Wall clock time and date at job start Tue Mar 31 2020 06:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46896 * 110.99840 * 2 1 4 4 C 1.53000 * 109.47110 * 287.12769 * 3 2 1 5 5 H 1.09003 * 109.47515 * 305.38086 * 4 3 2 6 6 O 1.42907 * 109.46880 * 65.37709 * 4 3 2 7 7 C 1.52999 * 109.47398 * 185.37581 * 4 3 2 8 8 O 1.42903 * 109.47451 * 175.00233 * 7 4 3 9 9 C 1.38408 * 110.99912 * 123.95086 * 2 1 3 10 10 N 1.32746 * 119.43737 * 297.35802 * 9 2 1 11 11 C 1.31470 * 121.74094 * 179.97438 * 10 9 2 12 12 C 1.40792 * 120.38893 * 0.02562 * 11 10 9 13 13 C 1.41199 * 120.56510 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99960 * 28.25131 * 13 12 11 15 15 C 1.39871 * 119.99905 * 208.25315 * 13 12 11 16 16 N 1.30909 * 119.99760 * 10.74978 * 15 13 12 17 17 Si 1.86801 * 119.99826 * 190.74732 * 15 13 12 18 18 H 1.48494 * 109.46815 * 94.98989 * 17 15 13 19 19 H 1.48504 * 109.46678 * 214.98683 * 17 15 13 20 20 H 1.48492 * 109.46936 * 334.98657 * 17 15 13 21 21 C 1.41284 * 118.87051 * 0.02562 * 12 11 10 22 22 C 1.36672 * 118.40090 * 359.97438 * 21 12 11 23 23 Cl 1.73600 * 120.26373 * 180.27825 * 22 21 12 24 24 H 1.08994 * 109.46926 * 303.34101 * 1 2 3 25 25 H 1.08994 * 109.46754 * 63.34242 * 1 2 3 26 26 H 1.09002 * 109.46715 * 183.33744 * 1 2 3 27 27 H 1.08998 * 109.47681 * 47.12968 * 3 2 1 28 28 H 1.09000 * 109.47222 * 167.13286 * 3 2 1 29 29 H 0.96699 * 113.99460 * 60.00620 * 6 4 3 30 30 H 1.08994 * 109.47467 * 295.00418 * 7 4 3 31 31 H 1.09004 * 109.46787 * 55.00345 * 7 4 3 32 32 H 0.96693 * 114.00230 * 180.02562 * 8 7 4 33 33 H 1.08001 * 119.80646 * 179.97438 * 11 10 9 34 34 H 0.96995 * 119.99486 * 180.02562 * 16 15 13 35 35 H 1.08005 * 120.80111 * 179.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7816 1.9998 -1.3785 5 1 2.2228 1.3593 -2.1423 6 8 0.3811 2.1405 -1.6258 7 6 2.4477 3.3765 -1.4204 8 8 2.3490 3.9135 -2.7410 9 6 1.9650 -0.7216 1.0719 10 7 1.7029 -0.3164 2.3085 11 6 2.1505 -0.9675 3.3592 12 6 2.9314 -2.1280 3.1985 13 6 3.4136 -2.8305 4.3244 14 1 2.8664 -2.8000 5.2551 15 6 4.6000 -3.5659 4.2345 16 7 5.3715 -3.4377 3.1847 17 14 5.0835 -4.7308 5.6124 18 1 4.6236 -6.1040 5.2838 19 1 6.5604 -4.7274 5.7679 20 1 4.4511 -4.2870 6.8805 21 6 3.2242 -2.5777 1.8916 22 6 2.7344 -1.8642 0.8337 23 17 3.0587 -2.3773 -0.7928 24 1 -0.3633 0.5648 0.8585 25 1 -0.3632 0.4611 -0.9184 26 1 -0.3633 -1.0260 0.0598 27 1 1.4730 1.9612 0.7531 28 1 3.0610 1.3516 0.2288 29 1 -0.0774 2.6991 -0.9833 30 1 1.9474 4.0437 -0.7186 31 1 3.4979 3.2805 -1.1448 32 1 2.7517 4.7868 -2.8416 33 1 1.9186 -0.6097 4.3515 34 1 6.1940 -3.9479 3.1222 35 1 3.8207 -3.4638 1.7322 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165533966.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:29 Heat of formation + Delta-G solvation = -73.047925 kcal Electronic energy + Delta-G solvation = -20484.883676 eV Core-core repulsion = 17122.635795 eV Total energy + Delta-G solvation = -3362.247881 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.32576 -38.12115 -36.29983 -35.39561 -35.20576 -33.78175 -30.66776 -30.44097 -29.40367 -26.25148 -25.70252 -23.50340 -22.01021 -21.33562 -20.50572 -17.63490 -17.39788 -16.57414 -16.21639 -16.05835 -15.68971 -15.04470 -14.28531 -14.27408 -13.88936 -13.59225 -13.12434 -12.91371 -12.68391 -12.35710 -12.08379 -11.92066 -11.56398 -11.47138 -11.32353 -11.08741 -10.92983 -10.72620 -10.67227 -10.35423 -10.17816 -9.87778 -9.69729 -9.51005 -8.56507 -8.22100 -7.81415 -7.58577 -7.00189 -4.70609 2.29556 2.68706 2.93756 2.96973 2.98672 3.31953 3.72472 3.89898 4.35877 4.53549 4.69168 5.06973 5.18081 5.30715 5.39145 5.44782 5.57620 5.78566 6.01716 6.08779 6.24108 6.35310 6.46957 6.55248 6.64055 6.80505 6.90635 7.00171 7.48471 7.51320 7.58662 7.67907 7.77888 8.02930 8.25896 8.46187 8.51593 9.27739 9.89656 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.027171 B = 0.004239 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.253853 B = 6603.092009 C = 6802.766915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.456 5.456 3 C 0.041 3.959 4 C 0.114 3.886 5 H 0.112 0.888 6 O -0.547 6.547 7 C 0.046 3.954 8 O -0.564 6.564 9 C 0.139 3.861 10 N -0.474 5.474 11 C -0.010 4.010 12 C 0.074 3.926 13 C -0.440 4.440 14 H 0.088 0.912 15 C 0.070 3.930 16 N -0.786 5.786 17 Si 0.919 3.081 18 H -0.266 1.266 19 H -0.275 1.275 20 H -0.259 1.259 21 C -0.129 4.129 22 C -0.011 4.011 23 Cl -0.096 7.096 24 H 0.024 0.976 25 H 0.089 0.911 26 H 0.053 0.947 27 H 0.043 0.957 28 H 0.076 0.924 29 H 0.366 0.634 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.375 0.625 33 H 0.132 0.868 34 H 0.287 0.713 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.267 7.246 -3.751 8.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.177 5.177 3 C -0.088 4.088 4 C 0.054 3.946 5 H 0.130 0.870 6 O -0.352 6.352 7 C -0.033 4.033 8 O -0.369 6.369 9 C -0.090 4.090 10 N -0.185 5.185 11 C -0.174 4.174 12 C 0.069 3.931 13 C -0.469 4.469 14 H 0.106 0.894 15 C -0.149 4.149 16 N -0.410 5.410 17 Si 0.743 3.257 18 H -0.191 1.191 19 H -0.200 1.200 20 H -0.183 1.183 21 C -0.155 4.155 22 C -0.041 4.041 23 Cl -0.068 7.068 24 H 0.042 0.958 25 H 0.107 0.893 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.095 0.905 29 H 0.212 0.788 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.221 0.779 33 H 0.149 0.851 34 H 0.098 0.902 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.515 6.670 -4.946 8.676 hybrid contribution 0.975 -0.042 1.834 2.077 sum -1.539 6.628 -3.112 7.483 Atomic orbital electron populations 1.22607 0.86837 1.01351 1.01318 1.59508 1.08156 1.11488 1.38592 1.22571 1.01074 0.90226 0.94908 1.22004 0.81392 0.93178 0.98016 0.87016 1.86631 1.20211 1.72292 1.56030 1.22921 1.00172 0.96027 0.84195 1.86560 1.82648 1.37781 1.29902 1.18586 1.06315 0.97015 0.87050 1.67175 1.20047 1.32164 0.99077 1.22428 1.04991 0.94812 0.95197 1.18493 0.90758 0.90993 0.92885 1.19582 1.05494 1.24077 0.97778 0.89430 1.26035 0.95733 0.95907 0.97234 1.69779 1.10370 1.33127 1.27734 0.86100 0.78387 0.80279 0.80936 1.19083 1.19963 1.18300 1.21419 1.02649 1.01071 0.90398 1.21171 1.01163 0.96874 0.84888 1.98263 1.94528 1.90483 1.23478 0.95759 0.89295 0.92795 0.93923 0.90548 0.78760 0.93559 0.92672 0.77929 0.85075 0.90187 0.84186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 8.89 60.07 0.53 1.00 16 2 N -0.46 -8.76 4.05 -180.94 -0.73 -9.49 16 3 C 0.04 0.67 4.52 -3.83 -0.02 0.65 16 4 C 0.11 1.62 3.46 -26.73 -0.09 1.53 16 5 H 0.11 1.81 8.14 -51.93 -0.42 1.39 16 6 O -0.55 -7.69 10.28 -40.07 -0.41 -8.10 16 7 C 0.05 0.52 6.68 37.16 0.25 0.77 16 8 O -0.56 -6.69 13.62 -40.07 -0.55 -7.24 16 9 C 0.14 3.10 5.19 -155.05 -0.80 2.30 16 10 N -0.47 -10.89 9.78 -11.75 -0.11 -11.01 16 11 C -0.01 -0.24 10.97 -16.74 -0.18 -0.42 16 12 C 0.07 1.83 5.56 -106.65 -0.59 1.23 16 13 C -0.44 -10.59 9.07 -37.85 -0.34 -10.94 16 14 H 0.09 1.99 7.87 -52.49 -0.41 1.57 16 15 C 0.07 1.62 5.27 -17.33 -0.09 1.52 16 16 N -0.79 -18.84 10.84 55.54 0.60 -18.24 16 17 Si 0.92 17.17 29.57 -169.99 -5.03 12.15 16 18 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 19 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 20 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 21 C -0.13 -3.19 8.49 -38.99 -0.33 -3.52 16 22 C -0.01 -0.25 6.32 -39.57 -0.25 -0.50 16 23 Cl -0.10 -1.99 28.43 -51.86 -1.47 -3.47 16 24 H 0.02 0.42 7.95 -51.93 -0.41 0.01 16 25 H 0.09 1.43 5.51 -51.93 -0.29 1.14 16 26 H 0.05 1.00 8.09 -51.93 -0.42 0.58 16 27 H 0.04 0.69 7.97 -51.93 -0.41 0.28 16 28 H 0.08 1.34 7.96 -51.93 -0.41 0.93 16 29 H 0.37 3.90 9.04 45.56 0.41 4.32 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.37 2.54 9.12 45.56 0.42 2.95 16 33 H 0.13 2.82 8.06 -52.49 -0.42 2.40 16 34 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 35 H 0.14 3.58 6.27 -52.48 -0.33 3.25 16 LS Contribution 312.89 15.07 4.72 4.72 Total: -1.00 -28.12 312.89 -7.60 -35.72 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -2.69 Total: 11.35 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -1.93 Total: -6.38 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: -0.24 Total: -38.74 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.96 Total: -15.34 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.15 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -1.47 Total: -3.47 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.12 -7.60 -35.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165533966.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.325 kcal (2) G-P(sol) polarization free energy of solvation -28.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds