Wall clock time and date at job start Tue Mar 31 2020 06:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46896 * 110.99840 * 2 1 4 4 C 1.53000 * 109.47110 * 287.12769 * 3 2 1 5 5 H 1.09003 * 109.47515 * 305.38086 * 4 3 2 6 6 O 1.42907 * 109.46880 * 65.37709 * 4 3 2 7 7 C 1.52999 * 109.47398 * 185.37581 * 4 3 2 8 8 O 1.42903 * 109.47451 * 175.00233 * 7 4 3 9 9 C 1.38408 * 110.99912 * 123.95086 * 2 1 3 10 10 N 1.32746 * 119.43737 * 297.35802 * 9 2 1 11 11 C 1.31470 * 121.74094 * 179.97438 * 10 9 2 12 12 C 1.40792 * 120.38893 * 0.02562 * 11 10 9 13 13 C 1.41199 * 120.56510 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99960 * 28.25131 * 13 12 11 15 15 C 1.39871 * 119.99905 * 208.25315 * 13 12 11 16 16 N 1.30909 * 119.99760 * 10.74978 * 15 13 12 17 17 Si 1.86801 * 119.99826 * 190.74732 * 15 13 12 18 18 H 1.48494 * 109.46815 * 94.98989 * 17 15 13 19 19 H 1.48504 * 109.46678 * 214.98683 * 17 15 13 20 20 H 1.48492 * 109.46936 * 334.98657 * 17 15 13 21 21 C 1.41284 * 118.87051 * 0.02562 * 12 11 10 22 22 C 1.36672 * 118.40090 * 359.97438 * 21 12 11 23 23 Cl 1.73600 * 120.26373 * 180.27825 * 22 21 12 24 24 H 1.08994 * 109.46926 * 303.34101 * 1 2 3 25 25 H 1.08994 * 109.46754 * 63.34242 * 1 2 3 26 26 H 1.09002 * 109.46715 * 183.33744 * 1 2 3 27 27 H 1.08998 * 109.47681 * 47.12968 * 3 2 1 28 28 H 1.09000 * 109.47222 * 167.13286 * 3 2 1 29 29 H 0.96699 * 113.99460 * 60.00620 * 6 4 3 30 30 H 1.08994 * 109.47467 * 295.00418 * 7 4 3 31 31 H 1.09004 * 109.46787 * 55.00345 * 7 4 3 32 32 H 0.96693 * 114.00230 * 180.02562 * 8 7 4 33 33 H 1.08001 * 119.80646 * 179.97438 * 11 10 9 34 34 H 0.96995 * 119.99486 * 180.02562 * 16 15 13 35 35 H 1.08005 * 120.80111 * 179.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7816 1.9998 -1.3785 5 1 2.2228 1.3593 -2.1423 6 8 0.3811 2.1405 -1.6258 7 6 2.4477 3.3765 -1.4204 8 8 2.3490 3.9135 -2.7410 9 6 1.9650 -0.7216 1.0719 10 7 1.7029 -0.3164 2.3085 11 6 2.1505 -0.9675 3.3592 12 6 2.9314 -2.1280 3.1985 13 6 3.4136 -2.8305 4.3244 14 1 2.8664 -2.8000 5.2551 15 6 4.6000 -3.5659 4.2345 16 7 5.3715 -3.4377 3.1847 17 14 5.0835 -4.7308 5.6124 18 1 4.6236 -6.1040 5.2838 19 1 6.5604 -4.7274 5.7679 20 1 4.4511 -4.2870 6.8805 21 6 3.2242 -2.5777 1.8916 22 6 2.7344 -1.8642 0.8337 23 17 3.0587 -2.3773 -0.7928 24 1 -0.3633 0.5648 0.8585 25 1 -0.3632 0.4611 -0.9184 26 1 -0.3633 -1.0260 0.0598 27 1 1.4730 1.9612 0.7531 28 1 3.0610 1.3516 0.2288 29 1 -0.0774 2.6991 -0.9833 30 1 1.9474 4.0437 -0.7186 31 1 3.4979 3.2805 -1.1448 32 1 2.7517 4.7868 -2.8416 33 1 1.9186 -0.6097 4.3515 34 1 6.1940 -3.9479 3.1222 35 1 3.8207 -3.4638 1.7322 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165533966.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:28 Heat of formation + Delta-G solvation = -94.185647 kcal Electronic energy + Delta-G solvation = -20485.800277 eV Core-core repulsion = 17122.635795 eV Total energy + Delta-G solvation = -3363.164482 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.95375 -39.39574 -37.52600 -37.14016 -36.49102 -35.44775 -32.44044 -31.80861 -31.01117 -27.81158 -27.07208 -25.07378 -23.69721 -22.69528 -22.07476 -19.42784 -18.35844 -17.97172 -17.58720 -17.37291 -17.14241 -16.72548 -15.95384 -15.64532 -15.28662 -14.84210 -14.56207 -14.29754 -14.00952 -13.85918 -13.70787 -13.53264 -13.21614 -12.95009 -12.82661 -12.61180 -12.49209 -12.38385 -11.95375 -11.79728 -11.62827 -11.26693 -11.03566 -10.82919 -10.28386 -10.04764 -9.40044 -9.35381 -8.73432 -6.53829 0.51440 0.84559 1.40813 1.47879 1.53185 1.55114 2.16592 2.58975 2.77776 3.38182 3.49000 3.57303 4.02851 4.08833 4.15666 4.29316 4.39240 4.52076 4.58225 4.65285 4.72554 4.76789 4.86865 5.01099 5.10044 5.14757 5.20852 5.24993 5.70530 5.81457 6.13037 6.23042 6.49823 6.66953 6.76121 6.83435 6.91227 7.45161 8.19188 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.027171 B = 0.004239 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.253853 B = 6603.092009 C = 6802.766915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.466 5.466 3 C 0.047 3.953 4 C 0.123 3.877 5 H 0.089 0.911 6 O -0.558 6.558 7 C 0.053 3.947 8 O -0.585 6.585 9 C 0.142 3.858 10 N -0.476 5.476 11 C -0.019 4.019 12 C 0.050 3.950 13 C -0.465 4.465 14 H 0.095 0.905 15 C 0.033 3.967 16 N -0.817 5.817 17 Si 0.991 3.009 18 H -0.263 1.263 19 H -0.269 1.269 20 H -0.252 1.252 21 C -0.145 4.145 22 C -0.024 4.024 23 Cl -0.078 7.078 24 H 0.025 0.975 25 H 0.107 0.893 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.382 0.618 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.397 0.603 33 H 0.147 0.853 34 H 0.294 0.706 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.441 8.061 -3.495 9.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.187 5.187 3 C -0.081 4.081 4 C 0.064 3.936 5 H 0.107 0.893 6 O -0.365 6.365 7 C -0.026 4.026 8 O -0.393 6.393 9 C -0.087 4.087 10 N -0.187 5.187 11 C -0.183 4.183 12 C 0.045 3.955 13 C -0.494 4.494 14 H 0.113 0.887 15 C -0.183 4.183 16 N -0.442 5.442 17 Si 0.811 3.189 18 H -0.188 1.188 19 H -0.194 1.194 20 H -0.176 1.176 21 C -0.172 4.172 22 C -0.054 4.054 23 Cl -0.050 7.050 24 H 0.043 0.957 25 H 0.125 0.875 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.231 0.769 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.247 0.753 33 H 0.164 0.836 34 H 0.105 0.895 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.699 7.526 -4.699 9.274 hybrid contribution 0.994 -0.223 1.634 1.926 sum -1.705 7.303 -3.065 8.101 Atomic orbital electron populations 1.22575 0.85690 1.00689 1.02278 1.59570 1.09113 1.13034 1.37029 1.22557 1.00064 0.88787 0.96717 1.21751 0.81872 0.94490 0.95525 0.89269 1.86579 1.20141 1.72965 1.56796 1.22770 1.00458 0.94681 0.84694 1.86489 1.83190 1.39626 1.29979 1.18902 1.05321 0.96814 0.87642 1.67257 1.20133 1.32076 0.99249 1.22694 1.04882 0.94621 0.96101 1.18782 0.91548 0.91811 0.93312 1.19882 1.06372 1.25143 0.97991 0.88666 1.26891 0.95138 0.96799 0.99520 1.69836 1.10943 1.33925 1.29501 0.85025 0.78137 0.77790 0.77901 1.18791 1.19368 1.17557 1.21365 1.03466 1.01188 0.91169 1.21341 1.01253 0.97216 0.85615 1.98255 1.94432 1.90349 1.21917 0.95654 0.87458 0.94182 0.93276 0.91936 0.76874 0.91333 0.92003 0.75321 0.83567 0.89508 0.85621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.18 8.89 127.69 1.14 2.31 16 2 N -0.47 -17.56 4.05 -726.36 -2.94 -20.50 16 3 C 0.05 1.48 4.52 86.30 0.39 1.87 16 4 C 0.12 3.32 3.46 30.59 0.11 3.42 16 5 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 6 O -0.56 -14.46 10.28 -144.35 -1.48 -15.95 16 7 C 0.05 1.08 6.68 71.98 0.48 1.56 16 8 O -0.58 -12.47 13.62 -144.35 -1.97 -14.44 16 9 C 0.14 6.34 5.19 133.32 0.69 7.04 16 10 N -0.48 -21.79 9.78 -191.08 -1.87 -23.66 16 11 C -0.02 -0.91 10.97 85.37 0.94 0.02 16 12 C 0.05 2.54 5.56 -21.18 -0.12 2.42 16 13 C -0.46 -22.58 9.07 23.39 0.21 -22.37 16 14 H 0.10 4.32 7.87 -2.91 -0.02 4.29 16 15 C 0.03 1.52 5.27 85.23 0.45 1.97 16 16 N -0.82 -39.65 10.84 21.82 0.24 -39.41 16 17 Si 0.99 34.67 29.57 68.60 2.03 36.70 16 18 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 19 H -0.27 -9.09 7.11 99.48 0.71 -8.38 16 20 H -0.25 -8.46 7.11 99.48 0.71 -7.76 16 21 C -0.15 -7.36 8.49 22.65 0.19 -7.16 16 22 C -0.02 -1.13 6.32 22.28 0.14 -0.99 16 23 Cl -0.08 -3.25 28.43 -2.72 -0.08 -3.33 16 24 H 0.02 0.84 7.95 -2.39 -0.02 0.82 16 25 H 0.11 3.25 5.51 -2.39 -0.01 3.24 16 26 H 0.04 1.45 8.09 -2.39 -0.02 1.43 16 27 H 0.05 1.50 7.97 -2.39 -0.02 1.48 16 28 H 0.06 2.15 7.96 -2.39 -0.02 2.13 16 29 H 0.38 7.09 9.04 -74.06 -0.67 6.43 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.40 4.32 9.12 -74.06 -0.68 3.64 16 33 H 0.15 6.26 8.06 -2.91 -0.02 6.24 16 34 H 0.29 12.90 8.30 -92.71 -0.77 12.13 16 35 H 0.13 6.64 6.27 -2.91 -0.02 6.62 16 Total: -1.00 -59.75 312.89 -1.66 -61.41 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: -0.21 Total: 29.07 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: 4.62 Total: -9.90 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -4.57 Total: -83.57 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -3.45 Total: -30.38 kcal Atomic # 14 Polarization: 34.67 SS G_CDS: 2.03 Total: 36.70 kcal Atomic # 17 Polarization: -3.25 SS G_CDS: -0.08 Total: -3.33 kcal Total: -59.75 -1.66 -61.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165533966.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.777 kcal (2) G-P(sol) polarization free energy of solvation -59.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds