Wall clock time and date at job start Tue Mar 31 2020 06:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35620 * 116.99905 * 2 1 4 4 C 1.39151 * 120.50531 * 0.23806 * 3 2 1 5 5 C 1.38306 * 118.62672 * 180.26233 * 4 3 2 6 6 C 1.39942 * 119.59824 * 359.74602 * 5 4 3 7 7 N 1.38900 * 119.49723 * 179.97438 * 6 5 4 8 8 C 1.46502 * 120.00280 * 0.02562 * 7 6 5 9 9 C 1.52999 * 109.47045 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.46950 * 304.99475 * 9 8 7 11 11 O 1.42896 * 109.47366 * 65.00276 * 9 8 7 12 12 C 1.53003 * 109.46829 * 184.99923 * 9 8 7 13 13 Cl 1.80298 * 109.47020 * 174.99668 * 12 9 8 14 14 N 1.31865 * 121.00471 * 359.97438 * 6 5 4 15 15 C 1.33830 * 121.47224 * 0.02562 * 14 6 5 16 16 C 1.40915 * 119.84717 * 179.97438 * 15 14 6 17 17 H 1.08002 * 120.00197 * 180.02562 * 16 15 14 18 18 C 1.40028 * 119.99903 * 359.71557 * 16 15 14 19 19 N 1.30779 * 119.99920 * 180.27740 * 18 16 15 20 20 Si 1.86800 * 120.00225 * 0.28261 * 18 16 15 21 21 H 1.48503 * 109.47086 * 59.99569 * 20 18 16 22 22 H 1.48503 * 109.47151 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46879 * 299.99513 * 20 18 16 24 24 H 1.09007 * 109.46926 * 59.99721 * 1 2 3 25 25 H 1.09004 * 109.47368 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47271 * 300.00195 * 1 2 3 27 27 H 1.07999 * 120.68585 * 359.97438 * 4 3 2 28 28 H 1.08004 * 120.19983 * 179.71996 * 5 4 3 29 29 H 0.97007 * 119.99763 * 180.02562 * 7 6 5 30 30 H 1.08997 * 109.46601 * 299.99887 * 8 7 6 31 31 H 1.08997 * 109.46669 * 59.99569 * 8 7 6 32 32 H 0.96694 * 114.00027 * 59.99761 * 11 9 8 33 33 H 1.08993 * 109.47484 * 295.00069 * 12 9 8 34 34 H 1.09003 * 109.47076 * 55.00216 * 12 9 8 35 35 H 0.97000 * 120.00616 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2971 2.3820 0.0050 5 6 1.9650 3.5931 -0.0008 6 6 3.3643 3.6107 -0.0060 7 7 4.0330 4.8282 -0.0123 8 6 3.2736 6.0810 -0.0129 9 6 4.2428 7.2649 -0.0197 10 1 4.9321 7.1749 0.8200 11 8 4.9806 7.2695 -1.2434 12 6 3.4544 8.5701 0.1054 13 17 4.6015 9.9541 0.2453 14 7 4.0578 2.4891 -0.0050 15 6 3.4543 1.2946 0.0005 16 6 4.2291 0.1175 0.0009 17 1 3.7447 -0.8478 0.0049 18 6 5.6269 0.1994 -0.0105 19 7 6.3458 -0.8931 -0.0157 20 14 6.4648 1.8689 -0.0182 21 1 6.0709 2.6260 1.1971 22 1 7.9381 1.6833 -0.0295 23 1 6.0513 2.6246 -1.2279 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 0.2177 2.3479 0.0085 28 1 1.4100 4.5196 -0.0017 29 1 5.0028 4.8489 -0.0163 30 1 2.6423 6.1227 -0.9004 31 1 2.6494 6.1279 0.8795 32 1 4.4298 7.3471 -2.0344 33 1 2.8300 8.7036 -0.7779 34 1 2.8236 8.5299 0.9935 35 1 7.3142 -0.8365 -0.0232 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169640467.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:51 Heat of formation + Delta-G solvation = -95.566641 kcal Electronic energy + Delta-G solvation = -20317.214836 eV Core-core repulsion = 16953.990470 eV Total energy + Delta-G solvation = -3363.224366 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.98663 -39.40473 -38.52936 -36.76499 -36.20979 -35.05840 -32.80092 -32.22402 -30.52455 -28.20402 -27.18319 -26.28304 -23.74931 -22.82487 -22.19466 -19.63925 -18.77327 -18.29250 -17.70979 -17.26409 -16.82661 -16.63681 -16.31441 -15.73322 -15.36273 -15.11561 -14.79996 -14.65789 -14.36545 -14.16391 -14.09245 -13.53135 -13.52280 -13.18500 -12.75015 -12.71285 -12.38034 -12.35278 -12.10718 -11.79836 -11.58727 -11.35104 -11.30110 -10.94425 -10.37854 -10.24161 -9.56559 -8.89211 -8.32337 -6.53471 0.68727 1.02950 1.27812 1.47571 1.64088 1.68666 2.36940 2.50698 2.67334 2.96090 3.40146 3.54959 3.64247 3.84723 3.93312 4.13471 4.33684 4.35538 4.46602 4.51646 4.52986 4.59226 4.70744 4.75513 4.78809 4.95773 5.11580 5.37636 5.58843 5.65969 6.08250 6.25881 6.40329 6.60109 6.72765 6.79471 7.12255 7.75665 8.09229 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.017988 B = 0.004687 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.200532 B = 5972.372865 C = 7400.389803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.341 6.341 3 C -0.082 4.082 4 C -0.092 4.092 5 C -0.319 4.319 6 C 0.399 3.601 7 N -0.735 5.735 8 C 0.106 3.894 9 C 0.095 3.905 10 H 0.101 0.899 11 O -0.566 6.566 12 C -0.054 4.054 13 Cl -0.194 7.194 14 N -0.624 5.624 15 C 0.258 3.742 16 C -0.432 4.432 17 H 0.071 0.929 18 C 0.044 3.956 19 N -0.835 5.835 20 Si 1.080 2.920 21 H -0.287 1.287 22 H -0.337 1.337 23 H -0.287 1.287 24 H 0.055 0.945 25 H 0.106 0.894 26 H 0.055 0.945 27 H 0.147 0.853 28 H 0.145 0.855 29 H 0.393 0.607 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.390 0.610 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.026 18.085 -0.326 20.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.256 6.256 3 C -0.130 4.130 4 C -0.116 4.116 5 C -0.345 4.345 6 C 0.163 3.837 7 N -0.370 5.370 8 C -0.018 4.018 9 C 0.035 3.965 10 H 0.119 0.881 11 O -0.374 6.374 12 C -0.117 4.117 13 Cl -0.168 7.168 14 N -0.355 5.355 15 C 0.132 3.868 16 C -0.464 4.464 17 H 0.090 0.910 18 C -0.174 4.174 19 N -0.460 5.460 20 Si 0.918 3.082 21 H -0.215 1.215 22 H -0.272 1.272 23 H -0.215 1.215 24 H 0.073 0.927 25 H 0.124 0.876 26 H 0.074 0.926 27 H 0.165 0.835 28 H 0.163 0.837 29 H 0.226 0.774 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.240 0.760 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.545 17.885 0.082 19.821 hybrid contribution -0.553 0.091 -0.301 0.636 sum -9.099 17.976 -0.219 20.149 Atomic orbital electron populations 1.23095 0.78410 1.04187 1.01156 1.85918 1.21634 1.27204 1.90800 1.19658 0.92170 0.85213 1.15983 1.21223 0.99712 0.90980 0.99721 1.20707 0.91204 0.98418 1.24134 1.18466 0.89507 0.85099 0.90615 1.44256 1.08203 1.01731 1.82840 1.22071 0.94371 0.81745 1.03647 1.22321 0.93835 0.91479 0.88900 0.88063 1.86669 1.38348 1.96325 1.16023 1.25096 0.92966 0.85302 1.08332 1.98739 1.67849 1.51287 1.98938 1.65678 1.37696 0.97954 1.34182 1.17812 0.88573 0.89809 0.90625 1.19375 0.91525 0.93113 1.42410 0.91040 1.27070 0.98199 1.03021 0.89091 1.69635 1.09023 1.32312 1.35056 0.83234 0.69506 0.75644 0.79838 1.21504 1.27163 1.21524 0.92661 0.87560 0.92643 0.83502 0.83696 0.77359 0.90018 0.89695 0.75996 0.85802 0.85556 0.89354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.83 113.37 1.11 1.91 16 2 O -0.34 -15.46 9.61 -89.32 -0.86 -16.32 16 3 C -0.08 -3.92 6.74 23.22 0.16 -3.77 16 4 C -0.09 -3.50 9.12 22.51 0.21 -3.30 16 5 C -0.32 -11.44 9.33 22.70 0.21 -11.22 16 6 C 0.40 16.53 7.65 133.45 1.02 17.55 16 7 N -0.73 -23.98 5.67 -344.86 -1.96 -25.94 16 8 C 0.11 2.05 4.52 86.38 0.39 2.44 16 9 C 0.09 1.56 3.08 30.59 0.09 1.65 16 10 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 11 O -0.57 -11.23 13.12 -148.98 -1.95 -13.19 16 12 C -0.05 -0.56 6.31 71.98 0.45 -0.11 16 13 Cl -0.19 -3.35 29.00 -2.72 -0.08 -3.42 16 14 N -0.62 -31.68 4.50 -186.18 -0.84 -32.52 16 15 C 0.26 14.04 6.44 40.23 0.26 14.30 16 16 C -0.43 -25.80 9.52 23.36 0.22 -25.58 16 17 H 0.07 4.56 7.52 -2.91 -0.02 4.54 16 18 C 0.04 2.54 5.52 85.28 0.47 3.02 16 19 N -0.83 -48.11 13.92 21.84 0.30 -47.81 16 20 Si 1.08 54.47 25.07 68.60 1.72 56.19 16 21 H -0.29 -14.61 6.94 99.48 0.69 -13.92 16 22 H -0.34 -16.27 7.11 99.48 0.71 -15.56 16 23 H -0.29 -14.72 6.93 99.48 0.69 -14.03 16 24 H 0.05 1.46 7.70 -2.38 -0.02 1.44 16 25 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 26 H 0.06 1.47 7.68 -2.39 -0.02 1.45 16 27 H 0.15 4.37 6.43 -2.91 -0.02 4.35 16 28 H 0.15 3.89 6.67 -2.91 -0.02 3.87 16 29 H 0.39 13.89 8.59 -92.70 -0.80 13.09 16 30 H 0.08 1.32 7.91 -2.39 -0.02 1.30 16 31 H 0.09 1.40 7.92 -2.39 -0.02 1.38 16 32 H 0.39 4.95 9.04 -74.06 -0.67 4.28 16 33 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.30 15.51 8.30 -92.71 -0.77 14.74 16 Total: -1.00 -73.66 310.24 0.58 -73.08 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -0.36 Total: 13.03 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 4.60 Total: -3.11 kcal Atomic # 7 Polarization: -103.78 SS G_CDS: -2.49 Total: -106.27 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -2.81 Total: -29.50 kcal Atomic # 14 Polarization: 54.47 SS G_CDS: 1.72 Total: 56.19 kcal Atomic # 17 Polarization: -3.35 SS G_CDS: -0.08 Total: -3.42 kcal Total: -73.66 0.58 -73.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169640467.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.484 kcal (2) G-P(sol) polarization free energy of solvation -73.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds