Wall clock time and date at job start Tue Mar 31 2020 06:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52995 * 109.47394 * 2 1 4 4 C 1.53003 * 109.47138 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47061 * 180.02562 * 4 3 2 6 6 C 1.36940 * 119.99923 * 272.64471 * 5 4 3 7 7 H 1.08004 * 119.99588 * 5.55675 * 6 5 4 8 8 C 1.38808 * 120.00179 * 185.55845 * 6 5 4 9 9 N 1.31624 * 119.99642 * 29.40705 * 8 6 5 10 10 Si 1.86797 * 120.00213 * 209.40909 * 8 6 5 11 11 H 1.48502 * 109.46861 * 89.99952 * 10 8 6 12 12 H 1.48501 * 109.47136 * 209.99813 * 10 8 6 13 13 H 1.48497 * 109.46779 * 330.00155 * 10 8 6 14 14 C 1.46496 * 120.00276 * 92.64362 * 5 4 3 15 15 H 1.08998 * 109.47361 * 210.00289 * 14 5 4 16 16 F 1.39901 * 109.46809 * 329.99869 * 14 5 4 17 17 C 1.50699 * 109.47373 * 89.99747 * 14 5 4 18 18 C 1.38714 * 120.77831 * 314.72730 * 17 14 5 19 19 C 1.38150 * 119.18995 * 179.71002 * 18 17 14 20 20 N 1.31910 * 120.77932 * 0.56680 * 19 18 17 21 21 C 1.31944 * 121.70995 * 359.73102 * 20 19 18 22 22 Cl 1.73600 * 119.63440 * 179.97438 * 21 20 19 23 23 C 1.38401 * 120.72891 * 359.96801 * 21 20 19 24 24 H 1.08998 * 109.47247 * 60.00514 * 1 2 3 25 25 H 1.09004 * 109.47539 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47503 * 300.00369 * 1 2 3 27 27 H 1.09001 * 109.47184 * 239.99210 * 2 1 3 28 28 H 1.08997 * 109.47291 * 120.00272 * 2 1 3 29 29 H 1.08990 * 109.47127 * 60.00002 * 3 2 1 30 30 H 1.09001 * 109.47007 * 299.99861 * 3 2 1 31 31 H 1.09001 * 109.47002 * 299.99796 * 4 3 2 32 32 H 1.09000 * 109.47287 * 60.00033 * 4 3 2 33 33 H 0.97002 * 119.99659 * 180.02562 * 9 8 6 34 34 H 1.07990 * 120.40642 * 359.97438 * 18 17 14 35 35 H 1.07998 * 119.60825 * 180.31661 * 19 18 17 36 36 H 1.08004 * 120.42062 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2345 3.4881 -1.1844 7 1 3.9295 3.0275 -2.1125 8 6 4.8052 4.7534 -1.1921 9 7 5.6717 5.0902 -0.2604 10 14 4.3433 5.9782 -2.5248 11 1 3.1754 6.7791 -2.0777 12 1 5.4923 6.8818 -2.7863 13 1 3.9950 5.2472 -3.7696 14 6 4.3583 3.4940 1.2676 15 1 4.1861 4.5650 1.1618 16 9 3.5279 2.9852 2.2720 17 6 5.7992 3.2507 1.6359 18 6 6.3534 1.9831 1.5348 19 6 7.6795 1.7985 1.8754 20 7 8.4134 2.8076 2.3031 21 6 7.9186 4.0254 2.4177 22 17 8.9330 5.3140 2.9871 23 6 6.5999 4.2868 2.0889 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5140 -0.8899 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9562 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9284 0.8891 32 1 3.9330 0.9287 -0.8908 33 1 6.0702 5.9746 -0.2656 34 1 5.7568 1.1517 1.1899 35 1 8.1193 0.8154 1.7944 36 1 6.2002 5.2856 2.1842 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165160033.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:56 Heat of formation + Delta-G solvation = -4.890054 kcal Electronic energy + Delta-G solvation = -21049.270209 eV Core-core repulsion = 17702.350665 eV Total energy + Delta-G solvation = -3346.919545 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.094 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -46.78152 -39.37853 -36.46818 -35.97476 -34.36235 -31.97043 -31.49355 -30.19020 -28.18524 -25.81738 -24.21745 -22.85883 -22.01869 -20.81949 -20.20719 -17.65246 -16.57637 -15.95408 -15.41739 -15.24284 -14.86326 -14.35468 -14.25880 -13.99354 -13.62808 -13.47232 -13.24695 -13.05588 -12.46661 -12.26272 -11.69417 -11.55626 -11.34609 -11.25049 -11.13497 -10.88037 -10.79087 -10.70675 -10.59752 -10.41211 -10.31388 -9.94563 -9.85210 -9.06550 -8.93053 -8.59099 -8.22449 -7.40117 -6.11573 -3.39749 1.74471 1.99806 2.44070 3.26282 3.36353 3.37080 4.23413 4.42109 4.87898 5.03451 5.18577 5.27172 5.31727 5.39452 5.51048 5.70364 5.81567 5.89175 5.93450 6.07693 6.09707 6.21119 6.23450 6.28437 6.35017 6.42496 6.49346 6.58601 6.75963 6.81720 7.00721 7.15970 7.30065 7.59738 7.91978 8.39239 8.80083 9.46666 9.91213 10.93084 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.014487 B = 0.006564 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.272687 B = 4264.989001 C = 5640.397551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.136 4.136 4 C 0.144 3.856 5 N -0.602 5.602 6 C -0.256 4.256 7 H 0.086 0.914 8 C 0.004 3.996 9 N -0.901 5.901 10 Si 0.901 3.099 11 H -0.286 1.286 12 H -0.292 1.292 13 H -0.280 1.280 14 C 0.391 3.609 15 H 0.115 0.885 16 F -0.231 7.231 17 C -0.001 4.001 18 C -0.155 4.155 19 C 0.094 3.906 20 N -0.495 5.495 21 C 0.154 3.846 22 Cl -0.061 7.061 23 C -0.070 4.070 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.043 0.957 32 H 0.049 0.951 33 H 0.262 0.738 34 H 0.129 0.871 35 H 0.150 0.850 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.521 -5.069 3.995 6.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.176 4.176 4 C 0.019 3.981 5 N -0.325 5.325 6 C -0.384 4.384 7 H 0.104 0.896 8 C -0.194 4.194 9 N -0.545 5.545 10 Si 0.730 3.270 11 H -0.212 1.212 12 H -0.218 1.218 13 H -0.205 1.205 14 C 0.267 3.733 15 H 0.133 0.867 16 F -0.213 7.213 17 C -0.013 4.013 18 C -0.175 4.175 19 C -0.063 4.063 20 N -0.207 5.207 21 C -0.009 4.009 22 Cl -0.033 7.033 23 C -0.092 4.092 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.147 0.853 35 H 0.168 0.832 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.507 -4.947 4.265 6.703 hybrid contribution -0.753 0.952 -1.108 1.643 sum -2.260 -3.995 3.157 5.571 Atomic orbital electron populations 1.21754 0.96585 1.00675 1.01645 1.21486 0.95252 0.98083 1.01216 1.22168 0.98343 0.94870 1.02174 1.20876 0.92297 0.85673 0.99285 1.44784 1.75105 1.10421 1.02200 1.19197 1.35917 0.97605 0.85636 0.89603 1.24774 0.97024 0.98931 0.98697 1.70129 1.26271 1.20980 1.37132 0.86289 0.78033 0.81460 0.81208 1.21249 1.21810 1.20481 1.19741 0.81416 0.96708 0.75474 0.86734 1.92767 1.74682 1.90264 1.63552 1.21095 0.98866 0.91626 0.89708 1.21981 0.96394 0.98275 1.00883 1.22251 0.90819 0.96388 0.96871 1.66739 1.39213 0.99191 1.15574 1.21411 0.89323 0.88865 1.01333 1.98336 1.70411 1.47016 1.87570 1.21392 0.91316 1.00438 0.96085 0.92987 0.93502 0.92986 0.92577 0.92590 0.92239 0.92121 0.93845 0.93271 0.92754 0.85295 0.83246 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 37.15 0.37 -1.41 16 2 C -0.12 -1.64 5.93 -26.74 -0.16 -1.80 16 3 C -0.14 -2.27 5.50 -26.73 -0.15 -2.42 16 4 C 0.14 2.68 4.39 -4.04 -0.02 2.67 16 5 N -0.60 -13.29 2.26 -173.76 -0.39 -13.68 16 6 C -0.26 -6.23 9.68 -15.06 -0.15 -6.37 16 7 H 0.09 2.09 7.98 -52.48 -0.42 1.67 16 8 C 0.00 0.09 4.81 -17.43 -0.08 0.00 16 9 N -0.90 -22.39 7.75 55.49 0.43 -21.96 16 10 Si 0.90 20.11 29.64 -169.99 -5.04 15.07 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 14 C 0.39 8.53 3.37 -5.20 -0.02 8.51 16 15 H 0.12 2.73 6.11 -51.93 -0.32 2.41 16 16 F -0.23 -4.81 15.76 2.25 0.04 -4.78 16 17 C 0.00 -0.02 4.33 -104.33 -0.45 -0.47 16 18 C -0.15 -3.00 9.41 -39.44 -0.37 -3.38 16 19 C 0.09 1.72 11.18 -17.55 -0.20 1.52 16 20 N -0.49 -9.90 10.34 -10.36 -0.11 -10.01 16 21 C 0.15 3.09 7.27 -17.44 -0.13 2.96 16 22 Cl -0.06 -1.08 29.11 -51.86 -1.51 -2.59 16 23 C -0.07 -1.45 7.66 -39.40 -0.30 -1.75 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 1.06 7.58 -51.93 -0.39 0.67 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.04 0.77 6.27 -51.93 -0.33 0.44 16 32 H 0.05 0.91 8.06 -51.93 -0.42 0.49 16 33 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 34 H 0.13 2.34 5.60 -52.49 -0.29 2.04 16 35 H 0.15 2.19 8.06 -52.49 -0.42 1.77 16 36 H 0.14 2.76 7.78 -52.48 -0.41 2.35 16 LS Contribution 314.25 15.07 4.74 4.74 Total: -1.00 -25.51 314.25 -8.17 -33.68 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -4.67 Total: 1.48 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -1.65 Total: -1.94 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.07 Total: -45.66 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.04 Total: -4.78 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.04 Total: 15.07 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.51 Total: -2.59 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -25.51 -8.17 -33.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165160033.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.786 kcal (2) G-P(sol) polarization free energy of solvation -25.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds