Wall clock time and date at job start Tue Mar 31 2020 06:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52995 * 109.47394 * 2 1 4 4 C 1.53003 * 109.47138 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47061 * 180.02562 * 4 3 2 6 6 C 1.36940 * 119.99923 * 272.64471 * 5 4 3 7 7 H 1.08004 * 119.99588 * 5.55675 * 6 5 4 8 8 C 1.38808 * 120.00179 * 185.55845 * 6 5 4 9 9 N 1.31624 * 119.99642 * 29.40705 * 8 6 5 10 10 Si 1.86797 * 120.00213 * 209.40909 * 8 6 5 11 11 H 1.48502 * 109.46861 * 89.99952 * 10 8 6 12 12 H 1.48501 * 109.47136 * 209.99813 * 10 8 6 13 13 H 1.48497 * 109.46779 * 330.00155 * 10 8 6 14 14 C 1.46496 * 120.00276 * 92.64362 * 5 4 3 15 15 H 1.08998 * 109.47361 * 210.00289 * 14 5 4 16 16 F 1.39901 * 109.46809 * 329.99869 * 14 5 4 17 17 C 1.50699 * 109.47373 * 89.99747 * 14 5 4 18 18 C 1.38714 * 120.77831 * 314.72730 * 17 14 5 19 19 C 1.38150 * 119.18995 * 179.71002 * 18 17 14 20 20 N 1.31910 * 120.77932 * 0.56680 * 19 18 17 21 21 C 1.31944 * 121.70995 * 359.73102 * 20 19 18 22 22 Cl 1.73600 * 119.63440 * 179.97438 * 21 20 19 23 23 C 1.38401 * 120.72891 * 359.96801 * 21 20 19 24 24 H 1.08998 * 109.47247 * 60.00514 * 1 2 3 25 25 H 1.09004 * 109.47539 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47503 * 300.00369 * 1 2 3 27 27 H 1.09001 * 109.47184 * 239.99210 * 2 1 3 28 28 H 1.08997 * 109.47291 * 120.00272 * 2 1 3 29 29 H 1.08990 * 109.47127 * 60.00002 * 3 2 1 30 30 H 1.09001 * 109.47007 * 299.99861 * 3 2 1 31 31 H 1.09001 * 109.47002 * 299.99796 * 4 3 2 32 32 H 1.09000 * 109.47287 * 60.00033 * 4 3 2 33 33 H 0.97002 * 119.99659 * 180.02562 * 9 8 6 34 34 H 1.07990 * 120.40642 * 359.97438 * 18 17 14 35 35 H 1.07998 * 119.60825 * 180.31661 * 19 18 17 36 36 H 1.08004 * 120.42062 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2345 3.4881 -1.1844 7 1 3.9295 3.0275 -2.1125 8 6 4.8052 4.7534 -1.1921 9 7 5.6717 5.0902 -0.2604 10 14 4.3433 5.9782 -2.5248 11 1 3.1754 6.7791 -2.0777 12 1 5.4923 6.8818 -2.7863 13 1 3.9950 5.2472 -3.7696 14 6 4.3583 3.4940 1.2676 15 1 4.1861 4.5650 1.1618 16 9 3.5279 2.9852 2.2720 17 6 5.7992 3.2507 1.6359 18 6 6.3534 1.9831 1.5348 19 6 7.6795 1.7985 1.8754 20 7 8.4134 2.8076 2.3031 21 6 7.9186 4.0254 2.4177 22 17 8.9330 5.3140 2.9871 23 6 6.5999 4.2868 2.0889 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5140 -0.8899 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9562 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9284 0.8891 32 1 3.9330 0.9287 -0.8908 33 1 6.0702 5.9746 -0.2656 34 1 5.7568 1.1517 1.1899 35 1 8.1193 0.8154 1.7944 36 1 6.2002 5.2856 2.1842 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165160033.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:55 Heat of formation + Delta-G solvation = -15.819667 kcal Electronic energy + Delta-G solvation = -21049.744153 eV Core-core repulsion = 17702.350665 eV Total energy + Delta-G solvation = -3347.393488 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.094 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.48155 -40.90780 -38.04050 -37.44365 -35.73721 -33.60184 -33.10116 -31.70919 -29.59301 -27.54460 -25.73861 -24.38638 -23.48797 -22.21463 -21.67489 -19.38550 -18.14734 -17.63898 -17.01987 -16.79842 -16.25533 -16.05099 -15.82183 -15.59768 -15.16142 -14.77955 -14.70356 -14.58368 -13.89026 -13.74370 -13.20463 -13.09674 -12.96343 -12.74529 -12.59416 -12.50686 -12.25302 -12.18469 -12.04768 -11.89874 -11.79987 -11.51449 -11.26915 -10.68017 -10.51176 -10.34629 -9.73153 -9.15412 -7.97055 -5.25900 0.20576 0.44701 0.94562 1.46273 1.53293 1.57475 2.44725 2.86610 3.10502 3.29375 3.64381 3.78589 4.14017 4.18081 4.20864 4.31514 4.36825 4.45463 4.54772 4.58740 4.78898 4.85747 4.92597 5.00883 5.05372 5.07654 5.17237 5.21275 5.42106 5.51321 5.58683 5.63840 5.69615 5.77563 6.12824 6.87938 6.95784 7.66398 8.10477 9.04200 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.014487 B = 0.006564 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.272687 B = 4264.989001 C = 5640.397551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.126 4.126 4 C 0.143 3.857 5 N -0.612 5.612 6 C -0.262 4.262 7 H 0.083 0.917 8 C -0.033 4.033 9 N -0.909 5.909 10 Si 0.949 3.051 11 H -0.290 1.290 12 H -0.301 1.301 13 H -0.277 1.277 14 C 0.397 3.603 15 H 0.089 0.911 16 F -0.228 7.228 17 C -0.017 4.017 18 C -0.160 4.160 19 C 0.100 3.900 20 N -0.506 5.506 21 C 0.145 3.855 22 Cl -0.044 7.044 23 C -0.081 4.081 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.256 0.744 34 H 0.142 0.858 35 H 0.190 0.810 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.514 -6.576 3.966 8.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.166 4.166 4 C 0.018 3.982 5 N -0.336 5.336 6 C -0.390 4.390 7 H 0.100 0.900 8 C -0.230 4.230 9 N -0.554 5.554 10 Si 0.779 3.221 11 H -0.217 1.217 12 H -0.229 1.229 13 H -0.202 1.202 14 C 0.272 3.728 15 H 0.107 0.893 16 F -0.209 7.209 17 C -0.028 4.028 18 C -0.180 4.180 19 C -0.057 4.057 20 N -0.218 5.218 21 C -0.018 4.018 22 Cl -0.016 7.016 23 C -0.103 4.103 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.159 0.841 35 H 0.207 0.793 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.513 -6.468 4.244 7.883 hybrid contribution -0.755 1.400 -1.065 1.914 sum -2.268 -5.068 3.179 6.398 Atomic orbital electron populations 1.21737 0.95346 1.01963 1.01452 1.21440 0.96322 0.95612 1.02080 1.22030 0.96947 0.97001 1.00633 1.21036 0.93325 0.84028 0.99810 1.44854 1.75504 1.11653 1.01549 1.19310 1.35367 0.98035 0.86330 0.89962 1.25260 0.97442 0.99942 1.00329 1.70246 1.26654 1.20582 1.37940 0.85537 0.76980 0.79756 0.79811 1.21682 1.22867 1.20179 1.19424 0.82157 0.95450 0.75721 0.89318 1.92765 1.74730 1.90111 1.63317 1.21074 0.98341 0.92743 0.90680 1.22175 0.97175 0.97885 1.00799 1.22881 0.90296 0.97552 0.94946 1.66875 1.39536 0.99393 1.16017 1.21563 0.89468 0.89538 1.01233 1.98333 1.69729 1.46221 1.87282 1.21369 0.91842 1.00228 0.96848 0.93221 0.91466 0.93219 0.91719 0.91680 0.93712 0.93676 0.92801 0.93032 0.93435 0.84077 0.79282 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.91 71.98 0.71 -2.49 16 2 C -0.12 -2.88 5.93 30.59 0.18 -2.70 16 3 C -0.13 -4.11 5.50 30.59 0.17 -3.94 16 4 C 0.14 5.14 4.39 86.38 0.38 5.52 16 5 N -0.61 -26.87 2.26 -703.67 -1.59 -28.46 16 6 C -0.26 -12.73 9.68 84.03 0.81 -11.92 16 7 H 0.08 3.98 7.98 -2.91 -0.02 3.96 16 8 C -0.03 -1.65 4.81 84.86 0.41 -1.24 16 9 N -0.91 -45.66 7.75 21.65 0.17 -45.49 16 10 Si 0.95 41.66 29.64 68.60 2.03 43.69 16 11 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 13 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 14 C 0.40 17.42 3.37 85.63 0.29 17.70 16 15 H 0.09 4.35 6.11 -2.39 -0.01 4.33 16 16 F -0.23 -9.47 15.76 44.97 0.71 -8.76 16 17 C -0.02 -0.70 4.33 -19.67 -0.09 -0.78 16 18 C -0.16 -5.96 9.41 22.36 0.21 -5.75 16 19 C 0.10 3.42 11.18 84.66 0.95 4.37 16 20 N -0.51 -19.36 10.34 -186.69 -1.93 -21.29 16 21 C 0.14 5.69 7.27 84.71 0.62 6.31 16 22 Cl -0.04 -1.51 29.11 -2.72 -0.08 -1.59 16 23 C -0.08 -3.34 7.66 22.39 0.17 -3.17 16 24 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.04 1.57 7.58 -2.39 -0.02 1.55 16 30 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.05 1.82 6.27 -2.39 -0.01 1.80 16 32 H 0.05 1.83 8.06 -2.39 -0.02 1.81 16 33 H 0.26 12.82 8.31 -92.71 -0.77 12.05 16 34 H 0.14 4.82 5.60 -2.92 -0.02 4.81 16 35 H 0.19 4.81 8.06 -2.91 -0.02 4.79 16 36 H 0.13 5.42 7.78 -2.91 -0.02 5.40 16 Total: -1.00 -53.04 314.25 5.21 -47.83 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 1.08 Total: 12.15 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: 4.81 Total: 1.91 kcal Atomic # 7 Polarization: -91.89 SS G_CDS: -3.35 Total: -95.24 kcal Atomic # 9 Polarization: -9.47 SS G_CDS: 0.71 Total: -8.76 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.08 Total: -1.59 kcal Total: -53.04 5.21 -47.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165160033.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.011 kcal (2) G-P(sol) polarization free energy of solvation -53.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds