Wall clock time and date at job start Tue Mar 31 2020 05:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30784 * 1 3 3 Si 1.86800 * 120.00106 * 2 1 4 4 H 1.48496 * 109.47177 * 239.99962 * 3 2 1 5 5 H 1.48498 * 109.47137 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46782 * 120.00135 * 3 2 1 7 7 C 1.40071 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99957 * 194.45730 * 7 2 1 9 9 C 1.40896 * 119.99943 * 14.45331 * 7 2 1 10 10 C 1.40275 * 120.69760 * 25.22083 * 9 7 2 11 11 C 1.40234 * 118.13456 * 180.22620 * 10 9 7 12 12 C 1.40845 * 120.56803 * 179.18973 * 11 10 9 13 13 C 1.36142 * 119.70287 * 179.97438 * 12 11 10 14 14 C 1.39292 * 120.77199 * 0.02562 * 13 12 11 15 15 C 1.36278 * 121.07127 * 0.02562 * 14 13 12 16 16 C 1.40436 * 119.96964 * 0.25715 * 15 14 13 17 17 N 1.34029 * 120.12870 * 179.70105 * 16 15 14 18 18 C 1.31362 * 121.97559 * 180.02562 * 17 16 15 19 19 N 1.38076 * 119.77003 * 179.97438 * 18 17 16 20 20 C 1.46507 * 120.00240 * 0.02562 * 19 18 17 21 21 C 1.53046 * 113.14998 * 255.54946 * 20 19 18 22 22 S 1.81493 * 89.86068 * 211.86307 * 21 20 19 23 23 C 1.53039 * 113.15335 * 155.11589 * 20 19 18 24 24 H 0.97004 * 119.99911 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.92942 * 359.40805 * 10 9 7 26 26 H 1.07996 * 120.15195 * 0.02562 * 12 11 10 27 27 H 1.08004 * 119.60916 * 180.02562 * 13 12 11 28 28 H 1.07999 * 119.46784 * 179.97438 * 14 13 12 29 29 H 1.08007 * 120.01805 * 179.97438 * 15 14 13 30 30 H 0.97005 * 120.00416 * 179.97438 * 19 18 17 31 31 H 1.09003 * 112.49324 * 25.32743 * 20 19 18 32 32 H 1.08997 * 113.14843 * 327.10723 * 21 20 19 33 33 H 1.09003 * 113.14705 * 96.58949 * 21 20 19 34 34 H 1.08993 * 113.14900 * 263.40828 * 23 20 19 35 35 H 1.08998 * 113.15046 * 32.85232 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 3.0956 1.6964 -1.2125 5 1 1.2769 2.7464 0.0006 6 1 3.0956 1.6963 1.2125 7 6 2.0082 -1.2131 -0.0005 8 1 3.0626 -1.2280 0.2330 9 6 1.3371 -2.4138 -0.3056 10 6 0.1771 -2.4054 -1.0943 11 6 -0.4503 -3.6309 -1.3607 12 6 -1.6274 -3.6802 -2.1326 13 6 -2.2216 -4.8797 -2.3808 14 6 -1.6794 -6.0608 -1.8797 15 6 -0.5425 -6.0496 -1.1285 16 6 0.0986 -4.8329 -0.8441 17 7 1.2136 -4.8176 -0.1006 18 6 1.8421 -3.7008 0.1879 19 7 2.9873 -3.7379 0.9584 20 6 3.4978 -5.0198 1.4508 21 6 3.2189 -5.2471 2.9383 22 16 4.7581 -6.1988 3.0769 23 6 5.0008 -4.9987 1.7381 24 1 -0.4850 0.8401 0.0004 25 1 -0.2290 -1.4796 -1.4745 26 1 -2.0562 -2.7706 -2.5265 27 1 -3.1239 -4.9157 -2.9733 28 1 -2.1684 -7.0007 -2.0892 29 1 -0.1370 -6.9757 -0.7481 30 1 3.4543 -2.9152 1.1731 31 1 3.1928 -5.8583 0.8246 32 1 3.2303 -4.3266 3.5220 33 1 2.3265 -5.8459 3.1204 34 1 5.5998 -5.3895 0.9156 35 1 5.3563 -4.0300 2.0893 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168362025.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:38 Heat of formation + Delta-G solvation = 66.674199 kcal Electronic energy + Delta-G solvation = -19618.061525 eV Core-core repulsion = 16707.058170 eV Total energy + Delta-G solvation = -2911.003355 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.25639 -37.58105 -35.69666 -34.11584 -31.95603 -31.54312 -29.24850 -27.94512 -26.16662 -25.56674 -22.73016 -21.80776 -21.12004 -20.26664 -18.24577 -17.08683 -16.74967 -16.00891 -15.68376 -15.00485 -14.73089 -14.58429 -13.72222 -13.51356 -13.28876 -12.99873 -12.87288 -12.73171 -12.50837 -11.93390 -11.74080 -11.66865 -11.36494 -11.20636 -11.00960 -10.81595 -10.67566 -10.46210 -10.30550 -9.94322 -9.56455 -8.90094 -8.88880 -8.27084 -7.76135 -7.28403 -6.98819 -6.69289 -4.49594 1.74151 1.87213 1.99274 2.19778 2.87241 2.93258 2.94887 3.45302 3.72013 3.92409 3.97215 4.62064 4.70136 5.00166 5.05141 5.39696 5.50834 5.57631 5.59700 5.77696 5.80610 5.83368 6.03108 6.14473 6.30352 6.42521 6.50665 6.77181 6.87968 7.04867 7.22358 7.39837 7.44441 7.59386 7.74759 7.80614 8.03184 8.16621 8.37592 8.50938 8.63484 9.38816 9.93645 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.009812 B = 0.007467 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2853.097489 B = 3748.846342 C = 6396.017950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.072 3.928 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.441 4.441 8 H 0.079 0.921 9 C 0.046 3.954 10 C -0.183 4.183 11 C -0.065 4.065 12 C -0.119 4.119 13 C -0.138 4.138 14 C -0.164 4.164 15 C -0.087 4.087 16 C 0.083 3.917 17 N -0.554 5.554 18 C 0.380 3.620 19 N -0.704 5.704 20 C 0.170 3.830 21 C -0.095 4.095 22 S -0.301 6.301 23 C -0.094 4.094 24 H 0.285 0.715 25 H 0.134 0.866 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.409 0.591 31 H 0.132 0.868 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.929 -2.908 1.080 5.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.147 4.147 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.470 4.470 8 H 0.097 0.903 9 C 0.039 3.961 10 C -0.209 4.209 11 C -0.068 4.068 12 C -0.138 4.138 13 C -0.157 4.157 14 C -0.184 4.184 15 C -0.106 4.106 16 C -0.035 4.035 17 N -0.274 5.274 18 C 0.127 3.873 19 N -0.341 5.341 20 C 0.061 3.939 21 C -0.246 4.246 22 S -0.076 6.076 23 C -0.244 4.244 24 H 0.097 0.903 25 H 0.152 0.848 26 H 0.126 0.874 27 H 0.120 0.880 28 H 0.121 0.879 29 H 0.127 0.873 30 H 0.247 0.753 31 H 0.149 0.851 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.586 -4.805 2.100 6.966 hybrid contribution -0.354 2.732 -0.561 2.812 sum 4.232 -2.072 1.539 4.957 Atomic orbital electron populations 1.69762 1.07615 1.29790 1.32951 1.25901 0.94849 1.01386 0.92608 0.86280 0.80091 0.79910 0.80076 1.18654 1.20110 1.18869 1.19260 0.96491 0.90638 1.40651 0.90281 1.18930 0.94485 0.89983 0.92716 1.21347 0.99946 0.95629 1.03942 1.18664 0.95618 0.94304 0.98252 1.20854 0.95842 0.96966 1.00163 1.20460 1.00051 0.93027 1.02187 1.20320 0.98050 0.97192 1.02879 1.20422 0.95411 0.95967 0.98831 1.18024 0.93167 0.92404 0.99927 1.66928 1.11173 1.28094 1.21161 1.20090 0.87321 0.90004 0.89921 1.44030 1.26907 1.07026 1.56160 1.22163 0.89056 0.90265 0.92460 1.25228 0.97502 1.00768 1.01070 1.88801 1.22316 1.46409 1.50089 1.24880 1.01271 0.99848 0.98377 0.90332 0.84840 0.87434 0.88024 0.87874 0.87314 0.75295 0.85080 0.87880 0.88449 0.88305 0.87722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.35 10.84 55.55 0.60 -17.75 16 2 C 0.07 1.62 5.23 -17.31 -0.09 1.53 16 3 Si 0.91 16.69 29.58 -169.99 -5.03 11.66 16 4 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 5 H -0.28 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.26 -4.73 7.11 56.52 0.40 -4.32 16 7 C -0.44 -10.04 8.60 -37.89 -0.33 -10.37 16 8 H 0.08 1.63 6.76 -52.48 -0.35 1.27 16 9 C 0.05 1.09 5.74 -104.67 -0.60 0.49 16 10 C -0.18 -4.53 8.54 -38.07 -0.32 -4.85 16 11 C -0.06 -1.54 5.74 -106.77 -0.61 -2.15 16 12 C -0.12 -2.50 9.75 -39.35 -0.38 -2.88 16 13 C -0.14 -2.59 9.96 -39.94 -0.40 -2.99 16 14 C -0.16 -3.04 9.95 -39.90 -0.40 -3.44 16 15 C -0.09 -1.77 9.94 -39.46 -0.39 -2.16 16 16 C 0.08 1.91 6.60 -84.69 -0.56 1.35 16 17 N -0.55 -12.50 9.01 -8.56 -0.08 -12.58 16 18 C 0.38 8.32 7.67 -153.67 -1.18 7.14 16 19 N -0.70 -12.28 5.39 -62.33 -0.34 -12.62 16 20 C 0.17 2.54 3.90 -67.88 -0.26 2.27 16 21 C -0.10 -1.34 7.76 37.18 0.29 -1.05 16 22 S -0.30 -4.14 24.80 -107.50 -2.67 -6.81 16 23 C -0.09 -1.16 7.69 37.18 0.29 -0.87 16 24 H 0.29 6.17 8.30 -40.82 -0.34 5.83 16 25 H 0.13 3.40 6.15 -52.49 -0.32 3.08 16 26 H 0.11 2.09 8.06 -52.49 -0.42 1.67 16 27 H 0.10 1.59 8.06 -52.48 -0.42 1.17 16 28 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 29 H 0.11 2.02 8.06 -52.48 -0.42 1.60 16 30 H 0.41 6.60 7.06 -40.82 -0.29 6.31 16 31 H 0.13 2.17 7.41 -51.93 -0.38 1.78 16 32 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 308.47 15.07 4.65 4.65 Total: -1.00 -25.84 308.47 -11.68 -37.52 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -3.87 Total: 13.90 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -4.95 Total: -17.97 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.19 Total: -42.95 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -5.03 Total: 11.66 kcal Atomic # 16 Polarization: -4.14 SS G_CDS: -2.67 Total: -6.81 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -25.84 -11.68 -37.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168362025.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.193 kcal (2) G-P(sol) polarization free energy of solvation -25.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds