Wall clock time and date at job start Tue Mar 31 2020 05:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30784 * 1 3 3 Si 1.86800 * 120.00106 * 2 1 4 4 H 1.48496 * 109.47177 * 239.99962 * 3 2 1 5 5 H 1.48498 * 109.47137 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46782 * 120.00135 * 3 2 1 7 7 C 1.40071 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99957 * 194.45730 * 7 2 1 9 9 C 1.40896 * 119.99943 * 14.45331 * 7 2 1 10 10 C 1.40275 * 120.69760 * 25.22083 * 9 7 2 11 11 C 1.40234 * 118.13456 * 180.22620 * 10 9 7 12 12 C 1.40845 * 120.56803 * 179.18973 * 11 10 9 13 13 C 1.36142 * 119.70287 * 179.97438 * 12 11 10 14 14 C 1.39292 * 120.77199 * 0.02562 * 13 12 11 15 15 C 1.36278 * 121.07127 * 0.02562 * 14 13 12 16 16 C 1.40436 * 119.96964 * 0.25715 * 15 14 13 17 17 N 1.34029 * 120.12870 * 179.70105 * 16 15 14 18 18 C 1.31362 * 121.97559 * 180.02562 * 17 16 15 19 19 N 1.38076 * 119.77003 * 179.97438 * 18 17 16 20 20 C 1.46507 * 120.00240 * 0.02562 * 19 18 17 21 21 C 1.53046 * 113.14998 * 255.54946 * 20 19 18 22 22 S 1.81493 * 89.86068 * 211.86307 * 21 20 19 23 23 C 1.53039 * 113.15335 * 155.11589 * 20 19 18 24 24 H 0.97004 * 119.99911 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.92942 * 359.40805 * 10 9 7 26 26 H 1.07996 * 120.15195 * 0.02562 * 12 11 10 27 27 H 1.08004 * 119.60916 * 180.02562 * 13 12 11 28 28 H 1.07999 * 119.46784 * 179.97438 * 14 13 12 29 29 H 1.08007 * 120.01805 * 179.97438 * 15 14 13 30 30 H 0.97005 * 120.00416 * 179.97438 * 19 18 17 31 31 H 1.09003 * 112.49324 * 25.32743 * 20 19 18 32 32 H 1.08997 * 113.14843 * 327.10723 * 21 20 19 33 33 H 1.09003 * 113.14705 * 96.58949 * 21 20 19 34 34 H 1.08993 * 113.14900 * 263.40828 * 23 20 19 35 35 H 1.08998 * 113.15046 * 32.85232 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 3.0956 1.6964 -1.2125 5 1 1.2769 2.7464 0.0006 6 1 3.0956 1.6963 1.2125 7 6 2.0082 -1.2131 -0.0005 8 1 3.0626 -1.2280 0.2330 9 6 1.3371 -2.4138 -0.3056 10 6 0.1771 -2.4054 -1.0943 11 6 -0.4503 -3.6309 -1.3607 12 6 -1.6274 -3.6802 -2.1326 13 6 -2.2216 -4.8797 -2.3808 14 6 -1.6794 -6.0608 -1.8797 15 6 -0.5425 -6.0496 -1.1285 16 6 0.0986 -4.8329 -0.8441 17 7 1.2136 -4.8176 -0.1006 18 6 1.8421 -3.7008 0.1879 19 7 2.9873 -3.7379 0.9584 20 6 3.4978 -5.0198 1.4508 21 6 3.2189 -5.2471 2.9383 22 16 4.7581 -6.1988 3.0769 23 6 5.0008 -4.9987 1.7381 24 1 -0.4850 0.8401 0.0004 25 1 -0.2290 -1.4796 -1.4745 26 1 -2.0562 -2.7706 -2.5265 27 1 -3.1239 -4.9157 -2.9733 28 1 -2.1684 -7.0007 -2.0892 29 1 -0.1370 -6.9757 -0.7481 30 1 3.4543 -2.9152 1.1731 31 1 3.1928 -5.8583 0.8246 32 1 3.2303 -4.3266 3.5220 33 1 2.3265 -5.8459 3.1204 34 1 5.5998 -5.3895 0.9156 35 1 5.3563 -4.0300 2.0893 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168362025.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:38 Heat of formation + Delta-G solvation = 54.831216 kcal Electronic energy + Delta-G solvation = -19618.575075 eV Core-core repulsion = 16707.058170 eV Total energy + Delta-G solvation = -2911.516905 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.87422 -38.96518 -37.19370 -35.77615 -33.40427 -33.21397 -30.90134 -29.51334 -27.30328 -27.19983 -24.27387 -23.42871 -22.63217 -21.77062 -19.86340 -18.65400 -18.14545 -17.44532 -17.11681 -16.42099 -16.17280 -15.97425 -15.23305 -15.03954 -14.80012 -14.56567 -14.16261 -14.07213 -13.89538 -13.52435 -13.32386 -13.02056 -12.87976 -12.67198 -12.53786 -12.25840 -11.99415 -11.88450 -11.62196 -11.44420 -11.21576 -10.58541 -10.38041 -9.97154 -8.97699 -8.85922 -8.65849 -8.28613 -6.24720 0.14149 0.53700 0.78166 0.86509 1.39940 1.44520 1.53436 1.75537 2.18175 2.36111 2.51861 3.03406 3.45761 3.78874 3.90155 3.92804 4.06705 4.23824 4.34681 4.35829 4.47196 4.52248 4.69025 4.69739 4.78307 4.84166 5.01930 5.12014 5.27349 5.45707 5.61062 5.72110 5.86437 5.97027 6.04607 6.29119 6.31041 6.63874 6.70318 6.79537 6.94791 7.72031 8.28349 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.009812 B = 0.007467 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2853.097489 B = 3748.846342 C = 6396.017950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.032 3.968 3 Si 0.984 3.016 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.251 1.251 7 C -0.458 4.458 8 H 0.097 0.903 9 C 0.020 3.980 10 C -0.215 4.215 11 C -0.092 4.092 12 C -0.141 4.141 13 C -0.129 4.129 14 C -0.152 4.152 15 C -0.101 4.101 16 C 0.056 3.944 17 N -0.563 5.563 18 C 0.376 3.624 19 N -0.692 5.692 20 C 0.165 3.835 21 C -0.091 4.091 22 S -0.307 6.307 23 C -0.077 4.077 24 H 0.289 0.711 25 H 0.114 0.886 26 H 0.111 0.889 27 H 0.140 0.860 28 H 0.144 0.856 29 H 0.124 0.876 30 H 0.415 0.585 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.719 -3.418 1.202 5.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.184 4.184 3 Si 0.805 3.195 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.175 1.175 7 C -0.487 4.487 8 H 0.115 0.885 9 C 0.013 3.987 10 C -0.241 4.241 11 C -0.095 4.095 12 C -0.160 4.160 13 C -0.147 4.147 14 C -0.171 4.171 15 C -0.120 4.120 16 C -0.061 4.061 17 N -0.283 5.283 18 C 0.121 3.879 19 N -0.329 5.329 20 C 0.056 3.944 21 C -0.241 4.241 22 S -0.083 6.083 23 C -0.226 4.226 24 H 0.100 0.900 25 H 0.132 0.868 26 H 0.129 0.871 27 H 0.157 0.843 28 H 0.162 0.838 29 H 0.142 0.858 30 H 0.254 0.746 31 H 0.133 0.867 32 H 0.130 0.870 33 H 0.106 0.894 34 H 0.131 0.869 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.397 -5.339 2.239 7.915 hybrid contribution -0.668 2.768 -0.619 2.914 sum 4.729 -2.571 1.620 5.621 Atomic orbital electron populations 1.69863 1.09306 1.30792 1.33835 1.26801 0.95419 1.04613 0.91607 0.85197 0.78637 0.75345 0.80345 1.18501 1.20116 1.17519 1.19625 0.97371 0.90832 1.40916 0.88481 1.19289 0.94820 0.91495 0.93056 1.21283 1.01483 0.95511 1.05841 1.18927 0.96887 0.94272 0.99438 1.21035 0.95710 0.98472 1.00765 1.20891 1.00618 0.92039 1.01167 1.20801 0.96883 0.98792 1.00669 1.20692 0.96226 0.95522 0.99593 1.18509 0.93834 0.93328 1.00474 1.67019 1.11456 1.28075 1.21757 1.20226 0.88301 0.89298 0.90073 1.44020 1.25491 1.08382 1.55048 1.22237 0.91109 0.88489 0.92519 1.25134 0.97512 1.01132 1.00354 1.88884 1.21752 1.46989 1.50650 1.24816 0.99115 1.00493 0.98189 0.90009 0.86831 0.87093 0.84266 0.83810 0.85827 0.74559 0.86736 0.87011 0.89366 0.86886 0.85644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.84 10.84 21.85 0.24 -39.60 16 2 C 0.03 1.45 5.23 85.29 0.45 1.90 16 3 Si 0.98 34.03 29.58 68.60 2.03 36.06 16 4 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 5 H -0.28 -9.45 7.11 99.48 0.71 -8.75 16 6 H -0.25 -8.13 7.11 99.48 0.71 -7.42 16 7 C -0.46 -21.24 8.60 23.37 0.20 -21.04 16 8 H 0.10 3.96 6.76 -2.91 -0.02 3.94 16 9 C 0.02 1.00 5.74 -19.89 -0.11 0.89 16 10 C -0.22 -11.25 8.54 23.25 0.20 -11.05 16 11 C -0.09 -4.51 5.74 -21.26 -0.12 -4.63 16 12 C -0.14 -5.98 9.75 22.42 0.22 -5.76 16 13 C -0.13 -4.55 9.96 22.04 0.22 -4.33 16 14 C -0.15 -5.22 9.95 22.07 0.22 -5.00 16 15 C -0.10 -4.01 9.94 22.35 0.22 -3.79 16 16 C 0.06 2.62 6.60 40.24 0.27 2.89 16 17 N -0.56 -25.89 9.01 -180.99 -1.63 -27.52 16 18 C 0.38 16.84 7.67 135.71 1.04 17.88 16 19 N -0.69 -23.92 5.39 -351.12 -1.89 -25.82 16 20 C 0.17 4.79 3.90 45.02 0.18 4.96 16 21 C -0.09 -2.47 7.76 72.00 0.56 -1.91 16 22 S -0.31 -7.95 24.80 -56.49 -1.40 -9.35 16 23 C -0.08 -1.72 7.69 72.00 0.55 -1.17 16 24 H 0.29 12.95 8.30 -92.71 -0.77 12.18 16 25 H 0.11 6.22 6.15 -2.91 -0.02 6.20 16 26 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 27 H 0.14 3.85 8.06 -2.91 -0.02 3.82 16 28 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 29 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 30 H 0.42 13.03 7.06 -92.70 -0.65 12.38 16 31 H 0.11 3.77 7.41 -2.39 -0.02 3.75 16 32 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 33 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -57.87 308.47 1.90 -55.97 By element: Atomic # 1 Polarization: 39.96 SS G_CDS: 0.47 Total: 40.44 kcal Atomic # 6 Polarization: -34.25 SS G_CDS: 4.08 Total: -30.16 kcal Atomic # 7 Polarization: -89.66 SS G_CDS: -3.29 Total: -92.94 kcal Atomic # 14 Polarization: 34.03 SS G_CDS: 2.03 Total: 36.06 kcal Atomic # 16 Polarization: -7.95 SS G_CDS: -1.40 Total: -9.35 kcal Total: -57.87 1.90 -55.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168362025.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.801 kcal (2) G-P(sol) polarization free energy of solvation -57.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds