Wall clock time and date at job start Tue Mar 31 2020 05:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86798 * 119.99385 * 2 1 4 4 H 1.48509 * 109.46600 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47295 * 299.99754 * 3 2 1 6 6 H 1.48494 * 109.47377 * 60.00362 * 3 2 1 7 7 C 1.40022 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99887 * 168.98148 * 7 2 1 9 9 C 1.41553 * 120.00403 * 348.97494 * 7 2 1 10 10 C 1.41185 * 120.99176 * 149.56091 * 9 7 2 11 11 C 1.36563 * 119.14293 * 179.97438 * 10 9 7 12 12 N 1.32096 * 121.26789 * 359.74898 * 11 10 9 13 13 C 1.32529 * 122.21849 * 0.52909 * 12 11 10 14 14 N 1.39080 * 119.65914 * 179.74892 * 13 12 11 15 15 C 1.46982 * 110.99870 * 250.32663 * 14 13 12 16 16 C 1.53151 * 109.47859 * 52.00579 * 15 14 13 17 17 C 1.52332 * 108.18621 * 50.44010 * 16 15 14 18 18 C 1.38952 * 124.35296 * 163.27228 * 17 16 15 19 19 C 1.33032 * 115.62020 * 180.14811 * 18 17 16 20 20 S 1.75777 * 109.60991 * 359.97438 * 19 18 17 21 21 C 1.34802 * 121.89108 * 343.34857 * 17 16 15 22 22 C 1.47112 * 110.99645 * 14.15368 * 14 13 12 23 23 C 1.38747 * 120.68271 * 359.46961 * 13 12 11 24 24 H 0.96997 * 120.00745 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.42939 * 359.96406 * 10 9 7 26 26 H 1.07998 * 119.36421 * 180.02562 * 11 10 9 27 27 H 1.08998 * 109.46797 * 292.00253 * 15 14 13 28 28 H 1.09004 * 109.46342 * 172.00390 * 15 14 13 29 29 H 1.08996 * 109.72106 * 290.76479 * 16 15 14 30 30 H 1.09005 * 109.71728 * 170.11105 * 16 15 14 31 31 H 1.07998 * 122.18956 * 0.12257 * 18 17 16 32 32 H 1.08006 * 125.19540 * 179.71493 * 19 18 17 33 33 H 1.08998 * 109.62461 * 46.85339 * 22 14 13 34 34 H 1.09006 * 109.62292 * 167.22865 * 22 14 13 35 35 H 1.07998 * 120.66513 * 180.23081 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7014 1.3465 -0.0006 5 1 1.8825 2.3965 -1.2125 6 1 1.8826 2.3965 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0726 -1.2211 -0.1793 9 6 1.3195 -2.4274 0.2333 10 6 1.7600 -3.6360 -0.3484 11 6 1.0679 -4.7861 -0.0969 12 7 0.0010 -4.7879 0.6819 13 6 -0.4609 -3.6833 1.2501 14 7 -1.5922 -3.7455 2.0567 15 6 -2.7392 -3.0962 1.4062 16 6 -2.9177 -3.6676 -0.0034 17 6 -2.9248 -5.1876 0.0971 18 6 -3.3893 -6.0371 -0.8996 19 6 -3.3171 -7.3372 -0.6270 20 16 -2.6275 -7.5670 0.9734 21 6 -2.4697 -5.8311 1.1906 22 6 -1.9095 -5.1371 2.4132 23 6 0.1759 -2.4664 1.0533 24 1 -0.4851 0.8400 0.0004 25 1 2.6328 -3.6508 -0.9843 26 1 1.4019 -5.7128 -0.5398 27 1 -2.5613 -2.0227 1.3433 28 1 -3.6407 -3.2815 1.9902 29 1 -2.0926 -3.3448 -0.6383 30 1 -3.8625 -3.3223 -0.4233 31 1 -3.7834 -5.6662 -1.8342 32 1 -3.6375 -8.1302 -1.2865 33 1 -1.0034 -5.6468 2.7406 34 1 -2.6473 -5.1503 3.2155 35 1 -0.1986 -1.5670 1.5195 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166684726.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:10 Heat of formation + Delta-G solvation = 61.058825 kcal Electronic energy + Delta-G solvation = -20319.320695 eV Core-core repulsion = 17408.073839 eV Total energy + Delta-G solvation = -2911.246856 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.52754 -39.32589 -37.07844 -35.77969 -32.65001 -31.97701 -31.66466 -29.70899 -27.78795 -25.61231 -24.92948 -23.49560 -23.03499 -21.56012 -19.81224 -18.55348 -18.26240 -17.45373 -16.62821 -16.54826 -16.04801 -15.90081 -15.84513 -15.11209 -14.69029 -14.44092 -14.25509 -13.92043 -13.75123 -13.61003 -13.12568 -13.02059 -12.88193 -12.69143 -12.62432 -12.48213 -12.05843 -11.93673 -11.82727 -11.52547 -11.21893 -10.39161 -9.93537 -9.78063 -9.25755 -9.06398 -8.85955 -8.58179 -6.53035 0.22306 0.83228 0.89563 1.02789 1.19376 1.39803 1.53513 1.53941 1.87566 2.20802 2.71766 3.00053 3.68553 3.85821 3.98955 4.03610 4.17402 4.26440 4.36241 4.50564 4.60003 4.67223 4.76855 4.81320 4.92139 4.95846 5.02776 5.08967 5.23311 5.26616 5.35381 5.54943 5.58637 5.70518 5.81679 5.98372 6.02500 6.37783 6.73130 6.86635 6.87964 7.72172 8.33081 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.029344 B = 0.005098 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.967147 B = 5491.350113 C = 5769.174670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.040 3.960 3 Si 0.984 3.016 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.264 1.264 7 C -0.495 4.495 8 H 0.078 0.922 9 C 0.110 3.890 10 C -0.290 4.290 11 C 0.109 3.891 12 N -0.577 5.577 13 C 0.291 3.709 14 N -0.476 5.476 15 C 0.067 3.933 16 C -0.076 4.076 17 C -0.125 4.125 18 C -0.136 4.136 19 C -0.221 4.221 20 S 0.110 5.890 21 C -0.173 4.173 22 C 0.138 3.862 23 C -0.218 4.218 24 H 0.289 0.711 25 H 0.107 0.893 26 H 0.144 0.856 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.037 0.963 30 H 0.093 0.907 31 H 0.141 0.859 32 H 0.186 0.814 33 H 0.078 0.922 34 H 0.110 0.890 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.765 -7.346 1.123 10.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.177 4.177 3 Si 0.805 3.195 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.189 1.189 7 C -0.526 4.526 8 H 0.096 0.904 9 C 0.102 3.898 10 C -0.313 4.313 11 C -0.045 4.045 12 N -0.295 5.295 13 C 0.066 3.934 14 N -0.195 5.195 15 C -0.059 4.059 16 C -0.117 4.117 17 C -0.136 4.136 18 C -0.167 4.167 19 C -0.356 4.356 20 S 0.373 5.627 21 C -0.292 4.292 22 C 0.008 3.992 23 C -0.242 4.242 24 H 0.099 0.901 25 H 0.125 0.875 26 H 0.161 0.839 27 H 0.092 0.908 28 H 0.123 0.877 29 H 0.056 0.944 30 H 0.112 0.888 31 H 0.158 0.842 32 H 0.204 0.796 33 H 0.096 0.904 34 H 0.128 0.872 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.008 -9.023 2.626 12.347 hybrid contribution 0.636 2.424 -2.083 3.259 sum -7.372 -6.599 0.544 9.909 Atomic orbital electron populations 1.69800 1.08798 1.30542 1.35380 1.26706 0.95619 1.04241 0.91085 0.85126 0.79293 0.76174 0.78925 1.18314 1.19070 1.18873 1.19817 0.96214 0.91314 1.45249 0.90412 1.18092 0.91136 0.93180 0.87440 1.21828 1.05823 0.94917 1.08775 1.21793 0.91227 0.96983 0.94519 1.67480 1.16789 1.29988 1.15254 1.19482 0.92514 0.89848 0.91595 1.60100 1.03239 1.16527 1.39598 1.22231 0.92258 0.98617 0.92790 1.20954 1.01615 0.90659 0.98491 1.19478 1.03774 0.96186 0.94200 1.20022 1.03472 0.92845 1.00342 1.25556 1.09288 1.00139 1.00645 1.83652 1.61794 1.03519 1.13691 1.25346 1.05275 0.96920 1.01679 1.20764 1.00082 0.85618 0.92690 1.21492 1.01359 0.96416 1.04982 0.90056 0.87456 0.83897 0.90789 0.87744 0.94416 0.88839 0.84165 0.79643 0.90409 0.87184 0.87481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.59 11.04 21.84 0.24 -41.35 16 2 C 0.04 1.95 5.27 85.29 0.45 2.40 16 3 Si 0.98 37.55 29.57 68.60 2.03 39.58 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 5 H -0.27 -9.72 7.11 99.48 0.71 -9.02 16 6 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 7 C -0.49 -26.36 9.11 23.52 0.21 -26.14 16 8 H 0.08 4.01 7.87 -2.91 -0.02 3.99 16 9 C 0.11 5.93 5.54 -21.12 -0.12 5.81 16 10 C -0.29 -14.30 9.85 22.60 0.22 -14.08 16 11 C 0.11 4.98 11.10 84.26 0.94 5.91 16 12 N -0.58 -26.39 7.31 -194.47 -1.42 -27.81 16 13 C 0.29 13.61 4.38 132.90 0.58 14.19 16 14 N -0.48 -18.83 4.98 -704.16 -3.50 -22.33 16 15 C 0.07 2.37 5.73 86.34 0.49 2.86 16 16 C -0.08 -2.74 5.73 30.42 0.17 -2.57 16 17 C -0.12 -4.26 5.27 -19.96 -0.11 -4.37 16 18 C -0.14 -4.08 10.03 21.28 0.21 -3.86 16 19 C -0.22 -5.76 11.21 66.66 0.75 -5.01 16 20 S 0.11 3.02 23.32 -56.49 -1.32 1.71 16 21 C -0.17 -5.74 5.05 25.10 0.13 -5.61 16 22 C 0.14 4.66 5.79 85.72 0.50 5.16 16 23 C -0.22 -11.42 8.22 23.01 0.19 -11.23 16 24 H 0.29 13.21 8.29 -92.71 -0.77 12.44 16 25 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 26 H 0.14 5.60 8.06 -2.91 -0.02 5.58 16 27 H 0.07 2.84 7.98 -2.39 -0.02 2.82 16 28 H 0.10 2.99 8.05 -2.38 -0.02 2.97 16 29 H 0.04 1.69 7.44 -2.39 -0.02 1.67 16 30 H 0.09 2.83 8.14 -2.38 -0.02 2.81 16 31 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 32 H 0.19 3.59 8.06 -2.91 -0.02 3.56 16 33 H 0.08 2.82 7.70 -2.39 -0.02 2.80 16 34 H 0.11 3.04 8.14 -2.38 -0.02 3.02 16 35 H 0.11 5.91 6.49 -2.91 -0.02 5.90 16 Total: -1.00 -59.37 302.13 1.75 -57.62 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: 1.10 Total: 29.13 kcal Atomic # 6 Polarization: -41.17 SS G_CDS: 4.62 Total: -36.54 kcal Atomic # 7 Polarization: -86.81 SS G_CDS: -4.68 Total: -91.49 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 2.03 Total: 39.58 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -1.32 Total: 1.71 kcal Total: -59.37 1.75 -57.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166684726.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.677 kcal (2) G-P(sol) polarization free energy of solvation -59.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds