Wall clock time and date at job start Tue Mar 31 2020 06:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35620 * 116.99905 * 2 1 4 4 C 1.39151 * 120.50531 * 0.23806 * 3 2 1 5 5 C 1.38306 * 118.62672 * 180.26233 * 4 3 2 6 6 C 1.39942 * 119.59824 * 359.74602 * 5 4 3 7 7 N 1.38900 * 119.49723 * 179.97438 * 6 5 4 8 8 C 1.46502 * 120.00280 * 0.02562 * 7 6 5 9 9 C 1.52999 * 109.47045 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.46950 * 304.99475 * 9 8 7 11 11 O 1.42896 * 109.47366 * 65.00276 * 9 8 7 12 12 C 1.53003 * 109.46829 * 184.99923 * 9 8 7 13 13 Cl 1.80298 * 109.47020 * 174.99668 * 12 9 8 14 14 N 1.31865 * 121.00471 * 359.97438 * 6 5 4 15 15 C 1.33830 * 121.47224 * 0.02562 * 14 6 5 16 16 C 1.40915 * 119.84717 * 179.97438 * 15 14 6 17 17 H 1.08002 * 120.00197 * 180.02562 * 16 15 14 18 18 C 1.40028 * 119.99903 * 359.71557 * 16 15 14 19 19 N 1.30779 * 119.99920 * 180.27740 * 18 16 15 20 20 Si 1.86800 * 120.00225 * 0.28261 * 18 16 15 21 21 H 1.48503 * 109.47086 * 59.99569 * 20 18 16 22 22 H 1.48503 * 109.47151 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46879 * 299.99513 * 20 18 16 24 24 H 1.09007 * 109.46926 * 59.99721 * 1 2 3 25 25 H 1.09004 * 109.47368 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47271 * 300.00195 * 1 2 3 27 27 H 1.07999 * 120.68585 * 359.97438 * 4 3 2 28 28 H 1.08004 * 120.19983 * 179.71996 * 5 4 3 29 29 H 0.97007 * 119.99763 * 180.02562 * 7 6 5 30 30 H 1.08997 * 109.46601 * 299.99887 * 8 7 6 31 31 H 1.08997 * 109.46669 * 59.99569 * 8 7 6 32 32 H 0.96694 * 114.00027 * 59.99761 * 11 9 8 33 33 H 1.08993 * 109.47484 * 295.00069 * 12 9 8 34 34 H 1.09003 * 109.47076 * 55.00216 * 12 9 8 35 35 H 0.97000 * 120.00616 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2971 2.3820 0.0050 5 6 1.9650 3.5931 -0.0008 6 6 3.3643 3.6107 -0.0060 7 7 4.0330 4.8282 -0.0123 8 6 3.2736 6.0810 -0.0129 9 6 4.2428 7.2649 -0.0197 10 1 4.9321 7.1749 0.8200 11 8 4.9806 7.2695 -1.2434 12 6 3.4544 8.5701 0.1054 13 17 4.6015 9.9541 0.2453 14 7 4.0578 2.4891 -0.0050 15 6 3.4543 1.2946 0.0005 16 6 4.2291 0.1175 0.0009 17 1 3.7447 -0.8478 0.0049 18 6 5.6269 0.1994 -0.0105 19 7 6.3458 -0.8931 -0.0157 20 14 6.4648 1.8689 -0.0182 21 1 6.0709 2.6260 1.1971 22 1 7.9381 1.6833 -0.0295 23 1 6.0513 2.6246 -1.2279 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 0.2177 2.3479 0.0085 28 1 1.4100 4.5196 -0.0017 29 1 5.0028 4.8489 -0.0163 30 1 2.6423 6.1227 -0.9004 31 1 2.6494 6.1279 0.8795 32 1 4.4298 7.3471 -2.0344 33 1 2.8300 8.7036 -0.7779 34 1 2.8236 8.5299 0.9935 35 1 7.3142 -0.8365 -0.0232 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169640467.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:51 Heat of formation + Delta-G solvation = -71.195811 kcal Electronic energy + Delta-G solvation = -20316.158037 eV Core-core repulsion = 16953.990470 eV Total energy + Delta-G solvation = -3362.167568 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.30149 -38.35535 -37.05343 -36.02604 -34.69403 -33.33455 -31.19064 -31.00223 -29.03388 -26.76282 -25.69319 -24.96878 -22.34137 -21.59339 -20.55201 -17.77018 -17.24778 -16.75271 -16.57837 -16.40452 -15.29900 -15.04883 -14.79407 -14.49086 -14.15926 -13.99413 -13.50107 -13.11862 -13.06098 -12.95051 -12.39761 -12.34627 -11.88098 -11.58058 -11.49117 -10.99801 -10.87431 -10.85341 -10.70442 -10.63814 -10.59847 -10.15592 -9.83386 -9.32293 -8.75445 -8.53784 -7.68916 -6.90350 -6.64141 -4.57934 1.90788 2.52952 2.79650 3.46806 3.60799 3.62274 3.72960 4.09256 4.33460 4.44820 4.53645 4.55522 4.60164 4.68748 4.98869 5.11736 5.49508 5.55419 5.67395 5.74849 5.76067 5.78728 5.96580 6.10591 6.34773 6.46158 6.94354 6.99555 7.27376 7.37684 7.39574 7.95956 8.10114 8.15282 8.31782 8.63169 8.82889 9.57649 10.01481 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.017988 B = 0.004687 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.200532 B = 5972.372865 C = 7400.389803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.308 6.308 3 C -0.058 4.058 4 C -0.103 4.103 5 C -0.349 4.349 6 C 0.422 3.578 7 N -0.736 5.736 8 C 0.111 3.889 9 C 0.087 3.913 10 H 0.116 0.884 11 O -0.544 6.544 12 C -0.064 4.064 13 Cl -0.172 7.172 14 N -0.605 5.605 15 C 0.275 3.725 16 C -0.383 4.383 17 H 0.104 0.896 18 C 0.074 3.926 19 N -0.794 5.794 20 Si 1.024 2.976 21 H -0.277 1.277 22 H -0.343 1.343 23 H -0.275 1.275 24 H 0.038 0.962 25 H 0.083 0.917 26 H 0.039 0.961 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.399 0.601 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.376 0.624 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.225 14.747 -0.255 16.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.221 6.221 3 C -0.106 4.106 4 C -0.127 4.127 5 C -0.375 4.375 6 C 0.187 3.813 7 N -0.374 5.374 8 C -0.015 4.015 9 C 0.027 3.973 10 H 0.133 0.867 11 O -0.349 6.349 12 C -0.128 4.128 13 Cl -0.145 7.145 14 N -0.335 5.335 15 C 0.150 3.850 16 C -0.415 4.415 17 H 0.122 0.878 18 C -0.149 4.149 19 N -0.417 5.417 20 Si 0.863 3.137 21 H -0.205 1.205 22 H -0.278 1.278 23 H -0.203 1.203 24 H 0.057 0.943 25 H 0.102 0.898 26 H 0.057 0.943 27 H 0.124 0.876 28 H 0.117 0.883 29 H 0.234 0.766 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.224 0.776 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.723 14.497 0.158 15.587 hybrid contribution -1.094 0.889 -0.311 1.443 sum -6.816 15.386 -0.153 16.829 Atomic orbital electron populations 1.22738 0.81650 1.01947 0.99738 1.85961 1.18216 1.27318 1.90589 1.19567 0.92629 0.83505 1.14856 1.20728 0.97672 0.92086 1.02255 1.20111 0.91743 0.96741 1.28933 1.17966 0.88229 0.84670 0.90448 1.43972 1.08055 1.01297 1.84041 1.21720 0.94052 0.83778 1.01963 1.22441 0.94330 0.90880 0.89640 0.86668 1.86690 1.37041 1.96235 1.14982 1.25026 0.93897 0.87835 1.06001 1.98732 1.66723 1.50192 1.98859 1.65842 1.36278 0.97137 1.34285 1.17695 0.86920 0.89861 0.90475 1.19534 0.90831 0.93449 1.37644 0.87775 1.26584 0.98036 1.01125 0.89183 1.69619 1.08605 1.31530 1.31937 0.84074 0.69992 0.78451 0.81228 1.20471 1.27768 1.20265 0.94302 0.89831 0.94293 0.87583 0.88300 0.76611 0.92062 0.91540 0.77594 0.88308 0.87682 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 9.83 101.05 0.99 1.57 16 2 O -0.31 -6.98 9.61 -18.56 -0.18 -7.15 16 3 C -0.06 -1.40 6.74 -38.11 -0.26 -1.66 16 4 C -0.10 -2.18 9.12 -39.22 -0.36 -2.53 16 5 C -0.35 -7.12 9.33 -38.92 -0.36 -7.48 16 6 C 0.42 9.31 7.65 -155.27 -1.19 8.12 16 7 N -0.74 -13.11 5.67 -60.35 -0.34 -13.45 16 8 C 0.11 1.34 4.52 -4.04 -0.02 1.32 16 9 C 0.09 0.87 3.08 -26.73 -0.08 0.79 16 10 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 11 O -0.54 -6.14 13.12 -35.23 -0.46 -6.60 16 12 C -0.06 -0.47 6.31 37.16 0.23 -0.23 16 13 Cl -0.17 -1.69 29.00 -51.86 -1.50 -3.19 16 14 N -0.60 -15.43 4.50 -10.20 -0.05 -15.48 16 15 C 0.28 7.34 6.44 -84.85 -0.55 6.79 16 16 C -0.38 -10.79 9.52 -37.90 -0.36 -11.15 16 17 H 0.10 3.05 7.52 -52.49 -0.39 2.66 16 18 C 0.07 2.02 5.52 -17.33 -0.10 1.93 16 19 N -0.79 -21.61 13.92 55.55 0.77 -20.83 16 20 Si 1.02 25.41 25.07 -169.99 -4.26 21.15 16 21 H -0.28 -7.00 6.94 56.52 0.39 -6.61 16 22 H -0.34 -8.29 7.11 56.52 0.40 -7.89 16 23 H -0.28 -7.00 6.93 56.52 0.39 -6.61 16 24 H 0.04 0.58 7.70 -51.92 -0.40 0.18 16 25 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.04 0.58 7.68 -51.93 -0.40 0.18 16 27 H 0.11 1.90 6.43 -52.49 -0.34 1.56 16 28 H 0.10 1.70 6.67 -52.48 -0.35 1.35 16 29 H 0.40 7.40 8.59 -40.82 -0.35 7.05 16 30 H 0.06 0.68 7.91 -51.93 -0.41 0.27 16 31 H 0.07 0.75 7.92 -51.93 -0.41 0.34 16 32 H 0.38 2.99 9.04 45.56 0.41 3.40 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.29 7.21 8.30 -40.82 -0.34 6.87 16 LS Contribution 310.24 15.07 4.68 4.68 Total: -1.00 -31.92 310.24 -6.87 -38.79 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -3.49 Total: 4.63 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -2.04 Total: -2.54 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: 0.39 Total: -49.76 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.64 Total: -13.75 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -4.26 Total: 21.15 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -1.50 Total: -3.19 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.92 -6.87 -38.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169640467.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.405 kcal (2) G-P(sol) polarization free energy of solvation -31.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds