Wall clock time and date at job start Tue Mar 31 2020 06:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47090 * 2 1 4 4 C 1.52993 * 109.47364 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47332 * 179.97438 * 4 3 2 6 6 C 1.37009 * 119.99838 * 89.99959 * 5 4 3 7 7 H 1.08000 * 119.99963 * 208.14847 * 6 5 4 8 8 C 1.38861 * 120.00203 * 27.87877 * 6 5 4 9 9 N 1.31516 * 120.00033 * 211.88227 * 8 6 5 10 10 Si 1.86803 * 120.00143 * 31.87530 * 8 6 5 11 11 H 1.48502 * 109.47055 * 357.28634 * 10 8 6 12 12 H 1.48500 * 109.46987 * 117.28449 * 10 8 6 13 13 H 1.48495 * 109.47432 * 237.28646 * 10 8 6 14 14 C 1.38133 * 120.00037 * 270.00172 * 5 4 3 15 15 N 1.33095 * 120.04713 * 354.50714 * 14 5 4 16 16 C 1.32247 * 120.02382 * 179.72016 * 15 14 5 17 17 Cl 1.73602 * 119.93549 * 180.27939 * 16 15 14 18 18 N 1.32375 * 120.12522 * 0.55632 * 16 15 14 19 19 C 1.32877 * 120.09251 * 359.72830 * 18 16 15 20 20 O 1.35316 * 120.01172 * 180.02562 * 19 18 16 21 21 C 1.42898 * 116.99735 * 359.97276 * 20 19 18 22 22 N 1.32681 * 119.97401 * 359.97438 * 19 18 16 23 23 H 1.09005 * 109.47132 * 299.99539 * 1 2 3 24 24 H 1.08999 * 109.47907 * 59.99811 * 1 2 3 25 25 H 1.09009 * 109.47197 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47132 * 240.00461 * 2 1 3 27 27 H 1.08998 * 109.47258 * 119.99809 * 2 1 3 28 28 H 1.09003 * 109.47162 * 59.99892 * 3 2 1 29 29 H 1.09007 * 109.47114 * 299.99982 * 3 2 1 30 30 H 1.09003 * 109.47289 * 59.99700 * 4 3 2 31 31 H 1.08996 * 109.47070 * 300.00274 * 4 3 2 32 32 H 0.97000 * 119.99929 * 179.97438 * 9 8 6 33 33 H 1.08995 * 109.47301 * 60.00328 * 21 20 19 34 34 H 1.09004 * 109.46544 * 180.02562 * 21 20 19 35 35 H 1.08998 * 109.47236 * 300.00044 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8239 -0.0013 6 6 4.2870 3.4701 1.1850 7 1 4.1991 4.5451 1.2400 8 6 4.6265 2.7423 2.3179 9 7 4.2548 3.1647 3.5066 10 14 5.6110 1.1633 2.1535 11 1 5.8464 0.8742 0.7160 12 1 6.9149 1.3185 2.8471 13 1 4.8546 0.0422 2.7665 14 6 4.2879 3.4747 -1.1978 15 7 4.1714 2.8154 -2.3481 16 6 4.3860 3.4404 -3.4937 17 17 4.2262 2.5800 -4.9931 18 7 4.7276 4.7192 -3.4990 19 6 4.8509 5.3807 -2.3531 20 8 5.1997 6.6881 -2.3604 21 6 5.4208 7.2933 -3.6359 22 7 4.6307 4.7589 -1.2018 23 1 -0.3634 0.5138 0.8901 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 3.9329 0.9289 -0.8908 31 1 3.9336 0.9286 0.8890 32 1 4.4916 2.6561 4.2979 33 1 4.5098 7.2300 -4.2309 34 1 5.6938 8.3397 -3.4990 35 1 6.2279 6.7719 -4.1505 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167128488.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:52 Heat of formation + Delta-G solvation = 26.205624 kcal Electronic energy + Delta-G solvation = -20780.302618 eV Core-core repulsion = 17454.651445 eV Total energy + Delta-G solvation = -3325.651173 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.094 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.44027 -39.95660 -38.86157 -37.89944 -35.79846 -34.71901 -34.13489 -33.16777 -30.14781 -28.50791 -27.42534 -25.53297 -25.11150 -23.31094 -22.13995 -20.38743 -19.78382 -18.87220 -17.95983 -17.60628 -16.92263 -16.75759 -16.22455 -15.92752 -15.38281 -15.11900 -15.03569 -14.91198 -14.72813 -14.00209 -13.81215 -13.44803 -13.18452 -13.02963 -12.91284 -12.63101 -12.50799 -12.28112 -12.18441 -11.96350 -11.78899 -11.59038 -11.39852 -11.02775 -10.80796 -10.68204 -10.33127 -9.67937 -8.76364 -6.08607 0.02513 0.19575 0.22041 1.16528 1.31174 1.36819 1.46735 2.01557 2.14762 2.56132 2.97215 3.21444 3.68456 3.84271 3.98822 4.18316 4.30325 4.34728 4.44131 4.45148 4.54223 4.72002 4.76459 4.84515 4.94069 5.05167 5.16827 5.27034 5.33962 5.45342 5.49680 5.67610 5.99425 6.14711 6.29610 6.86880 7.02018 7.59627 8.36848 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.013382 B = 0.006782 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.861638 B = 4127.707345 C = 5357.115856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C -0.117 4.117 4 C 0.116 3.884 5 N -0.385 5.385 6 C -0.326 4.326 7 H 0.082 0.918 8 C 0.039 3.961 9 N -0.856 5.856 10 Si 0.922 3.078 11 H -0.258 1.258 12 H -0.280 1.280 13 H -0.244 1.244 14 C 0.540 3.460 15 N -0.623 5.623 16 C 0.456 3.544 17 Cl 0.048 6.952 18 N -0.661 5.661 19 C 0.568 3.432 20 O -0.302 6.302 21 C 0.041 3.959 22 N -0.632 5.632 23 H 0.047 0.953 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.291 0.709 33 H 0.066 0.934 34 H 0.135 0.865 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.880 -4.116 -11.604 12.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C -0.156 4.156 4 C -0.006 4.006 5 N -0.080 5.080 6 C -0.456 4.456 7 H 0.100 0.900 8 C -0.170 4.170 9 N -0.489 5.489 10 Si 0.744 3.256 11 H -0.182 1.182 12 H -0.207 1.207 13 H -0.169 1.169 14 C 0.184 3.816 15 N -0.363 5.363 16 C 0.152 3.848 17 Cl 0.075 6.925 18 N -0.413 5.413 19 C 0.257 3.743 20 O -0.201 6.201 21 C -0.054 4.054 22 N -0.379 5.379 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.153 0.847 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.912 -4.076 -10.945 11.835 hybrid contribution 0.584 -0.098 0.024 0.592 sum -1.328 -4.174 -10.922 11.767 Atomic orbital electron populations 1.21717 0.94442 1.02507 1.01644 1.21462 0.97100 0.94106 1.02838 1.21817 0.93342 0.99025 1.01443 1.21980 0.95867 0.80702 1.02037 1.42593 1.52458 1.12258 1.00664 1.18934 1.49125 0.94089 0.83429 0.90029 1.25843 0.95853 1.01575 0.93769 1.69941 1.37513 1.41714 0.99699 0.86202 0.79792 0.79894 0.79666 1.18237 1.20675 1.16857 1.18888 0.91453 0.85040 0.86208 1.67874 1.31774 1.39648 0.97034 1.22615 0.87899 0.85699 0.88614 1.98393 1.95123 1.74128 1.24838 1.68039 1.33580 1.10012 1.29640 1.20438 0.84174 0.86089 0.83626 1.86074 1.81350 1.16675 1.36021 1.23311 1.02533 0.98495 0.81040 1.67646 1.30441 1.10962 1.28897 0.93334 0.92758 0.90759 0.90408 0.91617 0.93072 0.92722 0.88654 0.91897 0.89903 0.91531 0.84668 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.91 71.98 0.71 -2.65 16 2 C -0.12 -3.16 5.93 30.59 0.18 -2.98 16 3 C -0.12 -4.22 5.54 30.59 0.17 -4.05 16 4 C 0.12 4.74 3.97 86.38 0.34 5.08 16 5 N -0.39 -18.91 2.40 -523.66 -1.26 -20.17 16 6 C -0.33 -17.88 9.52 84.03 0.80 -17.08 16 7 H 0.08 5.10 7.62 -2.91 -0.02 5.08 16 8 C 0.04 2.03 5.19 84.89 0.44 2.47 16 9 N -0.86 -45.98 13.96 21.65 0.30 -45.68 16 10 Si 0.92 39.18 25.29 68.60 1.73 40.91 16 11 H -0.26 -10.92 6.35 99.48 0.63 -10.29 16 12 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 13 H -0.24 -9.31 7.11 99.48 0.71 -8.61 16 14 C 0.54 26.40 8.14 261.16 2.13 28.53 16 15 N -0.62 -26.98 9.22 -193.03 -1.78 -28.75 16 16 C 0.46 17.74 8.25 180.57 1.49 19.23 16 17 Cl 0.05 1.39 29.30 -2.72 -0.08 1.31 16 18 N -0.66 -26.04 9.37 -308.27 -2.89 -28.93 16 19 C 0.57 24.84 8.55 180.29 1.54 26.38 16 20 O -0.30 -11.41 10.55 -86.04 -0.91 -12.31 16 21 C 0.04 1.00 10.39 113.37 1.18 2.18 16 22 N -0.63 -32.07 9.45 -315.65 -2.98 -35.05 16 23 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 24 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 26 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 30 H 0.10 3.67 7.29 -2.39 -0.02 3.65 16 31 H 0.06 2.56 3.15 -2.39 -0.01 2.55 16 32 H 0.29 14.10 8.31 -92.71 -0.77 13.32 16 33 H 0.07 1.57 8.11 -2.39 -0.02 1.55 16 34 H 0.14 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.07 1.57 8.11 -2.39 -0.02 1.55 16 Total: -1.00 -62.57 313.23 2.16 -60.41 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 1.03 Total: 11.15 kcal Atomic # 6 Polarization: 48.13 SS G_CDS: 8.98 Total: 57.11 kcal Atomic # 7 Polarization: -149.97 SS G_CDS: -8.61 Total: -158.58 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -0.91 Total: -12.31 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 1.73 Total: 40.91 kcal Atomic # 17 Polarization: 1.39 SS G_CDS: -0.08 Total: 1.31 kcal Total: -62.57 2.16 -60.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128488.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.619 kcal (2) G-P(sol) polarization free energy of solvation -62.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds