Wall clock time and date at job start Tue Mar 31 2020 06:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35623 * 116.99651 * 2 1 4 4 C 1.39155 * 120.50301 * 0.02562 * 3 2 1 5 5 C 1.38312 * 118.62912 * 179.72733 * 4 3 2 6 6 C 1.39935 * 119.59028 * 0.48053 * 5 4 3 7 7 N 1.38912 * 119.49516 * 179.78771 * 6 5 4 8 8 C 1.46498 * 119.99634 * 0.02562 * 7 6 5 9 9 C 1.52996 * 109.47059 * 179.72466 * 8 7 6 10 10 H 1.09000 * 109.47665 * 59.99541 * 9 8 7 11 11 O 1.42907 * 109.46877 * 299.99566 * 9 8 7 12 12 C 1.53003 * 109.47301 * 179.97438 * 9 8 7 13 13 Cl 1.80297 * 109.47180 * 184.99785 * 12 9 8 14 14 N 1.31873 * 121.01287 * 359.50832 * 6 5 4 15 15 C 1.33822 * 121.46762 * 0.26217 * 14 6 5 16 16 C 1.40920 * 119.84651 * 180.02562 * 15 14 6 17 17 H 1.08000 * 119.99668 * 179.97438 * 16 15 14 18 18 C 1.40020 * 120.00000 * 359.97438 * 16 15 14 19 19 N 1.30787 * 119.99962 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00210 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46839 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47669 * 120.00118 * 20 18 16 23 23 H 1.48503 * 109.47536 * 240.00158 * 20 18 16 24 24 H 1.09002 * 109.47467 * 299.99524 * 1 2 3 25 25 H 1.08995 * 109.47904 * 59.99929 * 1 2 3 26 26 H 1.09003 * 109.46977 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.68616 * 359.97438 * 4 3 2 28 28 H 1.08002 * 120.20212 * 180.26813 * 5 4 3 29 29 H 0.97001 * 119.99921 * 179.72211 * 7 6 5 30 30 H 1.09004 * 109.46963 * 299.72262 * 8 7 6 31 31 H 1.08994 * 109.47567 * 59.72414 * 8 7 6 32 32 H 0.96694 * 114.00447 * 299.99744 * 11 9 8 33 33 H 1.08992 * 109.47039 * 305.00167 * 12 9 8 34 34 H 1.09003 * 109.46940 * 65.00344 * 12 9 8 35 35 H 0.96998 * 119.99607 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2084 0.0000 4 6 1.2969 2.3821 0.0005 5 6 1.9648 3.5933 0.0063 6 6 3.3640 3.6109 0.0012 7 7 4.0326 4.8285 0.0025 8 6 3.2731 6.0812 0.0098 9 6 4.2422 7.2651 0.0167 10 1 4.8700 7.2260 -0.8734 11 8 5.0651 7.2002 1.1833 12 6 3.4490 8.5734 0.0236 13 17 4.5855 9.9661 -0.1163 14 7 4.0576 2.4893 0.0007 15 6 3.4543 1.2948 -0.0003 16 6 4.2291 0.1178 -0.0002 17 1 3.7447 -0.8475 -0.0006 18 6 5.6269 0.1997 0.0002 19 7 6.2134 1.3687 0.0011 20 14 6.6540 -1.3605 -0.0005 21 1 5.7567 -2.5438 -0.0009 22 1 7.5113 -1.3883 -1.2127 23 1 7.5106 -1.3899 1.2122 24 1 -0.3634 0.5138 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.2175 2.3479 0.0005 28 1 1.4097 4.5197 0.0112 29 1 5.0024 4.8492 0.0031 30 1 2.6454 6.1306 -0.8800 31 1 2.6453 6.1204 0.8999 32 1 4.5721 7.2303 2.0145 33 1 2.7569 8.5832 -0.8183 34 1 2.8889 8.6538 0.9553 35 1 7.1817 1.4254 0.0010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169640466.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:48 Heat of formation + Delta-G solvation = -58.234443 kcal Electronic energy + Delta-G solvation = -20152.393659 eV Core-core repulsion = 16790.788138 eV Total energy + Delta-G solvation = -3361.605521 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.91949 -38.16233 -36.73762 -35.90656 -34.43140 -33.10775 -30.96917 -30.28837 -28.70913 -26.51468 -25.56344 -24.71562 -22.17157 -21.23186 -20.37632 -17.50382 -16.96886 -16.46879 -16.34259 -16.18290 -15.04520 -14.92590 -14.62159 -14.43867 -13.90807 -13.76635 -13.48412 -12.89295 -12.81089 -12.66063 -12.31153 -11.96424 -11.58833 -11.41782 -11.19723 -11.18780 -10.85757 -10.60611 -10.56723 -10.43397 -10.42881 -10.01504 -9.77688 -9.46565 -8.47453 -8.01364 -7.66734 -6.36917 -6.29975 -4.35798 2.01734 2.81794 3.12207 3.14361 3.20139 3.27248 3.88171 4.00841 4.25324 4.54671 4.66108 4.73490 4.81808 4.88261 5.11756 5.27892 5.71434 5.79398 5.79876 5.91105 5.96930 6.03897 6.08536 6.36870 6.67160 6.80428 7.21070 7.28173 7.46146 7.53789 7.68066 8.21306 8.28768 8.43318 8.68981 8.80370 9.17481 10.18332 10.36170 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.017178 B = 0.004181 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.612664 B = 6694.796364 C = 8213.395928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.312 6.312 3 C -0.076 4.076 4 C -0.114 4.114 5 C -0.350 4.350 6 C 0.394 3.606 7 N -0.732 5.732 8 C 0.114 3.886 9 C 0.090 3.910 10 H 0.114 0.886 11 O -0.543 6.543 12 C -0.063 4.063 13 Cl -0.174 7.174 14 N -0.512 5.512 15 C 0.289 3.711 16 C -0.411 4.411 17 H 0.092 0.908 18 C 0.067 3.933 19 N -0.711 5.711 20 Si 0.907 3.093 21 H -0.259 1.259 22 H -0.274 1.274 23 H -0.274 1.274 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.402 0.598 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.375 0.625 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.379 9.835 0.459 11.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.225 6.225 3 C -0.123 4.123 4 C -0.139 4.139 5 C -0.377 4.377 6 C 0.156 3.844 7 N -0.371 5.371 8 C -0.013 4.013 9 C 0.029 3.971 10 H 0.132 0.868 11 O -0.348 6.348 12 C -0.127 4.127 13 Cl -0.148 7.148 14 N -0.235 5.235 15 C 0.160 3.840 16 C -0.443 4.443 17 H 0.110 0.890 18 C -0.158 4.158 19 N -0.333 5.333 20 Si 0.732 3.268 21 H -0.183 1.183 22 H -0.199 1.199 23 H -0.199 1.199 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.098 0.902 27 H 0.117 0.883 28 H 0.108 0.892 29 H 0.238 0.762 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.223 0.777 33 H 0.122 0.878 34 H 0.116 0.884 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.809 9.956 0.001 10.660 hybrid contribution -1.037 -0.217 0.354 1.117 sum -4.846 9.740 0.355 10.884 Atomic orbital electron populations 1.22682 0.82218 1.01509 0.99614 1.85925 1.17816 1.27900 1.90888 1.20041 0.93446 0.83107 1.15750 1.20656 0.97224 0.92388 1.03612 1.20310 0.92766 0.96229 1.28389 1.18456 0.87617 0.86655 0.91687 1.43836 1.08102 1.00787 1.84342 1.21613 0.93966 0.84342 1.01394 1.22419 0.92910 0.90714 0.91013 0.86791 1.86684 1.36345 1.96378 1.15405 1.25055 0.94071 0.87743 1.05857 1.98727 1.67453 1.49731 1.98874 1.68381 1.34695 0.94932 1.25451 1.17779 0.85006 0.91049 0.90144 1.19591 0.90552 0.93161 1.41041 0.89028 1.26092 0.98782 0.97175 0.93790 1.70175 1.10238 1.24448 1.28443 0.86267 0.79809 0.82318 0.78434 1.18283 1.19920 1.19916 0.94530 0.94518 0.90179 0.88326 0.89231 0.76249 0.92129 0.92742 0.77722 0.87801 0.88425 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 9.83 101.05 0.99 1.62 16 2 O -0.31 -7.29 9.61 -18.57 -0.18 -7.47 16 3 C -0.08 -1.93 6.74 -38.11 -0.26 -2.18 16 4 C -0.11 -2.61 9.12 -39.21 -0.36 -2.97 16 5 C -0.35 -7.86 9.33 -38.92 -0.36 -8.22 16 6 C 0.39 9.39 7.65 -155.25 -1.19 8.21 16 7 N -0.73 -14.08 5.62 -60.35 -0.34 -14.42 16 8 C 0.11 1.55 4.54 -4.04 -0.02 1.53 16 9 C 0.09 1.00 3.13 -26.73 -0.08 0.91 16 10 H 0.11 1.38 8.14 -51.93 -0.42 0.95 16 11 O -0.54 -6.76 12.92 -35.23 -0.46 -7.22 16 12 C -0.06 -0.53 6.31 37.16 0.23 -0.30 16 13 Cl -0.17 -1.85 29.00 -51.86 -1.50 -3.36 16 14 N -0.51 -14.01 7.88 -10.20 -0.08 -14.09 16 15 C 0.29 8.06 6.56 -84.85 -0.56 7.51 16 16 C -0.41 -11.30 8.94 -37.90 -0.34 -11.64 16 17 H 0.09 2.45 7.31 -52.49 -0.38 2.07 16 18 C 0.07 1.72 5.50 -17.33 -0.10 1.63 16 19 N -0.71 -18.88 11.45 55.55 0.64 -18.24 16 20 Si 0.91 18.94 29.56 -169.99 -5.02 13.91 16 21 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 24 H 0.04 0.59 7.69 -51.93 -0.40 0.19 16 25 H 0.04 0.59 7.69 -51.93 -0.40 0.19 16 26 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.10 1.95 6.43 -52.49 -0.34 1.61 16 28 H 0.09 1.74 6.67 -52.49 -0.35 1.39 16 29 H 0.40 8.09 8.47 -40.82 -0.35 7.74 16 30 H 0.06 0.80 7.93 -51.93 -0.41 0.39 16 31 H 0.05 0.70 7.90 -51.93 -0.41 0.29 16 32 H 0.38 3.51 9.05 45.56 0.41 3.93 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.27 6.52 8.29 -40.82 -0.34 6.18 16 LS Contribution 314.99 15.07 4.75 4.75 Total: -1.00 -31.57 314.99 -7.68 -39.25 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -3.45 Total: 10.81 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -2.03 Total: -3.92 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.22 Total: -46.76 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.63 Total: -14.68 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.91 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -1.50 Total: -3.36 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.57 -7.68 -39.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169640466.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.983 kcal (2) G-P(sol) polarization free energy of solvation -31.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds