Wall clock time and date at job start Tue Mar 31 2020 06:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76196 * 102.99976 * 2 1 4 4 C 1.39206 * 119.62743 * 179.97438 * 3 2 1 5 5 C 1.38195 * 119.17915 * 179.74804 * 4 3 2 6 6 C 1.39539 * 118.44247 * 0.51889 * 5 4 3 7 7 N 1.39839 * 120.40822 * 179.76143 * 6 5 4 8 8 C 1.38722 * 120.00404 * 149.15164 * 7 6 5 9 9 C 1.39633 * 119.84799 * 327.00763 * 8 7 6 10 10 C 1.36292 * 120.15650 * 179.97438 * 9 8 7 11 11 C 1.40913 * 119.84198 * 0.02562 * 10 9 8 12 12 C 1.41096 * 120.14772 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99882 * 27.24113 * 12 11 10 14 14 C 1.39817 * 119.99819 * 207.22942 * 12 11 10 15 15 N 1.30933 * 119.99848 * 15.56230 * 14 12 11 16 16 Si 1.86801 * 120.00031 * 195.55330 * 14 12 11 17 17 H 1.48491 * 109.47195 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46993 * 120.00747 * 16 14 12 19 19 H 1.48499 * 109.47305 * 240.00556 * 16 14 12 20 20 C 1.40908 * 119.69948 * 359.97438 * 11 10 9 21 21 C 1.36297 * 119.83954 * 359.97438 * 20 11 10 22 22 C 1.38742 * 119.18490 * 359.47745 * 6 5 4 23 23 N 1.31939 * 120.74865 * 0.28530 * 22 6 5 24 24 H 1.08997 * 109.46679 * 299.99472 * 1 2 3 25 25 H 1.08997 * 109.47352 * 60.00301 * 1 2 3 26 26 H 1.09009 * 109.46706 * 179.97438 * 1 2 3 27 27 H 1.07996 * 120.40831 * 0.02562 * 4 3 2 28 28 H 1.07999 * 120.77684 * 180.25210 * 5 4 3 29 29 H 0.97007 * 119.99503 * 329.15368 * 7 6 5 30 30 H 1.08000 * 119.92123 * 359.70056 * 9 8 7 31 31 H 1.08004 * 120.08210 * 179.97438 * 10 9 8 32 32 H 0.97005 * 119.99692 * 179.97438 * 15 14 12 33 33 H 1.07993 * 120.08097 * 179.97438 * 20 11 10 34 34 H 1.08004 * 119.91940 * 179.97438 * 21 20 11 35 35 H 1.07999 * 119.62903 * 180.25524 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5442 2.1151 0.0005 5 6 3.8445 3.4641 -0.0048 6 6 2.7914 4.3794 0.0006 7 7 3.0483 5.7540 0.0006 8 6 2.1592 6.6259 -0.6108 9 6 1.4523 6.2166 -1.7433 10 6 0.5768 7.0679 -2.3486 11 6 0.3864 8.3639 -1.8294 12 6 -0.5179 9.2507 -2.4513 13 1 -1.3589 8.8626 -3.0067 14 6 -0.3253 10.6317 -2.3482 15 7 0.8293 11.1037 -1.9502 16 14 -1.7152 11.8032 -2.7784 17 1 -2.9078 11.0239 -3.1971 18 1 -2.0546 12.6263 -1.5898 19 1 -1.2883 12.6909 -3.8897 20 6 1.1031 8.7703 -0.6863 21 6 1.9746 7.9083 -0.0903 22 6 1.4861 3.9090 0.0000 23 7 1.2360 2.6136 0.0001 24 1 -0.3632 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 4.3345 1.3791 0.0005 28 1 4.8703 3.8018 -0.0086 29 1 3.8483 6.0978 0.4281 30 1 1.6029 5.2247 -2.1430 31 1 0.0310 6.7502 -3.2248 32 1 0.9630 12.0619 -1.8791 33 1 0.9622 9.7623 -0.2833 34 1 2.5249 8.2186 0.7857 35 1 0.6655 4.6112 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175652815.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:40 Heat of formation + Delta-G solvation = 40.009093 kcal Electronic energy + Delta-G solvation = -18831.255651 eV Core-core repulsion = 15919.096010 eV Total energy + Delta-G solvation = -2912.159641 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.31596 -39.63787 -37.00443 -35.04422 -33.24689 -31.92987 -31.08907 -30.09830 -29.53828 -26.65725 -24.75685 -24.11691 -22.75153 -22.17207 -19.27893 -18.97229 -18.32688 -18.13051 -16.99135 -16.77986 -16.00703 -15.75444 -15.40370 -15.22895 -14.93065 -14.54829 -14.34835 -14.22127 -14.01219 -13.78509 -13.72352 -13.35984 -12.97415 -12.84831 -12.70008 -12.31077 -12.15909 -11.64095 -11.47515 -11.34076 -11.04462 -10.74059 -10.62037 -10.02597 -9.52533 -8.86154 -8.62163 -7.98485 -6.20515 0.05710 0.28320 0.62915 0.98242 1.08746 1.38730 1.39776 1.50191 1.54014 2.22420 2.54146 2.67630 2.81633 3.65447 3.71151 3.95180 4.08201 4.16647 4.34356 4.34536 4.37600 4.39892 4.67176 4.85839 4.95333 4.97503 5.07316 5.09792 5.19575 5.28889 5.46329 5.64254 5.66832 5.86512 6.06935 6.28017 6.50863 6.68075 6.76633 6.93955 6.94896 7.07724 8.35979 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.031977 B = 0.003291 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.424204 B = 8506.455266 C = 9171.434270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.091 6.091 3 C 0.044 3.956 4 C -0.106 4.106 5 C -0.119 4.119 6 C 0.147 3.853 7 N -0.663 5.663 8 C 0.048 3.952 9 C -0.115 4.115 10 C -0.214 4.214 11 C 0.068 3.932 12 C -0.498 4.498 13 H 0.072 0.928 14 C 0.035 3.965 15 N -0.830 5.830 16 Si 0.980 3.020 17 H -0.261 1.261 18 H -0.264 1.264 19 H -0.267 1.267 20 C -0.158 4.158 21 C -0.127 4.127 22 C 0.048 3.952 23 N -0.475 5.475 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.127 0.873 27 H 0.166 0.834 28 H 0.168 0.832 29 H 0.413 0.587 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.287 0.713 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.589 -14.103 4.909 15.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S 0.145 5.855 3 C -0.205 4.205 4 C -0.131 4.131 5 C -0.150 4.150 6 C 0.041 3.959 7 N -0.287 5.287 8 C -0.048 4.048 9 C -0.136 4.136 10 C -0.234 4.234 11 C 0.065 3.935 12 C -0.528 4.528 13 H 0.090 0.910 14 C -0.179 4.179 15 N -0.456 5.456 16 Si 0.801 3.199 17 H -0.184 1.184 18 H -0.189 1.189 19 H -0.192 1.192 20 C -0.178 4.178 21 C -0.148 4.148 22 C -0.117 4.117 23 N -0.187 5.187 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.145 0.855 27 H 0.183 0.817 28 H 0.186 0.814 29 H 0.251 0.749 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.135 0.865 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.386 -15.155 4.881 16.514 hybrid contribution -0.401 2.471 -0.212 2.512 sum 3.986 -12.684 4.669 14.091 Atomic orbital electron populations 1.23434 0.92670 1.07183 1.05878 1.85055 1.09124 0.98426 1.92851 1.23119 0.92740 0.98567 1.06107 1.21740 0.95634 0.96453 0.99292 1.21491 0.99611 0.91677 1.02193 1.18893 0.94524 0.85176 0.97320 1.41359 1.25480 1.01414 1.60407 1.17137 1.00243 0.91190 0.96185 1.20227 0.99617 0.98604 0.95172 1.20765 1.04393 0.96289 1.01990 1.17917 0.92202 0.92049 0.91293 1.19736 1.10511 0.91795 1.30793 0.90963 1.26661 0.98117 1.00427 0.92668 1.69896 1.23536 1.15970 1.36227 0.85190 0.78380 0.77508 0.78824 1.18439 1.18884 1.19201 1.20873 1.00671 0.99413 0.96814 1.20469 1.00527 0.93746 1.00010 1.22388 0.95480 0.91391 1.02429 1.67821 1.35738 1.02112 1.13079 0.90284 0.90566 0.85486 0.81684 0.81440 0.74948 0.88305 0.88608 0.90239 0.87731 0.86546 0.84388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 10.01 113.37 1.14 -1.26 16 2 S -0.09 -2.03 22.55 -56.49 -1.27 -3.30 16 3 C 0.04 1.23 7.00 84.84 0.59 1.83 16 4 C -0.11 -2.45 9.83 22.49 0.22 -2.23 16 5 C -0.12 -2.83 10.09 22.57 0.23 -2.60 16 6 C 0.15 4.45 5.89 38.30 0.23 4.68 16 7 N -0.66 -20.93 5.41 -179.77 -0.97 -21.90 16 8 C 0.05 1.92 5.84 38.73 0.23 2.15 16 9 C -0.12 -5.03 7.95 22.15 0.18 -4.86 16 10 C -0.21 -10.49 9.74 22.47 0.22 -10.27 16 11 C 0.07 3.61 5.55 -21.27 -0.12 3.50 16 12 C -0.50 -26.75 9.03 23.35 0.21 -26.54 16 13 H 0.07 3.79 7.89 -2.91 -0.02 3.76 16 14 C 0.04 1.76 5.16 85.21 0.44 2.20 16 15 N -0.83 -42.71 11.00 21.81 0.24 -42.47 16 16 Si 0.98 38.09 29.59 68.60 2.03 40.12 16 17 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 18 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 19 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 20 C -0.16 -7.98 8.61 22.47 0.19 -7.79 16 21 C -0.13 -5.49 9.89 22.15 0.22 -5.27 16 22 C 0.05 1.63 9.23 84.80 0.78 2.41 16 23 N -0.48 -15.46 9.41 -191.69 -1.80 -17.27 16 24 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 28 H 0.17 2.86 8.06 -2.91 -0.02 2.83 16 29 H 0.41 10.69 8.92 -92.70 -0.83 9.86 16 30 H 0.10 4.08 6.86 -2.91 -0.02 4.06 16 31 H 0.10 4.53 8.06 -2.91 -0.02 4.51 16 32 H 0.29 13.33 8.30 -92.70 -0.77 12.56 16 33 H 0.10 5.55 6.27 -2.91 -0.02 5.53 16 34 H 0.12 4.37 8.06 -2.91 -0.02 4.34 16 35 H 0.14 5.27 6.77 -2.91 -0.02 5.25 16 Total: -1.00 -59.44 314.76 3.26 -56.18 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: 0.29 Total: 32.71 kcal Atomic # 6 Polarization: -48.81 SS G_CDS: 4.75 Total: -44.06 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -2.54 Total: -81.64 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 2.03 Total: 40.12 kcal Atomic # 16 Polarization: -2.03 SS G_CDS: -1.27 Total: -3.30 kcal Total: -59.44 3.26 -56.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175652815.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.186 kcal (2) G-P(sol) polarization free energy of solvation -59.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds