Wall clock time and date at job start Tue Mar 31 2020 06:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35623 * 116.99651 * 2 1 4 4 C 1.39155 * 120.50301 * 0.02562 * 3 2 1 5 5 C 1.38312 * 118.62912 * 179.72733 * 4 3 2 6 6 C 1.39935 * 119.59028 * 0.48053 * 5 4 3 7 7 N 1.38912 * 119.49516 * 179.78771 * 6 5 4 8 8 C 1.46498 * 119.99634 * 0.02562 * 7 6 5 9 9 C 1.52996 * 109.47059 * 179.72466 * 8 7 6 10 10 H 1.09000 * 109.47665 * 59.99541 * 9 8 7 11 11 O 1.42907 * 109.46877 * 299.99566 * 9 8 7 12 12 C 1.53003 * 109.47301 * 179.97438 * 9 8 7 13 13 Cl 1.80297 * 109.47180 * 184.99785 * 12 9 8 14 14 N 1.31873 * 121.01287 * 359.50832 * 6 5 4 15 15 C 1.33822 * 121.46762 * 0.26217 * 14 6 5 16 16 C 1.40920 * 119.84651 * 180.02562 * 15 14 6 17 17 H 1.08000 * 119.99668 * 179.97438 * 16 15 14 18 18 C 1.40020 * 120.00000 * 359.97438 * 16 15 14 19 19 N 1.30787 * 119.99962 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00210 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46839 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47669 * 120.00118 * 20 18 16 23 23 H 1.48503 * 109.47536 * 240.00158 * 20 18 16 24 24 H 1.09002 * 109.47467 * 299.99524 * 1 2 3 25 25 H 1.08995 * 109.47904 * 59.99929 * 1 2 3 26 26 H 1.09003 * 109.46977 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.68616 * 359.97438 * 4 3 2 28 28 H 1.08002 * 120.20212 * 180.26813 * 5 4 3 29 29 H 0.97001 * 119.99921 * 179.72211 * 7 6 5 30 30 H 1.09004 * 109.46963 * 299.72262 * 8 7 6 31 31 H 1.08994 * 109.47567 * 59.72414 * 8 7 6 32 32 H 0.96694 * 114.00447 * 299.99744 * 11 9 8 33 33 H 1.08992 * 109.47039 * 305.00167 * 12 9 8 34 34 H 1.09003 * 109.46940 * 65.00344 * 12 9 8 35 35 H 0.96998 * 119.99607 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2084 0.0000 4 6 1.2969 2.3821 0.0005 5 6 1.9648 3.5933 0.0063 6 6 3.3640 3.6109 0.0012 7 7 4.0326 4.8285 0.0025 8 6 3.2731 6.0812 0.0098 9 6 4.2422 7.2651 0.0167 10 1 4.8700 7.2260 -0.8734 11 8 5.0651 7.2002 1.1833 12 6 3.4490 8.5734 0.0236 13 17 4.5855 9.9661 -0.1163 14 7 4.0576 2.4893 0.0007 15 6 3.4543 1.2948 -0.0003 16 6 4.2291 0.1178 -0.0002 17 1 3.7447 -0.8475 -0.0006 18 6 5.6269 0.1997 0.0002 19 7 6.2134 1.3687 0.0011 20 14 6.6540 -1.3605 -0.0005 21 1 5.7567 -2.5438 -0.0009 22 1 7.5113 -1.3883 -1.2127 23 1 7.5106 -1.3899 1.2122 24 1 -0.3634 0.5138 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.2175 2.3479 0.0005 28 1 1.4097 4.5197 0.0112 29 1 5.0024 4.8492 0.0031 30 1 2.6454 6.1306 -0.8800 31 1 2.6453 6.1204 0.8999 32 1 4.5721 7.2303 2.0145 33 1 2.7569 8.5832 -0.8183 34 1 2.8889 8.6538 0.9553 35 1 7.1817 1.4254 0.0010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169640466.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:48 Heat of formation + Delta-G solvation = -81.572052 kcal Electronic energy + Delta-G solvation = -20153.405653 eV Core-core repulsion = 16790.788138 eV Total energy + Delta-G solvation = -3362.617515 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.63530 -39.30922 -38.30809 -36.73636 -36.03876 -34.77962 -32.17996 -32.04388 -30.28812 -28.02041 -27.12894 -26.13003 -23.57336 -22.63249 -22.08677 -19.33690 -18.46693 -18.11157 -17.55190 -17.19033 -16.65452 -16.48670 -16.20070 -15.67580 -15.24173 -14.87311 -14.83163 -14.33042 -14.12646 -13.97879 -13.91794 -13.37572 -13.24133 -12.88049 -12.83662 -12.48000 -12.31798 -12.05488 -11.96351 -11.75089 -11.54229 -11.34896 -11.27250 -10.91489 -10.11395 -9.88556 -9.54601 -8.24152 -8.05004 -6.31199 1.00539 1.28310 1.29748 1.42625 1.56872 1.58107 2.27280 2.59634 2.92700 3.05561 3.43577 3.61837 3.90362 3.94241 4.00179 4.29234 4.36752 4.46942 4.51336 4.53570 4.59999 4.69414 4.77084 4.92982 4.95854 5.00330 5.34414 5.52647 5.74212 5.87830 6.28457 6.43674 6.71997 6.79458 6.86004 7.02111 7.35693 8.32435 8.50597 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.017178 B = 0.004181 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.612664 B = 6694.796364 C = 8213.395928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.339 6.339 3 C -0.100 4.100 4 C -0.112 4.112 5 C -0.342 4.342 6 C 0.373 3.627 7 N -0.730 5.730 8 C 0.111 3.889 9 C 0.100 3.900 10 H 0.101 0.899 11 O -0.564 6.564 12 C -0.053 4.053 13 Cl -0.193 7.193 14 N -0.545 5.545 15 C 0.252 3.748 16 C -0.452 4.452 17 H 0.083 0.917 18 C 0.025 3.975 19 N -0.749 5.749 20 Si 0.984 3.016 21 H -0.258 1.258 22 H -0.265 1.265 23 H -0.266 1.266 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.110 0.890 27 H 0.133 0.867 28 H 0.126 0.874 29 H 0.394 0.606 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.388 0.612 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.859 10.726 0.574 12.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.253 6.253 3 C -0.148 4.148 4 C -0.137 4.137 5 C -0.368 4.368 6 C 0.134 3.866 7 N -0.367 5.367 8 C -0.014 4.014 9 C 0.040 3.960 10 H 0.119 0.881 11 O -0.371 6.371 12 C -0.117 4.117 13 Cl -0.166 7.166 14 N -0.268 5.268 15 C 0.124 3.876 16 C -0.485 4.485 17 H 0.101 0.899 18 C -0.196 4.196 19 N -0.372 5.372 20 Si 0.804 3.196 21 H -0.182 1.182 22 H -0.190 1.190 23 H -0.190 1.190 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.128 0.872 27 H 0.151 0.849 28 H 0.143 0.857 29 H 0.228 0.772 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.238 0.762 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.325 10.903 0.123 12.134 hybrid contribution -0.756 -0.371 0.327 0.904 sum -6.082 10.531 0.450 12.169 Atomic orbital electron populations 1.23021 0.79110 1.03964 1.00601 1.85859 1.21060 1.27374 1.91041 1.20094 0.93203 0.84658 1.16823 1.21061 0.98923 0.91654 1.02060 1.20723 0.92406 0.97619 1.26036 1.18919 0.88770 0.87276 0.91589 1.44040 1.08029 1.01223 1.83359 1.21895 0.94324 0.82656 1.02515 1.22269 0.92312 0.91182 0.90268 0.88089 1.86661 1.37521 1.96474 1.16429 1.25089 0.93190 0.85227 1.08152 1.98732 1.68406 1.50552 1.98949 1.68312 1.36283 0.95864 1.26383 1.18200 0.86814 0.91614 0.91007 1.19765 0.91908 0.93028 1.43758 0.89900 1.26915 0.99287 1.00611 0.92803 1.70258 1.10734 1.26536 1.29632 0.85139 0.77820 0.77803 0.78808 1.18177 1.19017 1.19033 0.93372 0.93375 0.87216 0.84941 0.85657 0.77195 0.90923 0.91209 0.76246 0.85691 0.86071 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 9.83 113.37 1.11 2.04 16 2 O -0.34 -15.91 9.61 -89.35 -0.86 -16.77 16 3 C -0.10 -5.13 6.74 23.23 0.16 -4.98 16 4 C -0.11 -4.96 9.12 22.51 0.21 -4.76 16 5 C -0.34 -14.64 9.33 22.70 0.21 -14.43 16 6 C 0.37 17.75 7.65 133.45 1.02 18.77 16 7 N -0.73 -27.65 5.62 -344.86 -1.94 -29.58 16 8 C 0.11 2.75 4.54 86.38 0.39 3.14 16 9 C 0.10 2.02 3.13 30.59 0.10 2.12 16 10 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 11 O -0.56 -13.29 12.92 -148.98 -1.92 -15.22 16 12 C -0.05 -0.74 6.31 71.98 0.45 -0.28 16 13 Cl -0.19 -3.75 29.00 -2.72 -0.08 -3.83 16 14 N -0.54 -30.69 7.88 -186.17 -1.47 -32.16 16 15 C 0.25 14.60 6.56 40.23 0.26 14.86 16 16 C -0.45 -25.97 8.94 23.36 0.21 -25.76 16 17 H 0.08 4.68 7.31 -2.91 -0.02 4.66 16 18 C 0.03 1.35 5.50 85.28 0.47 1.81 16 19 N -0.75 -41.22 11.45 21.84 0.25 -40.97 16 20 Si 0.98 39.96 29.56 68.60 2.03 41.99 16 21 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 22 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 23 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 24 H 0.05 1.43 7.69 -2.39 -0.02 1.42 16 25 H 0.05 1.44 7.69 -2.39 -0.02 1.42 16 26 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 27 H 0.13 4.81 6.43 -2.91 -0.02 4.79 16 28 H 0.13 4.37 6.67 -2.91 -0.02 4.35 16 29 H 0.39 16.07 8.47 -92.71 -0.79 15.28 16 30 H 0.07 1.67 7.93 -2.38 -0.02 1.65 16 31 H 0.07 1.55 7.90 -2.39 -0.02 1.54 16 32 H 0.39 6.58 9.05 -74.06 -0.67 5.91 16 33 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.28 13.75 8.29 -92.71 -0.77 12.98 16 Total: -1.00 -71.56 314.99 0.29 -71.27 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: -0.31 Total: 32.74 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: 4.59 Total: -7.47 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -3.15 Total: -102.71 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -2.78 Total: -31.99 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Atomic # 17 Polarization: -3.75 SS G_CDS: -0.08 Total: -3.83 kcal Total: -71.56 0.29 -71.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169640466.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.298 kcal (2) G-P(sol) polarization free energy of solvation -71.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds