Wall clock time and date at job start Tue Mar 31 2020 05:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00419 * 2 1 4 4 H 1.48499 * 109.47241 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47159 * 300.00697 * 3 2 1 6 6 H 1.48501 * 109.46921 * 60.00300 * 3 2 1 7 7 C 1.37878 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00296 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99716 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46743 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46987 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.47202 * 179.97438 * 11 10 9 13 13 C 1.39667 * 119.99799 * 179.97438 * 12 11 10 14 14 C 1.38909 * 120.05160 * 359.97438 * 13 12 11 15 15 C 1.38304 * 119.94914 * 180.02562 * 14 13 12 16 16 F 1.35110 * 119.97462 * 179.97438 * 15 14 13 17 17 C 1.38498 * 120.05444 * 0.02562 * 15 14 13 18 18 C 1.38459 * 120.09464 * 359.73678 * 17 15 14 19 19 F 1.35097 * 119.97667 * 180.27671 * 18 17 15 20 20 C 1.38362 * 120.04830 * 0.51753 * 18 17 15 21 21 N 1.48016 * 120.02697 * 179.76923 * 20 18 17 22 22 O 1.21799 * 119.99786 * 269.72078 * 21 20 18 23 23 O 1.21796 * 119.99956 * 89.71863 * 21 20 18 24 24 H 0.97004 * 120.00129 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47561 * 60.00428 * 9 7 2 26 26 H 1.08993 * 109.47358 * 299.99404 * 9 7 2 27 27 H 1.08996 * 109.47158 * 60.00014 * 10 9 7 28 28 H 1.08994 * 109.47380 * 299.99678 * 10 9 7 29 29 H 1.09010 * 109.47025 * 60.00061 * 11 10 9 30 30 H 1.08999 * 109.47274 * 300.00546 * 11 10 9 31 31 H 0.96992 * 119.99918 * 0.02562 * 12 11 10 32 32 H 1.08003 * 120.02096 * 359.97438 * 14 13 12 33 33 H 1.08002 * 119.95565 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0018 11 6 1.4799 -4.9871 -0.0012 12 7 2.4319 -6.1007 -0.0030 13 6 1.9662 -7.4175 -0.0023 14 6 0.6007 -7.6724 0.0007 15 6 0.1419 -8.9771 0.0020 16 9 -1.1862 -9.2256 0.0055 17 6 1.0426 -10.0291 0.0008 18 6 2.4041 -9.7774 -0.0072 19 9 3.2806 -10.8054 -0.0140 20 6 2.8677 -8.4738 -0.0032 21 7 4.3233 -8.2052 -0.0066 22 8 4.9244 -8.0941 1.0469 23 8 4.9198 -8.0954 -1.0627 24 1 -0.4850 0.8401 0.0004 25 1 0.6238 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8723 -3.6049 0.8877 28 1 2.8709 -3.6041 -0.8922 29 1 0.8522 -5.0447 -0.8906 30 1 0.8542 -5.0450 0.8894 31 1 3.3855 -5.9236 -0.0040 32 1 -0.1021 -6.8523 0.0029 33 1 0.6826 -11.0474 0.0022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168430701.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:06 Heat of formation + Delta-G solvation = -91.840945 kcal Electronic energy + Delta-G solvation = -21703.607076 eV Core-core repulsion = 17788.747588 eV Total energy + Delta-G solvation = -3914.859488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.68264 -50.32332 -43.43187 -40.73850 -37.78232 -37.71341 -35.61190 -33.65844 -32.65858 -30.91334 -28.48235 -27.34397 -25.52034 -23.93465 -23.48270 -22.28324 -20.63418 -20.07450 -19.78708 -19.49397 -18.52245 -17.88854 -17.49559 -17.23215 -16.91664 -16.72131 -16.65527 -16.49302 -16.36519 -15.74723 -14.95262 -14.62497 -14.35539 -14.00176 -13.76855 -13.44939 -13.20541 -12.95723 -12.81536 -12.60114 -12.47430 -12.44717 -12.39199 -11.90654 -11.55150 -11.35563 -11.23873 -10.58075 -10.52136 -9.24895 -8.23595 -6.33511 -0.85043 -0.81353 -0.30267 0.09912 1.38854 1.40665 1.52059 1.57710 1.77555 2.38645 2.42887 2.67252 3.11137 3.17998 3.44120 3.57156 3.86223 4.03581 4.08592 4.22669 4.25378 4.43246 4.69231 4.78624 4.82704 4.92593 5.06052 5.18010 5.45794 5.55268 5.65935 5.80199 5.92412 6.20477 6.21103 6.82705 7.36155 8.87979 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.021485 B = 0.003464 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.942629 B = 8081.571837 C = 9240.521636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.959 3.041 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.029 3.971 10 C -0.111 4.111 11 C 0.124 3.876 12 N -0.721 5.721 13 C 0.315 3.685 14 C -0.230 4.230 15 C 0.228 3.772 16 F -0.109 7.109 17 C -0.222 4.222 18 C 0.218 3.782 19 F -0.119 7.119 20 C -0.183 4.183 21 N 0.026 4.974 22 O -0.147 6.147 23 O -0.147 6.147 24 H 0.264 0.736 25 H 0.003 0.997 26 H 0.003 0.997 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.403 0.597 32 H 0.176 0.824 33 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.089 -21.078 0.007 21.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.584 4.584 8 H 0.075 0.925 9 C -0.009 4.009 10 C -0.149 4.149 11 C 0.002 3.998 12 N -0.343 5.343 13 C 0.202 3.798 14 C -0.254 4.254 15 C 0.207 3.793 16 F -0.087 7.087 17 C -0.244 4.244 18 C 0.197 3.803 19 F -0.097 7.097 20 C -0.271 4.271 21 N 0.555 4.445 22 O -0.369 6.369 23 O -0.369 6.369 24 H 0.073 0.927 25 H 0.021 0.979 26 H 0.021 0.979 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.238 0.762 32 H 0.194 0.806 33 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -1.147 -20.930 0.007 20.962 hybrid contribution 1.143 1.032 -0.005 1.539 sum -0.005 -19.898 0.003 19.898 Atomic orbital electron populations 1.70061 1.07533 1.27762 1.51503 1.25868 0.95733 1.03050 0.94730 0.85481 0.79063 0.79221 0.77799 1.18924 1.20420 1.20408 1.21685 0.93502 0.92467 1.50718 0.92481 1.18902 0.94137 0.91969 0.95898 1.21632 0.98892 0.92846 1.01486 1.21754 0.91422 0.83565 1.03100 1.45312 1.10255 1.02150 1.76606 1.16773 0.91287 0.83161 0.88578 1.20774 0.92701 0.98186 1.13767 1.16886 0.77916 0.91841 0.92659 1.91631 1.29773 1.94841 1.92411 1.20908 0.88108 1.02865 1.12490 1.16427 0.87761 0.79874 0.96266 1.91610 1.68371 1.56749 1.92985 1.20395 0.78965 0.95156 1.32595 1.43416 1.03431 0.97619 1.00071 1.94575 1.68994 1.52348 1.20981 1.94574 1.69375 1.52380 1.20597 0.92694 0.97880 0.97868 0.92397 0.92392 0.89937 0.89924 0.76218 0.80624 0.78659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.87 13.29 21.45 0.28 -53.58 16 2 C 0.00 0.25 5.46 84.66 0.46 0.71 16 3 Si 0.96 42.91 29.54 68.60 2.03 44.94 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 7 C -0.55 -29.47 9.11 25.60 0.23 -29.24 16 8 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 9 C 0.03 1.36 4.97 29.85 0.15 1.51 16 10 C -0.11 -3.93 5.27 30.60 0.16 -3.77 16 11 C 0.12 3.31 4.91 86.38 0.42 3.74 16 12 N -0.72 -17.98 5.72 -339.44 -1.94 -19.92 16 13 C 0.32 7.03 6.65 38.20 0.25 7.28 16 14 C -0.23 -4.08 9.29 22.45 0.21 -3.87 16 15 C 0.23 3.40 7.29 22.35 0.16 3.56 16 16 F -0.11 -1.58 17.27 44.97 0.78 -0.81 16 17 C -0.22 -3.06 10.00 22.38 0.22 -2.83 16 18 C 0.22 4.29 7.29 22.35 0.16 4.45 16 19 F -0.12 -2.54 17.09 44.97 0.77 -1.77 16 20 C -0.18 -4.38 6.18 36.56 0.23 -4.15 16 21 N 0.03 0.73 3.31 -46.03 -0.15 0.58 16 22 O -0.15 -4.43 19.25 18.89 0.36 -4.07 16 23 O -0.15 -4.44 19.25 18.89 0.36 -4.08 16 24 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 25 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 26 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 27 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.08 2.07 7.95 -2.38 -0.02 2.05 16 30 H 0.08 2.07 7.95 -2.39 -0.02 2.05 16 31 H 0.40 10.64 7.72 -92.71 -0.72 9.92 16 32 H 0.18 2.77 6.73 -2.91 -0.02 2.75 16 33 H 0.20 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -61.42 309.48 5.61 -55.81 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: 0.45 Total: 5.52 kcal Atomic # 6 Polarization: -25.28 SS G_CDS: 2.67 Total: -22.61 kcal Atomic # 7 Polarization: -71.12 SS G_CDS: -1.81 Total: -72.93 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.73 Total: -8.15 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 1.55 Total: -2.57 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -61.42 5.61 -55.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168430701.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.033 kcal (2) G-P(sol) polarization free energy of solvation -61.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds