Wall clock time and date at job start Tue Mar 31 2020 06:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76196 * 102.99976 * 2 1 4 4 C 1.39206 * 119.62743 * 179.97438 * 3 2 1 5 5 C 1.38195 * 119.17915 * 179.74804 * 4 3 2 6 6 C 1.39539 * 118.44247 * 0.51889 * 5 4 3 7 7 N 1.39839 * 120.40822 * 179.76143 * 6 5 4 8 8 C 1.38722 * 120.00404 * 149.15164 * 7 6 5 9 9 C 1.39633 * 119.84799 * 327.00763 * 8 7 6 10 10 C 1.36292 * 120.15650 * 179.97438 * 9 8 7 11 11 C 1.40913 * 119.84198 * 0.02562 * 10 9 8 12 12 C 1.41096 * 120.14772 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99882 * 27.24113 * 12 11 10 14 14 C 1.39817 * 119.99819 * 207.22942 * 12 11 10 15 15 N 1.30933 * 119.99848 * 15.56230 * 14 12 11 16 16 Si 1.86801 * 120.00031 * 195.55330 * 14 12 11 17 17 H 1.48491 * 109.47195 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46993 * 120.00747 * 16 14 12 19 19 H 1.48499 * 109.47305 * 240.00556 * 16 14 12 20 20 C 1.40908 * 119.69948 * 359.97438 * 11 10 9 21 21 C 1.36297 * 119.83954 * 359.97438 * 20 11 10 22 22 C 1.38742 * 119.18490 * 359.47745 * 6 5 4 23 23 N 1.31939 * 120.74865 * 0.28530 * 22 6 5 24 24 H 1.08997 * 109.46679 * 299.99472 * 1 2 3 25 25 H 1.08997 * 109.47352 * 60.00301 * 1 2 3 26 26 H 1.09009 * 109.46706 * 179.97438 * 1 2 3 27 27 H 1.07996 * 120.40831 * 0.02562 * 4 3 2 28 28 H 1.07999 * 120.77684 * 180.25210 * 5 4 3 29 29 H 0.97007 * 119.99503 * 329.15368 * 7 6 5 30 30 H 1.08000 * 119.92123 * 359.70056 * 9 8 7 31 31 H 1.08004 * 120.08210 * 179.97438 * 10 9 8 32 32 H 0.97005 * 119.99692 * 179.97438 * 15 14 12 33 33 H 1.07993 * 120.08097 * 179.97438 * 20 11 10 34 34 H 1.08004 * 119.91940 * 179.97438 * 21 20 11 35 35 H 1.07999 * 119.62903 * 180.25524 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5442 2.1151 0.0005 5 6 3.8445 3.4641 -0.0048 6 6 2.7914 4.3794 0.0006 7 7 3.0483 5.7540 0.0006 8 6 2.1592 6.6259 -0.6108 9 6 1.4523 6.2166 -1.7433 10 6 0.5768 7.0679 -2.3486 11 6 0.3864 8.3639 -1.8294 12 6 -0.5179 9.2507 -2.4513 13 1 -1.3589 8.8626 -3.0067 14 6 -0.3253 10.6317 -2.3482 15 7 0.8293 11.1037 -1.9502 16 14 -1.7152 11.8032 -2.7784 17 1 -2.9078 11.0239 -3.1971 18 1 -2.0546 12.6263 -1.5898 19 1 -1.2883 12.6909 -3.8897 20 6 1.1031 8.7703 -0.6863 21 6 1.9746 7.9083 -0.0903 22 6 1.4861 3.9090 0.0000 23 7 1.2360 2.6136 0.0001 24 1 -0.3632 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 4.3345 1.3791 0.0005 28 1 4.8703 3.8018 -0.0086 29 1 3.8483 6.0978 0.4281 30 1 1.6029 5.2247 -2.1430 31 1 0.0310 6.7502 -3.2248 32 1 0.9630 12.0619 -1.8791 33 1 0.9622 9.7623 -0.2833 34 1 2.5249 8.2186 0.7857 35 1 0.6655 4.6112 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175652815.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:41 Heat of formation + Delta-G solvation = 53.234160 kcal Electronic energy + Delta-G solvation = -18830.682169 eV Core-core repulsion = 15919.096010 eV Total energy + Delta-G solvation = -2911.586159 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.03523 -38.00079 -35.46624 -33.35470 -32.02273 -30.34490 -29.41445 -28.91841 -28.26723 -24.96513 -23.51479 -22.74049 -21.02743 -20.51884 -17.88694 -17.43316 -16.95847 -16.70485 -15.41606 -15.26956 -14.90808 -14.23019 -14.03215 -14.00430 -13.51089 -13.34127 -13.13627 -12.81424 -12.59934 -12.23935 -12.08735 -12.04530 -11.56815 -11.24773 -11.02180 -10.72849 -10.55416 -10.45567 -9.90100 -9.61567 -9.57382 -9.42559 -9.31602 -8.57456 -7.72978 -7.48160 -6.85529 -6.57462 -4.34721 1.29079 1.45424 1.65806 2.37962 2.66880 2.91505 3.03570 3.08476 3.10827 3.87424 3.89688 3.97195 4.53589 4.84159 5.08429 5.13503 5.24060 5.25292 5.32591 5.55610 5.81087 5.84562 6.05218 6.06763 6.12664 6.24442 6.57602 6.78098 6.89149 6.96031 7.10630 7.33263 7.44719 7.57332 7.91518 8.00027 8.08099 8.18827 8.29345 8.51975 8.79089 8.86322 10.11367 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.031977 B = 0.003291 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.424204 B = 8506.455266 C = 9171.434270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.109 6.109 3 C 0.055 3.945 4 C -0.106 4.106 5 C -0.139 4.139 6 C 0.163 3.837 7 N -0.665 5.665 8 C 0.017 3.983 9 C -0.111 4.111 10 C -0.202 4.202 11 C 0.101 3.899 12 C -0.458 4.458 13 H 0.079 0.921 14 C 0.074 3.926 15 N -0.796 5.796 16 Si 0.909 3.091 17 H -0.260 1.260 18 H -0.272 1.272 19 H -0.274 1.274 20 C -0.141 4.141 21 C -0.121 4.121 22 C 0.067 3.933 23 N -0.456 5.456 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.398 0.602 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.280 0.720 33 H 0.121 0.879 34 H 0.091 0.909 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.186 -12.185 4.284 13.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S 0.127 5.873 3 C -0.194 4.194 4 C -0.132 4.132 5 C -0.170 4.170 6 C 0.056 3.944 7 N -0.285 5.285 8 C -0.077 4.077 9 C -0.132 4.132 10 C -0.222 4.222 11 C 0.098 3.902 12 C -0.487 4.487 13 H 0.097 0.903 14 C -0.143 4.143 15 N -0.422 5.422 16 Si 0.733 3.267 17 H -0.184 1.184 18 H -0.197 1.197 19 H -0.200 1.200 20 C -0.161 4.161 21 C -0.142 4.142 22 C -0.099 4.099 23 N -0.168 5.168 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.115 0.885 27 H 0.150 0.850 28 H 0.152 0.848 29 H 0.233 0.767 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.138 0.862 34 H 0.109 0.891 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.960 -13.196 4.237 14.172 hybrid contribution -0.086 2.271 -0.107 2.275 sum 2.875 -10.925 4.130 12.028 Atomic orbital electron populations 1.23344 0.93796 1.05424 1.06638 1.85122 1.07883 1.00838 1.93453 1.22468 0.91980 0.97383 1.07584 1.21312 0.95462 0.95792 1.00677 1.21112 0.98755 0.92101 1.05044 1.18835 0.94256 0.85352 0.95998 1.41569 1.25510 1.01492 1.59974 1.17143 1.01723 0.91299 0.97546 1.20154 0.99727 0.98522 0.94759 1.20636 1.03710 0.96280 1.01612 1.17642 0.91053 0.91142 0.90346 1.19555 1.09797 0.90472 1.28920 0.90299 1.25903 0.95928 0.99440 0.93068 1.69854 1.22027 1.15284 1.35040 0.86246 0.81716 0.79858 0.78846 1.18372 1.19700 1.19982 1.20917 0.99368 0.99416 0.96432 1.20256 1.00922 0.93554 0.99423 1.22610 0.95335 0.91128 1.00841 1.67841 1.34694 1.02148 1.12077 0.89710 0.89639 0.88489 0.84955 0.84787 0.76696 0.89233 0.88574 0.90884 0.86169 0.89062 0.82087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 10.01 101.05 1.01 -0.31 16 2 S -0.11 -1.37 22.55 -107.50 -2.42 -3.79 16 3 C 0.05 0.83 7.00 -16.94 -0.12 0.71 16 4 C -0.11 -1.44 9.83 -39.24 -0.39 -1.82 16 5 C -0.14 -1.91 10.09 -39.11 -0.39 -2.31 16 6 C 0.16 2.64 5.89 -83.53 -0.49 2.15 16 7 N -0.66 -11.13 5.41 -8.17 -0.04 -11.18 16 8 C 0.02 0.34 5.84 -83.70 -0.49 -0.15 16 9 C -0.11 -2.40 7.95 -39.76 -0.32 -2.71 16 10 C -0.20 -4.76 9.74 -39.27 -0.38 -5.15 16 11 C 0.10 2.56 5.55 -106.79 -0.59 1.97 16 12 C -0.46 -11.69 9.03 -37.91 -0.34 -12.03 16 13 H 0.08 1.95 7.89 -52.49 -0.41 1.53 16 14 C 0.07 1.79 5.16 -17.34 -0.09 1.70 16 15 N -0.80 -19.84 11.00 55.54 0.61 -19.23 16 16 Si 0.91 18.11 29.59 -169.99 -5.03 13.08 16 17 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 18 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 19 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 20 C -0.14 -3.45 8.61 -39.27 -0.34 -3.79 16 21 C -0.12 -2.61 9.89 -39.76 -0.39 -3.01 16 22 C 0.07 1.16 9.23 -17.32 -0.16 1.00 16 23 N -0.46 -7.64 9.41 -11.94 -0.11 -7.75 16 24 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.10 0.79 8.14 -51.92 -0.42 0.36 16 27 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 28 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.40 5.71 8.92 -40.82 -0.36 5.35 16 30 H 0.09 1.85 6.86 -52.49 -0.36 1.49 16 31 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 32 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 33 H 0.12 3.04 6.27 -52.49 -0.33 2.71 16 34 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 35 H 0.16 2.99 6.77 -52.49 -0.36 2.63 16 LS Contribution 314.76 15.07 4.74 4.74 Total: -1.00 -26.56 314.76 -9.65 -36.21 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -3.92 Total: 11.66 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: -3.48 Total: -23.75 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.45 Total: -38.16 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -2.42 Total: -3.79 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -26.56 -9.65 -36.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175652815.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.447 kcal (2) G-P(sol) polarization free energy of solvation -26.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds