15.86418 -15.24000 -15.00526 -14.86370 -14.39092 -14.25077 -13.87081 -13.54524 -13.06714 -12.87842 -12.71317 -12.58004 -12.46990 -12.29211 -12.11653 -11.93082 -11.92753 -11.35870 -11.07023 -10.52479 -10.35923 -10.22709 -9.20437 -8.86141 -5.77598 -1.83684 -0.42433 0.06722 0.13542 0.32303 0.70266 1.24750 1.27303 1.31025 1.97479 2.27995 2.52730 2.64789 3.18841 3.19488 3.50443 3.58420 3.82150 3.90811 3.99848 4.06986 4.22172 4.28088 4.41304 4.65217 4.73645 4.80027 4.87233 4.99875 5.09275 5.19868 5.41438 5.47727 5.51816 5.59668 5.74768 6.11218 6.97364 7.11974 8.20008 8.27194 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.033980 B = 0.003217 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.813515 B = 8702.596218 C = 9513.594344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.025 3.975 3 Si 0.941 3.059 4 H -0.256 1.256 5 H -0.256 1.256 6 H -0.253 1.253 7 C -0.362 4.362 8 H 0.109 0.891 9 N -0.499 5.499 10 C 0.248 3.752 11 C -0.200 4.200 12 C -0.048 4.048 13 C -0.055 4.055 14 C -0.003 4.003 15 C -0.045 4.045 16 C -0.088 4.088 17 C -0.055 4.055 18 C -0.020 4.020 19 N -0.012 5.012 20 O -0.243 6.243 21 O -0.157 6.157 22 C -0.058 4.058 23 N -0.206 5.206 24 N -0.375 5.375 25 H 0.301 0.699 26 H 0.388 0.612 27 H 0.144 0.856 28 H 0.185 0.815 29 H 0.182 0.818 30 H 0.203 0.797 31 H 0.176 0.824 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.356 -14.945 -0.546 15.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.190 4.190 3 Si 0.761 3.239 4 H -0.180 1.180 5 H -0.180 1.180 6 H -0.178 1.178 7 C -0.494 4.494 8 H 0.126 0.874 9 N -0.102 5.102 10 C 0.003 3.997 11 C -0.233 4.233 12 C -0.074 4.074 13 C -0.205 4.205 14 C -0.006 4.006 15 C -0.064 4.064 16 C -0.106 4.106 17 C -0.075 4.075 18 C -0.107 4.107 19 N 0.462 4.538 20 O -0.421 6.421 21 O -0.360 6.360 22 C -0.079 4.079 23 N -0.052 5.052 24 N -0.237 5.237 25 H 0.114 0.886 26 H 0.223 0.777 27 H 0.161 0.839 28 H 0.202 0.798 29 H 0.199 0.801 30 H 0.220 0.780 31 H 0.193 0.807 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.432 -13.596 -0.582 14.034 hybrid contribution -0.365 1.070 0.097 1.135 sum 3.067 -12.526 -0.485 12.905 Atomic orbital electron populations 1.68626 1.08819 1.31792 1.37878 1.27322 0.95768 1.01529 0.94378 0.85681 0.79708 0.78005 0.80465 1.17988 1.18026 1.17767 1.20332 0.80354 0.95760 1.52922 0.87371 1.39594 1.05589 1.04613 1.60392 1.19923 0.90877 0.87734 1.01168 1.21640 1.01579 0.91241 1.08840 1.22176 0.92209 0.99780 0.93232 1.20547 0.92536 0.92428 1.15006 1.18236 0.89908 0.92573 0.99881 1.22175 1.03416 0.89575 0.91278 1.21655 0.90309 1.01137 0.97525 1.21588 0.97206 0.94922 0.93810 1.20546 0.75023 0.98079 1.17030 1.50852 1.05871 1.02140 0.94934 1.96323 1.76971 1.09424 1.59393 1.96187 1.64186 1.21575 1.54092 1.21037 0.94003 0.97863 0.95006 1.72479 1.31675 0.95533 1.05525 1.72660 1.04377 1.20061 1.26561 0.88621 0.77710 0.83872 0.79809 0.80103 0.78036 0.80667 0.84984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -40.04 13.88 23.25 0.32 -39.72 16 2 C 0.03 1.15 5.70 87.30 0.50 1.65 16 3 Si 0.94 34.53 27.86 68.60 1.91 36.45 16 4 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 5 H -0.26 -8.94 7.11 99.48 0.71 -8.24 16 6 H -0.25 -9.14 6.62 99.48 0.66 -8.48 16 7 C -0.36 -17.04 10.30 86.79 0.89 -16.15 16 8 H 0.11 5.30 5.84 -2.91 -0.02 5.28 16 9 N -0.50 -22.33 5.17 -184.91 -0.96 -23.29 16 10 C 0.25 10.86 7.70 133.16 1.02 11.88 16 11 C -0.20 -7.43 9.39 22.64 0.21 -7.22 16 12 C -0.05 -1.39 9.53 22.69 0.22 -1.18 16 13 C -0.05 -1.82 6.80 42.07 0.29 -1.53 16 14 C 0.00 -0.07 5.87 -20.05 -0.12 -0.19 16 15 C -0.04 -0.63 9.43 22.49 0.21 -0.42 16 16 C -0.09 -0.84 10.03 22.24 0.22 -0.62 16 17 C -0.06 -0.86 9.57 22.32 0.21 -0.65 16 18 C -0.02 -0.52 6.88 36.34 0.25 -0.27 16 19 N -0.01 -0.37 4.98 -46.55 -0.23 -0.60 16 20 O -0.24 -9.13 19.15 3.52 0.07 -9.07 16 21 O -0.16 -4.69 19.14 3.51 0.07 -4.62 16 22 C -0.06 -1.68 9.11 22.49 0.20 -1.48 16 23 N -0.21 -8.57 10.63 -48.32 -0.51 -9.08 16 24 N -0.37 -16.99 11.53 -55.02 -0.63 -17.63 16 25 H 0.30 12.90 8.26 -92.70 -0.77 12.14 16 26 H 0.39 16.61 6.06 -92.71 -0.56 16.05 16 27 H 0.14 5.20 6.03 -2.91 -0.02 5.18 16 28 H 0.18 3.17 6.32 -2.91 -0.02 3.15 16 29 H 0.18 1.28 6.26 -2.91 -0.02 1.26 16 30 H 0.20 -0.04 8.06 -2.91 -0.02 -0.06 16 31 H 0.18 1.94 7.57 -2.91 -0.02 1.92 16 32 H 0.13 4.63 7.08 -2.91 -0.02 4.61 16 Total: -1.00 -64.16 294.97 4.76 -59.40 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.61 Total: 24.33 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: 4.12 Total: -16.17 kcal Atomic # 7 Polarization: -88.30 SS G_CDS: -2.01 Total: -90.32 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.13 Total: -13.69 kcal Atomic # 14 Polarization: 34.53 SS G_CDS: 1.91 Total: 36.45 kcal Total: -64.16 4.76 -59.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182515.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.352 kcal (2) G-P(sol) polarization free energy of solvation -64.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds