Wall clock time and date at job start Tue Mar 31 2020 05:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86798 * 119.99385 * 2 1 4 4 H 1.48509 * 109.46600 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47295 * 299.99754 * 3 2 1 6 6 H 1.48494 * 109.47377 * 60.00362 * 3 2 1 7 7 C 1.40022 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99887 * 168.98148 * 7 2 1 9 9 C 1.41553 * 120.00403 * 348.97494 * 7 2 1 10 10 C 1.41185 * 120.99176 * 149.56091 * 9 7 2 11 11 C 1.36563 * 119.14293 * 179.97438 * 10 9 7 12 12 N 1.32096 * 121.26789 * 359.74898 * 11 10 9 13 13 C 1.32529 * 122.21849 * 0.52909 * 12 11 10 14 14 N 1.39080 * 119.65914 * 179.74892 * 13 12 11 15 15 C 1.46982 * 110.99870 * 250.32663 * 14 13 12 16 16 C 1.53151 * 109.47859 * 52.00579 * 15 14 13 17 17 C 1.52332 * 108.18621 * 50.44010 * 16 15 14 18 18 C 1.38952 * 124.35296 * 163.27228 * 17 16 15 19 19 C 1.33032 * 115.62020 * 180.14811 * 18 17 16 20 20 S 1.75777 * 109.60991 * 359.97438 * 19 18 17 21 21 C 1.34802 * 121.89108 * 343.34857 * 17 16 15 22 22 C 1.47112 * 110.99645 * 14.15368 * 14 13 12 23 23 C 1.38747 * 120.68271 * 359.46961 * 13 12 11 24 24 H 0.96997 * 120.00745 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.42939 * 359.96406 * 10 9 7 26 26 H 1.07998 * 119.36421 * 180.02562 * 11 10 9 27 27 H 1.08998 * 109.46797 * 292.00253 * 15 14 13 28 28 H 1.09004 * 109.46342 * 172.00390 * 15 14 13 29 29 H 1.08996 * 109.72106 * 290.76479 * 16 15 14 30 30 H 1.09005 * 109.71728 * 170.11105 * 16 15 14 31 31 H 1.07998 * 122.18956 * 0.12257 * 18 17 16 32 32 H 1.08006 * 125.19540 * 179.71493 * 19 18 17 33 33 H 1.08998 * 109.62461 * 46.85339 * 22 14 13 34 34 H 1.09006 * 109.62292 * 167.22865 * 22 14 13 35 35 H 1.07998 * 120.66513 * 180.23081 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7014 1.3465 -0.0006 5 1 1.8825 2.3965 -1.2125 6 1 1.8826 2.3965 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0726 -1.2211 -0.1793 9 6 1.3195 -2.4274 0.2333 10 6 1.7600 -3.6360 -0.3484 11 6 1.0679 -4.7861 -0.0969 12 7 0.0010 -4.7879 0.6819 13 6 -0.4609 -3.6833 1.2501 14 7 -1.5922 -3.7455 2.0567 15 6 -2.7392 -3.0962 1.4062 16 6 -2.9177 -3.6676 -0.0034 17 6 -2.9248 -5.1876 0.0971 18 6 -3.3893 -6.0371 -0.8996 19 6 -3.3171 -7.3372 -0.6270 20 16 -2.6275 -7.5670 0.9734 21 6 -2.4697 -5.8311 1.1906 22 6 -1.9095 -5.1371 2.4132 23 6 0.1759 -2.4664 1.0533 24 1 -0.4851 0.8400 0.0004 25 1 2.6328 -3.6508 -0.9843 26 1 1.4019 -5.7128 -0.5398 27 1 -2.5613 -2.0227 1.3433 28 1 -3.6407 -3.2815 1.9902 29 1 -2.0926 -3.3448 -0.6383 30 1 -3.8625 -3.3223 -0.4233 31 1 -3.7834 -5.6662 -1.8342 32 1 -3.6375 -8.1302 -1.2865 33 1 -1.0034 -5.6468 2.7406 34 1 -2.6473 -5.1503 3.2155 35 1 -0.1986 -1.5670 1.5195 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166684726.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:10 Heat of formation + Delta-G solvation = 74.681067 kcal Electronic energy + Delta-G solvation = -20318.729990 eV Core-core repulsion = 17408.073839 eV Total energy + Delta-G solvation = -2910.656151 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.95910 -37.71157 -35.63399 -33.94374 -30.98387 -30.31670 -30.16415 -28.12049 -25.91063 -24.15276 -23.51587 -21.87068 -21.35789 -19.99612 -18.21316 -17.08318 -16.79445 -15.70510 -15.02238 -14.95806 -14.56883 -14.41850 -14.08331 -13.58553 -13.23346 -12.81929 -12.59218 -12.44227 -12.33129 -12.04620 -11.60923 -11.45938 -11.28923 -11.20274 -11.11811 -10.88098 -10.72475 -10.21301 -10.20369 -9.98357 -9.42172 -8.75442 -8.24688 -7.94581 -7.88913 -7.72854 -7.10095 -6.76898 -4.58654 1.46395 2.06317 2.41744 2.69603 2.82607 3.04443 3.09270 3.15367 3.22016 3.88575 4.39324 4.72205 5.17872 5.30069 5.48409 5.49312 5.60306 5.68282 5.74502 5.89960 5.91655 6.04998 6.13770 6.35137 6.47116 6.50941 6.62273 6.77965 6.83237 6.92526 7.00428 7.12013 7.17503 7.41148 7.53194 7.65254 7.93422 8.25253 8.57776 8.75820 8.78531 9.56792 10.13755 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.029344 B = 0.005098 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.967147 B = 5491.350113 C = 5769.174670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.078 3.922 3 Si 0.911 3.089 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.460 4.460 8 H 0.080 0.920 9 C 0.137 3.863 10 C -0.273 4.273 11 C 0.111 3.889 12 N -0.580 5.580 13 C 0.279 3.721 14 N -0.467 5.467 15 C 0.064 3.936 16 C -0.083 4.083 17 C -0.111 4.111 18 C -0.115 4.115 19 C -0.233 4.233 20 S 0.080 5.920 21 C -0.150 4.150 22 C 0.137 3.863 23 C -0.195 4.195 24 H 0.280 0.720 25 H 0.099 0.901 26 H 0.115 0.885 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.128 0.872 32 H 0.155 0.845 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.813 -6.387 1.156 9.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.140 4.140 3 Si 0.736 3.264 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.492 4.492 8 H 0.098 0.902 9 C 0.129 3.871 10 C -0.297 4.297 11 C -0.043 4.043 12 N -0.299 5.299 13 C 0.055 3.945 14 N -0.185 5.185 15 C -0.063 4.063 16 C -0.124 4.124 17 C -0.122 4.122 18 C -0.146 4.146 19 C -0.368 4.368 20 S 0.343 5.657 21 C -0.269 4.269 22 C 0.007 3.993 23 C -0.219 4.219 24 H 0.091 0.909 25 H 0.117 0.883 26 H 0.133 0.867 27 H 0.109 0.891 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.146 0.854 32 H 0.173 0.827 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.043 -8.044 2.656 11.017 hybrid contribution 0.416 2.249 -2.103 3.107 sum -6.627 -5.795 0.553 8.821 Atomic orbital electron populations 1.69742 1.07498 1.29183 1.35613 1.25879 0.94830 1.01220 0.92062 0.86213 0.80855 0.80808 0.78573 1.18449 1.19973 1.19655 1.19568 0.96053 0.90173 1.43421 0.90200 1.17716 0.90378 0.92167 0.86868 1.21665 1.05017 0.94878 1.08122 1.21338 0.91677 0.96301 0.95016 1.67331 1.16914 1.30279 1.15342 1.19324 0.92064 0.90631 0.92522 1.60177 1.03431 1.14644 1.40252 1.22221 0.92002 0.99809 0.92300 1.21089 1.02315 0.89685 0.99303 1.19363 1.02981 0.96500 0.93321 1.19868 1.02406 0.92381 0.99941 1.25126 1.11132 0.99840 1.00703 1.83766 1.62465 1.05919 1.13571 1.25317 1.04658 0.95138 1.01785 1.20702 0.99797 0.87174 0.91603 1.21606 1.00441 0.96099 1.03758 0.90863 0.88325 0.86694 0.89074 0.90951 0.89948 0.91077 0.85424 0.82732 0.89101 0.90077 0.85620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.59 11.04 55.55 0.61 -18.98 16 2 C 0.08 1.90 5.27 -17.35 -0.09 1.81 16 3 Si 0.91 18.17 29.57 -169.99 -5.03 13.14 16 4 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 5 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -11.85 9.11 -37.65 -0.34 -12.20 16 8 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 9 C 0.14 3.56 5.54 -106.56 -0.59 2.97 16 10 C -0.27 -6.59 9.85 -39.07 -0.38 -6.97 16 11 C 0.11 2.54 11.10 -18.04 -0.20 2.34 16 12 N -0.58 -13.28 7.31 -12.82 -0.09 -13.37 16 13 C 0.28 6.40 4.38 -154.98 -0.68 5.72 16 14 N -0.47 -9.24 4.98 -173.92 -0.87 -10.11 16 15 C 0.06 1.13 5.73 -3.70 -0.02 1.10 16 16 C -0.08 -1.50 5.73 -26.99 -0.15 -1.65 16 17 C -0.11 -1.96 5.27 -104.77 -0.55 -2.52 16 18 C -0.11 -1.84 10.03 -41.12 -0.41 -2.26 16 19 C -0.23 -3.41 11.21 28.92 0.32 -3.09 16 20 S 0.08 1.20 23.32 -107.50 -2.51 -1.30 16 21 C -0.15 -2.62 5.05 -35.22 -0.18 -2.79 16 22 C 0.14 2.41 5.79 -4.55 -0.03 2.39 16 23 C -0.19 -4.90 8.22 -38.43 -0.32 -5.21 16 24 H 0.28 6.30 8.29 -40.82 -0.34 5.96 16 25 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 26 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 27 H 0.09 1.70 7.98 -51.93 -0.41 1.28 16 28 H 0.07 1.10 8.05 -51.93 -0.42 0.68 16 29 H 0.08 1.79 7.44 -51.93 -0.39 1.40 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 32 H 0.16 1.83 8.06 -52.48 -0.42 1.40 16 33 H 0.09 1.69 7.70 -51.93 -0.40 1.29 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.13 3.29 6.49 -52.49 -0.34 2.95 16 LS Contribution 302.13 15.07 4.55 4.55 Total: -1.00 -27.00 302.13 -10.99 -38.00 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -4.04 Total: 8.42 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -3.62 Total: -20.35 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: -0.35 Total: -42.46 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.51 Total: -1.30 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.00 -10.99 -38.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166684726.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.677 kcal (2) G-P(sol) polarization free energy of solvation -27.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds