Wall clock time and date at job start Tue Mar 31 2020 06:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47090 * 2 1 4 4 C 1.52993 * 109.47364 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47332 * 179.97438 * 4 3 2 6 6 C 1.37009 * 119.99838 * 89.99959 * 5 4 3 7 7 H 1.08000 * 119.99963 * 208.14847 * 6 5 4 8 8 C 1.38861 * 120.00203 * 27.87877 * 6 5 4 9 9 N 1.31516 * 120.00033 * 211.88227 * 8 6 5 10 10 Si 1.86803 * 120.00143 * 31.87530 * 8 6 5 11 11 H 1.48502 * 109.47055 * 357.28634 * 10 8 6 12 12 H 1.48500 * 109.46987 * 117.28449 * 10 8 6 13 13 H 1.48495 * 109.47432 * 237.28646 * 10 8 6 14 14 C 1.38133 * 120.00037 * 270.00172 * 5 4 3 15 15 N 1.33095 * 120.04713 * 354.50714 * 14 5 4 16 16 C 1.32247 * 120.02382 * 179.72016 * 15 14 5 17 17 Cl 1.73602 * 119.93549 * 180.27939 * 16 15 14 18 18 N 1.32375 * 120.12522 * 0.55632 * 16 15 14 19 19 C 1.32877 * 120.09251 * 359.72830 * 18 16 15 20 20 O 1.35316 * 120.01172 * 180.02562 * 19 18 16 21 21 C 1.42898 * 116.99735 * 359.97276 * 20 19 18 22 22 N 1.32681 * 119.97401 * 359.97438 * 19 18 16 23 23 H 1.09005 * 109.47132 * 299.99539 * 1 2 3 24 24 H 1.08999 * 109.47907 * 59.99811 * 1 2 3 25 25 H 1.09009 * 109.47197 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47132 * 240.00461 * 2 1 3 27 27 H 1.08998 * 109.47258 * 119.99809 * 2 1 3 28 28 H 1.09003 * 109.47162 * 59.99892 * 3 2 1 29 29 H 1.09007 * 109.47114 * 299.99982 * 3 2 1 30 30 H 1.09003 * 109.47289 * 59.99700 * 4 3 2 31 31 H 1.08996 * 109.47070 * 300.00274 * 4 3 2 32 32 H 0.97000 * 119.99929 * 179.97438 * 9 8 6 33 33 H 1.08995 * 109.47301 * 60.00328 * 21 20 19 34 34 H 1.09004 * 109.46544 * 180.02562 * 21 20 19 35 35 H 1.08998 * 109.47236 * 300.00044 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8239 -0.0013 6 6 4.2870 3.4701 1.1850 7 1 4.1991 4.5451 1.2400 8 6 4.6265 2.7423 2.3179 9 7 4.2548 3.1647 3.5066 10 14 5.6110 1.1633 2.1535 11 1 5.8464 0.8742 0.7160 12 1 6.9149 1.3185 2.8471 13 1 4.8546 0.0422 2.7665 14 6 4.2879 3.4747 -1.1978 15 7 4.1714 2.8154 -2.3481 16 6 4.3860 3.4404 -3.4937 17 17 4.2262 2.5800 -4.9931 18 7 4.7276 4.7192 -3.4990 19 6 4.8509 5.3807 -2.3531 20 8 5.1997 6.6881 -2.3604 21 6 5.4208 7.2933 -3.6359 22 7 4.6307 4.7589 -1.2018 23 1 -0.3634 0.5138 0.8901 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 3.9329 0.9289 -0.8908 31 1 3.9336 0.9286 0.8890 32 1 4.4916 2.6561 4.2979 33 1 4.5098 7.2300 -4.2309 34 1 5.6938 8.3397 -3.4990 35 1 6.2279 6.7719 -4.1505 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167128488.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:52 Heat of formation + Delta-G solvation = 42.809463 kcal Electronic energy + Delta-G solvation = -20779.582622 eV Core-core repulsion = 17454.651445 eV Total energy + Delta-G solvation = -3324.931177 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.094 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.72539 -38.38653 -37.25339 -36.40316 -34.42630 -32.87564 -32.42730 -31.46750 -28.72881 -27.23679 -25.62076 -23.99790 -23.51847 -21.65849 -20.86211 -18.69106 -18.12010 -17.10321 -16.23792 -16.02275 -15.24504 -15.19072 -14.88197 -14.38252 -13.98721 -13.72299 -13.35510 -13.17821 -13.01830 -12.60979 -12.31230 -12.03898 -11.79509 -11.73569 -11.47174 -11.12625 -11.04794 -10.84632 -10.79453 -10.57958 -10.30328 -10.16696 -9.77552 -9.21070 -9.20062 -8.96113 -8.56986 -7.86853 -6.86916 -4.12311 1.71766 1.78468 1.94359 2.90526 2.97764 3.06468 3.11509 3.76352 3.90720 4.39060 4.69151 4.89093 5.24489 5.28477 5.34015 5.40478 5.47014 5.50963 5.59296 5.73960 5.97015 5.97489 6.02777 6.10462 6.12722 6.27252 6.39705 6.60491 6.76767 6.92402 7.18680 7.44648 7.75489 7.87157 8.22373 8.70973 8.92416 9.36946 10.20571 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.013382 B = 0.006782 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.861638 B = 4127.707345 C = 5357.115856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.127 4.127 4 C 0.118 3.882 5 N -0.371 5.371 6 C -0.306 4.306 7 H 0.128 0.872 8 C 0.071 3.929 9 N -0.816 5.816 10 Si 0.865 3.135 11 H -0.257 1.257 12 H -0.277 1.277 13 H -0.270 1.270 14 C 0.537 3.463 15 N -0.619 5.619 16 C 0.465 3.535 17 Cl 0.000 7.000 18 N -0.676 5.676 19 C 0.571 3.429 20 O -0.289 6.289 21 C 0.049 3.951 22 N -0.589 5.589 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.283 0.717 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.975 -2.546 -9.505 10.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.166 4.166 4 C -0.005 4.005 5 N -0.064 5.064 6 C -0.436 4.436 7 H 0.145 0.855 8 C -0.142 4.142 9 N -0.446 5.446 10 Si 0.689 3.311 11 H -0.181 1.181 12 H -0.204 1.204 13 H -0.196 1.196 14 C 0.183 3.817 15 N -0.359 5.359 16 C 0.159 3.841 17 Cl 0.028 6.972 18 N -0.429 5.429 19 C 0.259 3.741 20 O -0.188 6.188 21 C -0.048 4.048 22 N -0.334 5.334 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.004 -2.528 -8.799 9.372 hybrid contribution 0.602 -0.770 -0.327 1.031 sum -1.402 -3.299 -9.127 9.806 Atomic orbital electron populations 1.21733 0.95924 1.01044 1.01859 1.21455 0.95825 0.96834 1.01847 1.21897 0.94919 0.96677 1.03098 1.21799 0.94478 0.82341 1.01888 1.42540 1.51278 1.11158 1.01395 1.19403 1.46731 0.95661 0.81796 0.85471 1.25314 0.95821 0.98553 0.94529 1.69900 1.36188 1.39675 0.98874 0.87092 0.81370 0.82754 0.79836 1.18120 1.20370 1.19587 1.18614 0.92564 0.85082 0.85395 1.67756 1.31125 1.39910 0.97123 1.21971 0.89317 0.85389 0.87418 1.98376 1.95518 1.75177 1.28163 1.67847 1.34445 1.10012 1.30638 1.20177 0.84990 0.85073 0.83874 1.86052 1.82011 1.18050 1.32696 1.22874 1.01989 0.96878 0.83014 1.67654 1.28875 1.10046 1.26863 0.92707 0.92858 0.93104 0.91925 0.92137 0.90752 0.91797 0.89534 0.91739 0.90654 0.92140 0.88516 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 37.15 0.37 -1.49 16 2 C -0.12 -1.76 5.93 -26.73 -0.16 -1.92 16 3 C -0.13 -2.29 5.54 -26.73 -0.15 -2.44 16 4 C 0.12 2.43 3.97 -4.04 -0.02 2.41 16 5 N -0.37 -8.89 2.40 -116.87 -0.28 -9.17 16 6 C -0.31 -8.00 9.52 -15.01 -0.14 -8.14 16 7 H 0.13 3.68 7.62 -52.49 -0.40 3.28 16 8 C 0.07 1.78 5.19 -17.46 -0.09 1.68 16 9 N -0.82 -21.16 13.96 55.49 0.77 -20.39 16 10 Si 0.86 18.97 25.29 -169.99 -4.30 14.67 16 11 H -0.26 -5.67 6.35 56.52 0.36 -5.31 16 12 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 13 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 14 C 0.54 12.95 8.14 -321.87 -2.62 10.33 16 15 N -0.62 -13.66 9.22 -12.36 -0.11 -13.77 16 16 C 0.46 9.41 8.25 -91.26 -0.75 8.66 16 17 Cl 0.00 0.00 29.30 -51.86 -1.52 -1.51 16 18 N -0.68 -13.80 9.37 -13.15 -0.12 -13.92 16 19 C 0.57 12.52 8.55 -90.45 -0.77 11.74 16 20 O -0.29 -5.54 10.55 -17.64 -0.19 -5.72 16 21 C 0.05 0.65 10.39 101.05 1.05 1.70 16 22 N -0.59 -14.55 9.45 -15.45 -0.15 -14.70 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.09 1.72 7.29 -51.93 -0.38 1.34 16 31 H 0.06 1.34 3.15 -51.93 -0.16 1.18 16 32 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 33 H 0.06 0.78 8.11 -51.93 -0.42 0.36 16 34 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.78 8.11 -51.93 -0.42 0.36 16 LS Contribution 313.23 15.07 4.72 4.72 Total: -1.00 -28.02 313.23 -8.80 -36.82 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -4.34 Total: 0.44 kcal Atomic # 6 Polarization: 25.82 SS G_CDS: -3.28 Total: 22.54 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: 0.11 Total: -71.95 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.19 Total: -5.72 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.30 Total: 14.67 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -1.52 Total: -1.51 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.02 -8.80 -36.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128488.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.628 kcal (2) G-P(sol) polarization free energy of solvation -28.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds