Wall clock time and date at job start Tue Mar 31 2020 06:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46971 * 2 1 4 4 C 1.52999 * 109.47120 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.46887 * 180.02562 * 4 3 2 6 6 C 1.36787 * 119.99979 * 90.00179 * 5 4 3 7 7 H 1.08004 * 120.00030 * 217.88566 * 6 5 4 8 8 C 1.39118 * 119.99897 * 38.16670 * 6 5 4 9 9 N 1.31312 * 120.00021 * 18.96455 * 8 6 5 10 10 Si 1.86802 * 119.99620 * 198.96742 * 8 6 5 11 11 H 1.48495 * 109.47152 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47171 * 119.99752 * 10 8 6 13 13 H 1.48501 * 109.46744 * 239.99711 * 10 8 6 14 14 C 1.34774 * 120.00264 * 269.99772 * 5 4 3 15 15 O 1.21546 * 119.99867 * 5.32691 * 14 5 4 16 16 C 1.48175 * 120.00392 * 185.32091 * 14 5 4 17 17 N 1.31099 * 126.93446 * 5.02287 * 16 14 5 18 18 O 1.20904 * 111.46185 * 179.79173 * 17 16 14 19 19 C 1.34051 * 111.85079 * 0.48627 * 18 17 16 20 20 Cl 1.73599 * 126.67678 * 179.72420 * 19 18 17 21 21 C 1.35517 * 106.65027 * 359.70804 * 19 18 17 22 22 C 1.50691 * 128.04561 * 180.02562 * 21 19 18 23 23 H 1.09007 * 109.46937 * 59.99998 * 1 2 3 24 24 H 1.09003 * 109.47113 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47493 * 299.99862 * 1 2 3 26 26 H 1.08993 * 109.47720 * 240.00076 * 2 1 3 27 27 H 1.09000 * 109.47171 * 119.99687 * 2 1 3 28 28 H 1.09002 * 109.46900 * 59.99774 * 3 2 1 29 29 H 1.08994 * 109.47257 * 300.00111 * 3 2 1 30 30 H 1.09002 * 109.47015 * 59.99727 * 4 3 2 31 31 H 1.09002 * 109.46690 * 300.00119 * 4 3 2 32 32 H 0.97003 * 119.99983 * 184.54205 * 9 8 6 33 33 H 1.08997 * 109.47085 * 269.94875 * 22 21 19 34 34 H 1.09007 * 109.47726 * 29.95160 * 22 21 19 35 35 H 1.09000 * 109.47236 * 149.95101 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8238 0.0013 6 6 4.2856 3.4683 1.1862 7 1 4.0471 4.5170 1.2850 8 6 4.8297 2.7743 2.2622 9 7 5.4627 1.6416 2.0605 10 14 4.6596 3.4538 3.9939 11 1 3.9094 4.7346 3.9516 12 1 3.9261 2.4775 4.8389 13 1 6.0088 3.6897 4.5677 14 6 4.2833 3.4595 -1.1656 15 8 3.9904 2.9231 -2.2162 16 6 4.8877 4.8124 -1.1677 17 7 5.3373 5.4760 -0.1303 18 8 5.7768 6.5554 -0.4522 19 6 5.6681 6.7650 -1.7717 20 17 6.1685 8.1817 -2.6413 21 6 5.0918 5.6557 -2.2950 22 6 4.7478 5.3795 -3.7359 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.9337 0.9286 -0.8891 31 1 3.9329 0.9289 0.8909 32 1 5.7844 1.1247 2.8156 33 1 3.7354 5.7277 -3.9409 34 1 5.4504 5.9032 -4.3841 35 1 4.8086 4.3078 -3.9250 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199674011.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:36 Heat of formation + Delta-G solvation = 18.381069 kcal Electronic energy + Delta-G solvation = -20890.576783 eV Core-core repulsion = 17532.293561 eV Total energy + Delta-G solvation = -3358.283223 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.47600 -38.65449 -36.99698 -35.58070 -34.09706 -34.00299 -31.86479 -31.29681 -28.55876 -27.69276 -25.13135 -24.30757 -22.21940 -21.14034 -20.50481 -19.51255 -18.26359 -17.37424 -16.23577 -15.96095 -14.90051 -14.76608 -14.48769 -14.07470 -13.91332 -13.28430 -13.09943 -12.92265 -12.81043 -12.29661 -12.17133 -12.09567 -12.02135 -11.61609 -11.48684 -11.28152 -11.07582 -10.70306 -10.58490 -10.52423 -10.35414 -10.18002 -9.78520 -9.55761 -9.24634 -8.82664 -8.75399 -7.65752 -6.47449 -4.17404 1.35760 1.65936 2.17741 3.10130 3.19198 3.24485 3.91786 4.08742 4.18099 4.39368 4.73550 4.97969 5.27697 5.40528 5.45500 5.51346 5.62620 5.76506 5.93507 6.02347 6.12092 6.21557 6.22113 6.33198 6.36807 6.49989 6.63040 6.65201 6.77844 7.03063 7.28767 7.42336 7.75019 8.29138 8.58691 8.95607 9.30320 9.71946 10.50892 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.006070 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.019208 B = 4611.424074 C = 6047.643688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.127 4.127 4 C 0.112 3.888 5 N -0.407 5.407 6 C -0.326 4.326 7 H 0.103 0.897 8 C 0.049 3.951 9 N -0.851 5.851 10 Si 0.916 3.084 11 H -0.265 1.265 12 H -0.278 1.278 13 H -0.279 1.279 14 C 0.526 3.474 15 O -0.592 6.592 16 C 0.015 3.985 17 N -0.278 5.278 18 O 0.109 5.891 19 C -0.034 4.034 20 Cl 0.027 6.973 21 C -0.128 4.128 22 C -0.077 4.077 23 H 0.050 0.950 24 H 0.047 0.953 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.109 0.891 32 H 0.272 0.728 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.394 5.292 -4.988 7.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.166 4.166 4 C -0.011 4.011 5 N -0.123 5.123 6 C -0.455 4.455 7 H 0.120 0.880 8 C -0.158 4.158 9 N -0.487 5.487 10 Si 0.741 3.259 11 H -0.189 1.189 12 H -0.204 1.204 13 H -0.204 1.204 14 C 0.314 3.686 15 O -0.477 6.477 16 C -0.144 4.144 17 N 0.019 4.981 18 O 0.036 5.964 19 C -0.123 4.123 20 Cl 0.055 6.945 21 C -0.133 4.133 22 C -0.134 4.134 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.127 0.873 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.287 4.708 -4.164 6.688 hybrid contribution 0.068 0.568 0.228 0.616 sum -2.219 5.276 -3.936 6.947 Atomic orbital electron populations 1.21756 0.96553 1.00727 1.01528 1.21423 0.95066 0.97546 1.01670 1.21884 0.97324 0.95731 1.01636 1.21565 0.91668 0.83891 1.03955 1.43414 1.52368 1.12160 1.04312 1.19792 1.40628 0.96988 0.88059 0.88011 1.25415 0.93259 0.96393 1.00753 1.69900 1.31453 1.15035 1.32322 0.86042 0.78439 0.79495 0.81886 1.18868 1.20369 1.20441 1.17117 0.83318 0.83441 0.84766 1.90602 1.58343 1.67319 1.31464 1.23364 1.04265 0.98724 0.88021 1.74840 1.10753 0.91783 1.20766 1.85006 1.60546 1.29706 1.21161 1.24364 1.08512 0.93270 0.86152 1.98388 1.90018 1.35860 1.70273 1.20835 1.02460 0.91366 0.98647 1.20203 1.01208 1.04600 0.87372 0.93049 0.93373 0.93010 0.92327 0.92190 0.92101 0.92707 0.92405 0.87294 0.91802 0.90808 0.91599 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.12 -1.94 5.93 -26.73 -0.16 -2.10 16 3 C -0.13 -2.53 5.54 -26.73 -0.15 -2.68 16 4 C 0.11 2.61 4.96 -4.05 -0.02 2.59 16 5 N -0.41 -10.34 2.51 -115.77 -0.29 -10.63 16 6 C -0.33 -8.41 7.82 -15.01 -0.12 -8.52 16 7 H 0.10 2.66 6.29 -52.48 -0.33 2.33 16 8 C 0.05 1.24 5.01 -17.45 -0.09 1.16 16 9 N -0.85 -22.17 11.34 55.50 0.63 -21.54 16 10 Si 0.92 19.79 29.60 -169.99 -5.03 14.76 16 11 H -0.26 -5.69 7.11 56.52 0.40 -5.28 16 12 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 13 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 14 C 0.53 13.22 7.64 -12.18 -0.09 13.13 16 15 O -0.59 -15.17 14.94 5.33 0.08 -15.09 16 16 C 0.02 0.35 6.87 -82.56 -0.57 -0.22 16 17 N -0.28 -6.27 9.14 33.30 0.30 -5.97 16 18 O 0.11 2.11 11.18 17.15 0.19 2.30 16 19 C -0.03 -0.58 8.10 29.76 0.24 -0.34 16 20 Cl 0.03 0.34 29.22 -51.86 -1.52 -1.18 16 21 C -0.13 -2.39 6.35 -104.06 -0.66 -3.05 16 22 C -0.08 -1.20 9.96 36.00 0.36 -0.84 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.06 1.38 7.50 -51.93 -0.39 0.99 16 31 H 0.11 2.67 5.46 -51.93 -0.28 2.39 16 32 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 1.65 6.80 -51.93 -0.35 1.29 16 LS Contribution 314.99 15.07 4.75 4.75 Total: -1.00 -27.90 314.99 -6.07 -33.96 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -4.30 Total: 1.17 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -0.88 Total: -2.55 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.64 Total: -38.14 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.27 Total: -12.79 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.76 kcal Atomic # 17 Polarization: 0.34 SS G_CDS: -1.52 Total: -1.18 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.90 -6.07 -33.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199674011.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.345 kcal (2) G-P(sol) polarization free energy of solvation -27.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds