Wall clock time and date at job start Tue Mar 31 2020 05:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00419 * 2 1 4 4 H 1.48499 * 109.47241 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47159 * 300.00697 * 3 2 1 6 6 H 1.48501 * 109.46921 * 60.00300 * 3 2 1 7 7 C 1.37878 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00296 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99716 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46743 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46987 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.47202 * 179.97438 * 11 10 9 13 13 C 1.39667 * 119.99799 * 179.97438 * 12 11 10 14 14 C 1.38909 * 120.05160 * 359.97438 * 13 12 11 15 15 C 1.38304 * 119.94914 * 180.02562 * 14 13 12 16 16 F 1.35110 * 119.97462 * 179.97438 * 15 14 13 17 17 C 1.38498 * 120.05444 * 0.02562 * 15 14 13 18 18 C 1.38459 * 120.09464 * 359.73678 * 17 15 14 19 19 F 1.35097 * 119.97667 * 180.27671 * 18 17 15 20 20 C 1.38362 * 120.04830 * 0.51753 * 18 17 15 21 21 N 1.48016 * 120.02697 * 179.76923 * 20 18 17 22 22 O 1.21799 * 119.99786 * 269.72078 * 21 20 18 23 23 O 1.21796 * 119.99956 * 89.71863 * 21 20 18 24 24 H 0.97004 * 120.00129 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47561 * 60.00428 * 9 7 2 26 26 H 1.08993 * 109.47358 * 299.99404 * 9 7 2 27 27 H 1.08996 * 109.47158 * 60.00014 * 10 9 7 28 28 H 1.08994 * 109.47380 * 299.99678 * 10 9 7 29 29 H 1.09010 * 109.47025 * 60.00061 * 11 10 9 30 30 H 1.08999 * 109.47274 * 300.00546 * 11 10 9 31 31 H 0.96992 * 119.99918 * 0.02562 * 12 11 10 32 32 H 1.08003 * 120.02096 * 359.97438 * 14 13 12 33 33 H 1.08002 * 119.95565 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0018 11 6 1.4799 -4.9871 -0.0012 12 7 2.4319 -6.1007 -0.0030 13 6 1.9662 -7.4175 -0.0023 14 6 0.6007 -7.6724 0.0007 15 6 0.1419 -8.9771 0.0020 16 9 -1.1862 -9.2256 0.0055 17 6 1.0426 -10.0291 0.0008 18 6 2.4041 -9.7774 -0.0072 19 9 3.2806 -10.8054 -0.0140 20 6 2.8677 -8.4738 -0.0032 21 7 4.3233 -8.2052 -0.0066 22 8 4.9244 -8.0941 1.0469 23 8 4.9198 -8.0954 -1.0627 24 1 -0.4850 0.8401 0.0004 25 1 0.6238 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8723 -3.6049 0.8877 28 1 2.8709 -3.6041 -0.8922 29 1 0.8522 -5.0447 -0.8906 30 1 0.8542 -5.0450 0.8894 31 1 3.3855 -5.9236 -0.0040 32 1 -0.1021 -6.8523 0.0029 33 1 0.6826 -11.0474 0.0022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168430701.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:07 Heat of formation + Delta-G solvation = -76.909204 kcal Electronic energy + Delta-G solvation = -21702.959587 eV Core-core repulsion = 17788.747588 eV Total energy + Delta-G solvation = -3914.211999 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.82707 -49.58128 -42.36010 -39.82664 -36.65987 -36.61049 -33.92200 -32.18196 -31.57912 -29.80232 -26.98776 -26.29218 -24.07543 -22.96335 -22.33897 -20.79913 -19.61693 -18.97245 -18.87063 -18.54243 -16.98127 -16.66500 -16.59616 -16.21690 -16.08608 -15.93188 -15.53919 -15.27433 -14.95096 -14.51286 -13.98474 -13.42120 -13.18586 -12.58114 -12.31860 -12.13822 -12.03208 -11.79433 -11.36041 -11.28544 -11.06101 -10.97665 -10.65595 -10.62957 -10.02242 -9.68071 -9.67871 -9.28046 -8.50100 -8.33107 -6.14741 -4.18133 0.03870 0.29738 0.50802 1.10137 2.53168 2.59252 3.23354 3.27452 3.31589 3.35595 3.50411 4.02883 4.26731 4.34791 4.38281 4.84391 4.94337 5.05293 5.20578 5.21751 5.30759 5.40724 5.69950 5.85157 6.03014 6.24937 6.26070 6.62245 6.69708 6.97689 7.37484 7.44214 7.53792 7.82464 8.22738 8.87979 9.47436 10.96502 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.021485 B = 0.003464 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.942629 B = 8081.571837 C = 9240.521636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.026 3.974 10 C -0.124 4.124 11 C 0.109 3.891 12 N -0.714 5.714 13 C 0.324 3.676 14 C -0.235 4.235 15 C 0.218 3.782 16 F -0.114 7.114 17 C -0.249 4.249 18 C 0.228 3.772 19 F -0.114 7.114 20 C -0.172 4.172 21 N 0.024 4.976 22 O -0.131 6.131 23 O -0.132 6.132 24 H 0.262 0.738 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.407 0.593 32 H 0.166 0.834 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.394 -20.036 0.003 20.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.011 4.011 10 C -0.162 4.162 11 C -0.013 4.013 12 N -0.335 5.335 13 C 0.209 3.791 14 C -0.260 4.260 15 C 0.197 3.803 16 F -0.092 7.092 17 C -0.271 4.271 18 C 0.206 3.794 19 F -0.092 7.092 20 C -0.260 4.260 21 N 0.555 4.445 22 O -0.355 6.355 23 O -0.355 6.355 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.242 0.758 32 H 0.184 0.816 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.674 -19.857 0.003 19.869 hybrid contribution 1.070 0.801 -0.004 1.336 sum 0.396 -19.057 -0.001 19.061 Atomic orbital electron populations 1.69956 1.06090 1.26798 1.50416 1.25012 0.94880 0.99424 0.94999 0.86500 0.80130 0.83498 0.77701 1.19658 1.20897 1.20892 1.21201 0.93131 0.90760 1.51258 0.92484 1.19030 0.93655 0.90758 0.97689 1.21936 1.00059 0.92548 1.01620 1.22076 0.91950 0.85127 1.02168 1.45556 1.10770 1.01933 1.75239 1.16728 0.90757 0.83953 0.87662 1.20629 0.93439 0.97194 1.14701 1.16951 0.77707 0.92192 0.93410 1.91603 1.30109 1.94931 1.92596 1.20631 0.89475 1.01466 1.15558 1.16289 0.87031 0.80650 0.95382 1.91618 1.68015 1.56758 1.92848 1.20209 0.80500 0.94111 1.31142 1.43145 1.02528 0.98303 1.00495 1.94590 1.68132 1.51904 1.20862 1.94590 1.68517 1.51929 1.20472 0.92863 0.96160 0.96152 0.92255 0.92246 0.90817 0.90809 0.75766 0.81637 0.81786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.53 -14.08 9.11 -34.44 -0.31 -14.39 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.61 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.21 5.27 -26.73 -0.14 -2.35 16 11 C 0.11 1.51 4.91 -4.04 -0.02 1.49 16 12 N -0.71 -9.21 5.72 -58.64 -0.34 -9.55 16 13 C 0.32 3.85 6.65 -83.81 -0.56 3.29 16 14 C -0.24 -2.37 9.29 -39.31 -0.37 -2.74 16 15 C 0.22 1.98 7.29 -39.46 -0.29 1.69 16 16 F -0.11 -1.03 17.27 2.25 0.04 -0.99 16 17 C -0.25 -2.14 10.00 -39.40 -0.39 -2.53 16 18 C 0.23 2.47 7.29 -39.45 -0.29 2.18 16 19 F -0.11 -1.31 17.09 2.25 0.04 -1.27 16 20 C -0.17 -2.15 6.18 -79.67 -0.49 -2.64 16 21 N 0.02 0.34 3.31 34.10 0.11 0.46 16 22 O -0.13 -1.98 19.25 -29.46 -0.57 -2.55 16 23 O -0.13 -1.98 19.25 -29.46 -0.57 -2.55 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 0.97 7.95 -51.92 -0.41 0.56 16 30 H 0.07 0.97 7.95 -51.93 -0.41 0.56 16 31 H 0.41 5.42 7.72 -40.82 -0.32 5.11 16 32 H 0.17 1.52 6.73 -52.48 -0.35 1.16 16 33 H 0.16 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 309.48 15.07 4.66 4.66 Total: -1.00 -28.62 309.48 -7.14 -35.76 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -3.15 Total: -0.96 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -3.09 Total: -14.00 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.51 Total: -34.02 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: -1.13 Total: -5.09 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.08 Total: -2.26 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.62 -7.14 -35.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168430701.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.148 kcal (2) G-P(sol) polarization free energy of solvation -28.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds