Wall clock time and date at job start Tue Mar 31 2020 06:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76199 * 103.00380 * 2 1 4 4 C 1.39196 * 119.63027 * 180.02562 * 3 2 1 5 5 C 1.38188 * 119.18154 * 179.97438 * 4 3 2 6 6 C 1.39532 * 118.44602 * 359.97438 * 5 4 3 7 7 N 1.39830 * 120.40944 * 180.02562 * 6 5 4 8 8 C 1.38601 * 120.00029 * 184.35628 * 7 6 5 9 9 C 1.38847 * 120.30131 * 256.14477 * 8 7 6 10 10 C 1.38091 * 120.01796 * 180.27926 * 9 8 7 11 11 C 1.38945 * 120.63435 * 359.73998 * 10 9 8 12 12 C 1.36418 * 120.61947 * 0.02562 * 11 10 9 13 13 C 1.40748 * 119.94901 * 359.97438 * 12 11 10 14 14 C 1.40999 * 120.30939 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00143 * 154.36426 * 14 13 12 16 16 C 1.39887 * 119.99768 * 334.35643 * 14 13 12 17 17 N 1.30905 * 120.00156 * 329.26016 * 16 14 13 18 18 Si 1.86804 * 119.99772 * 149.25923 * 16 14 13 19 19 H 1.48500 * 109.46953 * 179.97438 * 18 16 14 20 20 H 1.48496 * 109.47299 * 300.00160 * 18 16 14 21 21 H 1.48506 * 109.47016 * 60.00287 * 18 16 14 22 22 C 1.38743 * 119.18221 * 0.27640 * 6 5 4 23 23 N 1.31936 * 120.74581 * 359.40628 * 22 6 5 24 24 H 1.08993 * 109.47549 * 59.99508 * 1 2 3 25 25 H 1.09000 * 109.46975 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46592 * 299.99973 * 1 2 3 27 27 H 1.08013 * 120.40589 * 359.97377 * 4 3 2 28 28 H 1.08003 * 120.77549 * 180.02562 * 5 4 3 29 29 H 0.96994 * 120.00222 * 4.36195 * 7 6 5 30 30 H 1.07995 * 119.99425 * 0.02562 * 9 8 7 31 31 H 1.07997 * 119.68121 * 179.76093 * 10 9 8 32 32 H 1.08005 * 119.69217 * 180.02562 * 11 10 9 33 33 H 1.07993 * 120.02281 * 180.02562 * 12 11 10 34 34 H 0.96996 * 119.99710 * 352.87498 * 17 16 14 35 35 H 1.08006 * 119.62864 * 179.70434 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5442 2.1151 -0.0005 5 6 3.8446 3.4639 -0.0011 6 6 2.7915 4.3794 -0.0016 7 7 3.0486 5.7538 -0.0027 8 6 1.9995 6.6551 0.0880 9 6 1.5685 7.3441 -1.0379 10 6 0.5266 8.2449 -0.9397 11 6 -0.1038 8.4684 0.2782 12 6 0.2953 7.8022 1.3997 13 6 1.3547 6.8783 1.3286 14 6 1.7739 6.1859 2.4831 15 1 2.2594 5.2257 2.3905 16 6 1.5608 6.7428 3.7485 17 7 1.5564 8.0432 3.8991 18 14 1.2827 5.6308 5.2235 19 1 1.0837 6.4609 6.4387 20 1 0.0779 4.7940 4.9924 21 1 2.4660 4.7536 5.4122 22 6 1.4863 3.9090 0.0043 23 7 1.2361 2.6136 -0.0014 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 4.3346 1.3789 -0.0005 28 1 4.8705 3.8016 -0.0019 29 1 3.9610 6.0766 -0.0670 30 1 2.0510 7.1784 -1.9897 31 1 0.1983 8.7807 -1.8181 32 1 -0.9175 9.1761 0.3375 33 1 -0.2017 7.9830 2.3413 34 1 1.8023 8.6180 3.1575 35 1 0.6657 4.6112 0.0088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175658180.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:47 Heat of formation + Delta-G solvation = 46.502647 kcal Electronic energy + Delta-G solvation = -19619.985782 eV Core-core repulsion = 16708.107723 eV Total energy + Delta-G solvation = -2911.878059 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.77413 -38.06302 -35.01491 -34.02826 -31.85557 -29.91697 -29.55081 -28.71652 -27.64331 -25.10697 -23.28773 -22.63956 -21.18269 -20.41043 -18.06221 -17.62754 -16.92543 -16.42277 -15.09902 -14.71278 -14.61954 -14.59926 -14.05850 -13.84341 -13.74910 -13.20806 -13.03170 -12.94809 -12.53516 -12.29084 -12.17164 -11.71762 -11.41302 -11.11352 -10.93310 -10.67600 -10.46984 -10.27412 -10.02553 -9.67228 -9.31701 -9.17596 -9.05956 -8.14718 -7.82166 -7.70973 -7.36428 -6.54199 -4.59122 1.65976 1.77617 1.88268 2.53688 2.58986 2.65930 3.09380 3.18721 3.30144 3.90003 4.14486 4.28272 4.37245 5.09639 5.23967 5.29475 5.33735 5.39943 5.49996 5.60502 5.95921 5.97168 6.05790 6.10536 6.30197 6.39163 6.52100 6.75372 6.84694 6.99097 7.14491 7.34267 7.57067 7.63986 7.76848 7.95448 7.96373 8.13089 8.29343 8.40270 8.64438 8.77308 9.83177 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.014097 B = 0.006040 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.776428 B = 4634.506895 C = 5645.211138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.117 6.117 3 C 0.039 3.961 4 C -0.098 4.098 5 C -0.159 4.159 6 C 0.192 3.808 7 N -0.647 5.647 8 C -0.021 4.021 9 C -0.069 4.069 10 C -0.255 4.255 11 C -0.078 4.078 12 C -0.209 4.209 13 C 0.102 3.898 14 C -0.502 4.502 15 H 0.079 0.921 16 C 0.045 3.955 17 N -0.778 5.778 18 Si 1.054 2.946 19 H -0.272 1.272 20 H -0.271 1.271 21 H -0.274 1.274 22 C 0.061 3.939 23 N -0.450 5.450 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.129 0.871 28 H 0.131 0.869 29 H 0.394 0.606 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.299 0.701 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.819 -8.177 -4.518 9.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S 0.118 5.882 3 C -0.210 4.210 4 C -0.124 4.124 5 C -0.191 4.191 6 C 0.082 3.918 7 N -0.266 5.266 8 C -0.114 4.114 9 C -0.088 4.088 10 C -0.275 4.275 11 C -0.097 4.097 12 C -0.228 4.228 13 C 0.097 3.903 14 C -0.529 4.529 15 H 0.097 0.903 16 C -0.179 4.179 17 N -0.399 5.399 18 Si 0.877 3.123 19 H -0.197 1.197 20 H -0.197 1.197 21 H -0.200 1.200 22 C -0.106 4.106 23 N -0.161 5.161 24 H 0.101 0.899 25 H 0.113 0.887 26 H 0.103 0.897 27 H 0.147 0.853 28 H 0.149 0.851 29 H 0.229 0.771 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.112 0.888 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.095 -9.268 -2.875 9.766 hybrid contribution 0.749 1.722 -1.640 2.493 sum 1.843 -7.547 -4.515 8.986 Atomic orbital electron populations 1.23302 0.94025 1.05146 1.06536 1.84983 1.07687 1.01526 1.93985 1.22277 0.91925 0.97019 1.09754 1.21209 0.95350 0.95616 1.00221 1.20847 0.98312 0.92103 1.07851 1.19009 0.94471 0.85512 0.92832 1.41136 1.07671 1.00419 1.77421 1.17240 0.97682 1.02478 0.93990 1.20790 0.95911 0.96459 0.95675 1.20153 1.03495 1.06980 0.96891 1.20423 0.98018 0.97930 0.93316 1.20816 1.00405 1.03801 0.97824 1.17782 0.90085 0.90459 0.91951 1.20425 1.34595 1.06211 0.91625 0.90281 1.27017 0.91221 0.97175 1.02484 1.70496 1.27026 1.05094 1.37307 0.83783 0.78440 0.75444 0.74600 1.19689 1.19669 1.19960 1.22278 0.94956 0.90896 1.02474 1.67753 1.34745 1.02184 1.11392 0.89879 0.88712 0.89718 0.85286 0.85135 0.77095 0.89054 0.89051 0.89124 0.87749 0.88776 0.82500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.53 10.01 101.05 1.01 -0.52 16 2 S -0.12 -1.71 22.55 -107.50 -2.42 -4.13 16 3 C 0.04 0.69 7.00 -16.94 -0.12 0.58 16 4 C -0.10 -1.57 9.83 -39.24 -0.39 -1.96 16 5 C -0.16 -2.61 10.04 -39.12 -0.39 -3.00 16 6 C 0.19 3.64 5.44 -83.54 -0.45 3.19 16 7 N -0.65 -12.41 4.86 -7.91 -0.04 -12.44 16 8 C -0.02 -0.45 4.60 -83.30 -0.38 -0.83 16 9 C -0.07 -1.42 9.96 -39.41 -0.39 -1.81 16 10 C -0.26 -5.27 10.03 -39.37 -0.40 -5.66 16 11 C -0.08 -1.69 9.96 -39.98 -0.40 -2.09 16 12 C -0.21 -4.95 8.12 -39.29 -0.32 -5.27 16 13 C 0.10 2.44 4.77 -106.63 -0.51 1.94 16 14 C -0.50 -12.40 8.33 -37.92 -0.32 -12.71 16 15 H 0.08 2.01 6.61 -52.49 -0.35 1.66 16 16 C 0.05 1.10 4.78 -17.33 -0.08 1.01 16 17 N -0.78 -19.45 12.38 55.55 0.69 -18.77 16 18 Si 1.05 21.33 30.03 -169.99 -5.10 16.23 16 19 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 22 C 0.06 1.25 10.10 -17.32 -0.17 1.08 16 23 N -0.45 -8.78 9.41 -11.94 -0.11 -8.89 16 24 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.09 0.93 8.14 -51.92 -0.42 0.50 16 26 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16 27 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 28 H 0.13 1.76 8.06 -52.48 -0.42 1.34 16 29 H 0.39 6.68 8.85 -40.82 -0.36 6.32 16 30 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 31 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 33 H 0.10 2.58 6.72 -52.49 -0.35 2.22 16 34 H 0.30 7.64 7.23 -40.82 -0.30 7.34 16 35 H 0.16 3.49 6.73 -52.48 -0.35 3.14 16 LS Contribution 314.37 15.07 4.74 4.74 Total: -1.00 -25.86 314.37 -9.45 -35.31 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -3.89 Total: 14.03 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: -3.31 Total: -26.06 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.54 Total: -40.10 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.10 Total: 16.23 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.42 Total: -4.13 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -25.86 -9.45 -35.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175658180.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.809 kcal (2) G-P(sol) polarization free energy of solvation -25.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds