Wall clock time and date at job start Tue Mar 31 2020 06:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76199 * 103.00380 * 2 1 4 4 C 1.39196 * 119.63027 * 180.02562 * 3 2 1 5 5 C 1.38188 * 119.18154 * 179.97438 * 4 3 2 6 6 C 1.39532 * 118.44602 * 359.97438 * 5 4 3 7 7 N 1.39830 * 120.40944 * 180.02562 * 6 5 4 8 8 C 1.38601 * 120.00029 * 184.35628 * 7 6 5 9 9 C 1.38847 * 120.30131 * 256.14477 * 8 7 6 10 10 C 1.38091 * 120.01796 * 180.27926 * 9 8 7 11 11 C 1.38945 * 120.63435 * 359.73998 * 10 9 8 12 12 C 1.36418 * 120.61947 * 0.02562 * 11 10 9 13 13 C 1.40748 * 119.94901 * 359.97438 * 12 11 10 14 14 C 1.40999 * 120.30939 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00143 * 154.36426 * 14 13 12 16 16 C 1.39887 * 119.99768 * 334.35643 * 14 13 12 17 17 N 1.30905 * 120.00156 * 329.26016 * 16 14 13 18 18 Si 1.86804 * 119.99772 * 149.25923 * 16 14 13 19 19 H 1.48500 * 109.46953 * 179.97438 * 18 16 14 20 20 H 1.48496 * 109.47299 * 300.00160 * 18 16 14 21 21 H 1.48506 * 109.47016 * 60.00287 * 18 16 14 22 22 C 1.38743 * 119.18221 * 0.27640 * 6 5 4 23 23 N 1.31936 * 120.74581 * 359.40628 * 22 6 5 24 24 H 1.08993 * 109.47549 * 59.99508 * 1 2 3 25 25 H 1.09000 * 109.46975 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46592 * 299.99973 * 1 2 3 27 27 H 1.08013 * 120.40589 * 359.97377 * 4 3 2 28 28 H 1.08003 * 120.77549 * 180.02562 * 5 4 3 29 29 H 0.96994 * 120.00222 * 4.36195 * 7 6 5 30 30 H 1.07995 * 119.99425 * 0.02562 * 9 8 7 31 31 H 1.07997 * 119.68121 * 179.76093 * 10 9 8 32 32 H 1.08005 * 119.69217 * 180.02562 * 11 10 9 33 33 H 1.07993 * 120.02281 * 180.02562 * 12 11 10 34 34 H 0.96996 * 119.99710 * 352.87498 * 17 16 14 35 35 H 1.08006 * 119.62864 * 179.70434 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5442 2.1151 -0.0005 5 6 3.8446 3.4639 -0.0011 6 6 2.7915 4.3794 -0.0016 7 7 3.0486 5.7538 -0.0027 8 6 1.9995 6.6551 0.0880 9 6 1.5685 7.3441 -1.0379 10 6 0.5266 8.2449 -0.9397 11 6 -0.1038 8.4684 0.2782 12 6 0.2953 7.8022 1.3997 13 6 1.3547 6.8783 1.3286 14 6 1.7739 6.1859 2.4831 15 1 2.2594 5.2257 2.3905 16 6 1.5608 6.7428 3.7485 17 7 1.5564 8.0432 3.8991 18 14 1.2827 5.6308 5.2235 19 1 1.0837 6.4609 6.4387 20 1 0.0779 4.7940 4.9924 21 1 2.4660 4.7536 5.4122 22 6 1.4863 3.9090 0.0043 23 7 1.2361 2.6136 -0.0014 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 4.3346 1.3789 -0.0005 28 1 4.8705 3.8016 -0.0019 29 1 3.9610 6.0766 -0.0670 30 1 2.0510 7.1784 -1.9897 31 1 0.1983 8.7807 -1.8181 32 1 -0.9175 9.1761 0.3375 33 1 -0.2017 7.9830 2.3413 34 1 1.8023 8.6180 3.1575 35 1 0.6657 4.6112 0.0088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175658180.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:47 Heat of formation + Delta-G solvation = 34.131115 kcal Electronic energy + Delta-G solvation = -19620.522251 eV Core-core repulsion = 16708.107723 eV Total energy + Delta-G solvation = -2912.414529 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.22661 -39.70858 -36.57409 -35.78968 -33.23975 -31.42821 -31.31286 -29.82945 -29.16869 -26.87510 -24.70248 -24.09249 -22.93656 -22.04503 -19.83654 -18.92907 -18.39531 -17.94633 -16.71638 -16.30937 -16.23064 -15.92338 -15.66411 -15.19559 -15.08564 -14.63867 -14.32560 -14.29688 -14.20263 -13.93500 -13.56068 -13.13851 -12.93723 -12.77320 -12.53864 -12.28439 -12.03747 -11.73273 -11.45781 -11.35876 -10.86117 -10.65290 -10.57580 -9.66848 -9.58802 -9.28036 -9.14882 -7.91051 -6.43229 0.27163 0.38838 0.69086 0.81770 0.90968 1.42868 1.43201 1.55679 1.70976 2.23165 2.58852 2.68165 2.86620 3.47306 3.72851 4.01902 4.12486 4.26016 4.33444 4.34663 4.39580 4.40952 4.65738 4.78201 4.95079 4.95609 4.99437 5.12303 5.17535 5.37028 5.50270 5.62560 5.76925 5.85876 5.98712 6.17422 6.28563 6.54456 6.67346 6.84518 6.96197 7.12111 7.96072 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.014097 B = 0.006040 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.776428 B = 4634.506895 C = 5645.211138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.095 6.095 3 C 0.024 3.976 4 C -0.096 4.096 5 C -0.147 4.147 6 C 0.178 3.822 7 N -0.650 5.650 8 C -0.009 4.009 9 C -0.077 4.077 10 C -0.245 4.245 11 C -0.084 4.084 12 C -0.231 4.231 13 C 0.081 3.919 14 C -0.527 4.527 15 H 0.066 0.934 16 C 0.015 3.985 17 N -0.800 5.800 18 Si 1.096 2.904 19 H -0.266 1.266 20 H -0.272 1.272 21 H -0.262 1.262 22 C 0.035 3.965 23 N -0.467 5.467 24 H 0.077 0.923 25 H 0.128 0.872 26 H 0.072 0.928 27 H 0.164 0.836 28 H 0.164 0.836 29 H 0.405 0.595 30 H 0.116 0.884 31 H 0.122 0.878 32 H 0.113 0.887 33 H 0.084 0.916 34 H 0.285 0.715 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.823 -9.821 -5.635 11.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S 0.141 5.859 3 C -0.226 4.226 4 C -0.121 4.121 5 C -0.178 4.178 6 C 0.068 3.932 7 N -0.272 5.272 8 C -0.103 4.103 9 C -0.097 4.097 10 C -0.265 4.265 11 C -0.103 4.103 12 C -0.251 4.251 13 C 0.077 3.923 14 C -0.555 4.555 15 H 0.084 0.916 16 C -0.204 4.204 17 N -0.422 5.422 18 Si 0.915 3.085 19 H -0.191 1.191 20 H -0.197 1.197 21 H -0.187 1.187 22 C -0.131 4.131 23 N -0.179 5.179 24 H 0.096 0.904 25 H 0.147 0.853 26 H 0.091 0.909 27 H 0.182 0.818 28 H 0.181 0.819 29 H 0.242 0.758 30 H 0.134 0.866 31 H 0.140 0.860 32 H 0.131 0.869 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.107 -10.904 -4.009 11.807 hybrid contribution 0.417 2.110 -1.505 2.625 sum 2.524 -8.793 -5.513 10.681 Atomic orbital electron populations 1.23396 0.92812 1.07080 1.05656 1.84862 1.09009 0.98605 1.93464 1.22966 0.92628 0.98422 1.08570 1.21655 0.95648 0.96210 0.98624 1.21250 0.99141 0.91849 1.05549 1.19065 0.94685 0.85601 0.93805 1.41023 1.07527 1.00355 1.78261 1.17399 0.97476 1.01966 0.93493 1.21115 0.96056 0.96185 0.96339 1.20568 1.02460 1.06082 0.97397 1.20701 0.98601 0.97921 0.93031 1.20795 1.01130 1.05248 0.97942 1.18063 0.90497 0.90787 0.92959 1.20368 1.36577 1.06088 0.92464 0.91595 1.28030 0.90292 0.97577 1.04529 1.70588 1.29546 1.05505 1.36561 0.83251 0.78645 0.74245 0.72370 1.19075 1.19710 1.18694 1.21924 0.94935 0.91164 1.05044 1.67705 1.35893 1.02072 1.12258 0.90427 0.85349 0.90917 0.81849 0.81861 0.75841 0.86624 0.86023 0.86893 0.89759 0.90282 0.85540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.84 10.01 113.37 1.14 -1.71 16 2 S -0.09 -2.54 22.55 -56.49 -1.27 -3.81 16 3 C 0.02 0.82 7.00 84.83 0.59 1.41 16 4 C -0.10 -2.81 9.83 22.49 0.22 -2.59 16 5 C -0.15 -4.47 10.04 22.57 0.23 -4.24 16 6 C 0.18 6.66 5.44 38.30 0.21 6.86 16 7 N -0.65 -24.70 4.86 -178.95 -0.87 -25.57 16 8 C -0.01 -0.41 4.60 39.04 0.18 -0.23 16 9 C -0.08 -3.10 9.96 22.38 0.22 -2.88 16 10 C -0.25 -9.72 10.03 22.40 0.22 -9.50 16 11 C -0.08 -3.61 9.96 22.01 0.22 -3.39 16 12 C -0.23 -11.35 8.12 22.46 0.18 -11.17 16 13 C 0.08 4.03 4.77 -21.16 -0.10 3.93 16 14 C -0.53 -27.06 8.33 23.35 0.19 -26.86 16 15 H 0.07 3.47 6.61 -2.91 -0.02 3.45 16 16 C 0.01 0.74 4.78 85.23 0.41 1.15 16 17 N -0.80 -41.62 12.38 21.82 0.27 -41.35 16 18 Si 1.10 44.04 30.03 68.60 2.06 46.10 16 19 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 20 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 21 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 22 C 0.03 1.46 10.10 84.80 0.86 2.31 16 23 N -0.47 -18.29 9.41 -191.69 -1.80 -20.09 16 24 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.16 3.63 8.06 -2.90 -0.02 3.61 16 28 H 0.16 3.82 8.06 -2.91 -0.02 3.80 16 29 H 0.40 13.34 8.85 -92.71 -0.82 12.52 16 30 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 31 H 0.12 4.08 8.06 -2.91 -0.02 4.05 16 32 H 0.11 4.24 8.06 -2.91 -0.02 4.21 16 33 H 0.08 4.40 6.72 -2.91 -0.02 4.38 16 34 H 0.29 15.31 7.23 -92.71 -0.67 14.64 16 35 H 0.13 5.95 6.73 -2.91 -0.02 5.93 16 Total: -1.00 -57.58 314.37 3.55 -54.03 By element: Atomic # 1 Polarization: 37.20 SS G_CDS: 0.40 Total: 37.59 kcal Atomic # 6 Polarization: -51.67 SS G_CDS: 4.77 Total: -46.90 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -2.40 Total: -87.01 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.06 Total: 46.10 kcal Atomic # 16 Polarization: -2.54 SS G_CDS: -1.27 Total: -3.81 kcal Total: -57.58 3.55 -54.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175658180.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.158 kcal (2) G-P(sol) polarization free energy of solvation -57.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds