Wall clock time and date at job start Tue Mar 31 2020 06:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46971 * 2 1 4 4 C 1.52999 * 109.47120 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.46887 * 180.02562 * 4 3 2 6 6 C 1.36787 * 119.99979 * 90.00179 * 5 4 3 7 7 H 1.08004 * 120.00030 * 217.88566 * 6 5 4 8 8 C 1.39118 * 119.99897 * 38.16670 * 6 5 4 9 9 N 1.31312 * 120.00021 * 18.96455 * 8 6 5 10 10 Si 1.86802 * 119.99620 * 198.96742 * 8 6 5 11 11 H 1.48495 * 109.47152 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47171 * 119.99752 * 10 8 6 13 13 H 1.48501 * 109.46744 * 239.99711 * 10 8 6 14 14 C 1.34774 * 120.00264 * 269.99772 * 5 4 3 15 15 O 1.21546 * 119.99867 * 5.32691 * 14 5 4 16 16 C 1.48175 * 120.00392 * 185.32091 * 14 5 4 17 17 N 1.31099 * 126.93446 * 5.02287 * 16 14 5 18 18 O 1.20904 * 111.46185 * 179.79173 * 17 16 14 19 19 C 1.34051 * 111.85079 * 0.48627 * 18 17 16 20 20 Cl 1.73599 * 126.67678 * 179.72420 * 19 18 17 21 21 C 1.35517 * 106.65027 * 359.70804 * 19 18 17 22 22 C 1.50691 * 128.04561 * 180.02562 * 21 19 18 23 23 H 1.09007 * 109.46937 * 59.99998 * 1 2 3 24 24 H 1.09003 * 109.47113 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47493 * 299.99862 * 1 2 3 26 26 H 1.08993 * 109.47720 * 240.00076 * 2 1 3 27 27 H 1.09000 * 109.47171 * 119.99687 * 2 1 3 28 28 H 1.09002 * 109.46900 * 59.99774 * 3 2 1 29 29 H 1.08994 * 109.47257 * 300.00111 * 3 2 1 30 30 H 1.09002 * 109.47015 * 59.99727 * 4 3 2 31 31 H 1.09002 * 109.46690 * 300.00119 * 4 3 2 32 32 H 0.97003 * 119.99983 * 184.54205 * 9 8 6 33 33 H 1.08997 * 109.47085 * 269.94875 * 22 21 19 34 34 H 1.09007 * 109.47726 * 29.95160 * 22 21 19 35 35 H 1.09000 * 109.47236 * 149.95101 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8238 0.0013 6 6 4.2856 3.4683 1.1862 7 1 4.0471 4.5170 1.2850 8 6 4.8297 2.7743 2.2622 9 7 5.4627 1.6416 2.0605 10 14 4.6596 3.4538 3.9939 11 1 3.9094 4.7346 3.9516 12 1 3.9261 2.4775 4.8389 13 1 6.0088 3.6897 4.5677 14 6 4.2833 3.4595 -1.1656 15 8 3.9904 2.9231 -2.2162 16 6 4.8877 4.8124 -1.1677 17 7 5.3373 5.4760 -0.1303 18 8 5.7768 6.5554 -0.4522 19 6 5.6681 6.7650 -1.7717 20 17 6.1685 8.1817 -2.6413 21 6 5.0918 5.6557 -2.2950 22 6 4.7478 5.3795 -3.7359 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.9337 0.9286 -0.8891 31 1 3.9329 0.9289 0.8909 32 1 5.7844 1.1247 2.8156 33 1 3.7354 5.7277 -3.9409 34 1 5.4504 5.9032 -4.3841 35 1 4.8086 4.3078 -3.9250 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199674011.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:36 Heat of formation + Delta-G solvation = 3.769253 kcal Electronic energy + Delta-G solvation = -20891.210399 eV Core-core repulsion = 17532.293561 eV Total energy + Delta-G solvation = -3358.916839 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.10738 -40.55189 -38.23095 -37.36610 -35.75463 -35.49543 -33.70214 -32.94901 -30.13378 -29.09575 -27.06316 -25.93511 -23.81632 -22.66977 -21.99644 -21.32892 -19.99385 -19.00846 -18.01055 -17.73470 -16.73803 -16.31777 -16.22160 -15.72415 -15.58982 -14.85106 -14.51215 -14.40354 -14.24005 -13.86520 -13.69659 -13.54608 -13.31793 -13.14430 -12.99431 -12.83525 -12.78437 -12.20607 -12.12203 -12.00606 -11.94456 -11.78227 -11.44113 -11.20043 -11.12497 -10.71932 -10.19184 -9.59703 -8.39214 -6.16425 0.02633 0.14512 0.53743 1.38792 1.41775 1.54551 2.18594 2.29331 2.44114 2.79760 2.94121 3.29615 3.68738 3.92890 4.05524 4.12574 4.25406 4.32394 4.48623 4.62671 4.74585 4.82482 4.84962 4.86640 4.98281 5.04714 5.17088 5.28541 5.34934 5.41141 5.43184 5.53700 5.84770 6.33678 6.92245 7.08899 7.38650 7.78520 8.60384 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.006070 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.019208 B = 4611.424074 C = 6047.643688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.114 4.114 4 C 0.113 3.887 5 N -0.420 5.420 6 C -0.340 4.340 7 H 0.095 0.905 8 C 0.013 3.987 9 N -0.881 5.881 10 Si 0.977 3.023 11 H -0.263 1.263 12 H -0.266 1.266 13 H -0.279 1.279 14 C 0.514 3.486 15 O -0.607 6.607 16 C -0.020 4.020 17 N -0.304 5.304 18 O 0.123 5.877 19 C -0.021 4.021 20 Cl 0.076 6.924 21 C -0.132 4.132 22 C -0.073 4.073 23 H 0.052 0.948 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.097 0.903 32 H 0.276 0.724 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.728 6.630 -5.145 8.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C -0.153 4.153 4 C -0.009 4.009 5 N -0.137 5.137 6 C -0.469 4.469 7 H 0.112 0.888 8 C -0.192 4.192 9 N -0.518 5.518 10 Si 0.800 3.200 11 H -0.187 1.187 12 H -0.191 1.191 13 H -0.204 1.204 14 C 0.302 3.698 15 O -0.494 6.494 16 C -0.177 4.177 17 N -0.005 5.005 18 O 0.046 5.954 19 C -0.110 4.110 20 Cl 0.104 6.896 21 C -0.138 4.138 22 C -0.129 4.129 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.115 0.885 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.640 6.013 -4.316 7.859 hybrid contribution 0.271 0.304 0.142 0.432 sum -2.369 6.318 -4.174 7.934 Atomic orbital electron populations 1.21713 0.94148 1.02395 1.01771 1.21403 0.97116 0.94807 1.01936 1.21760 0.94789 0.98148 1.00582 1.21566 0.93839 0.83115 1.02399 1.43659 1.52768 1.12736 1.04495 1.19847 1.41501 0.96961 0.88555 0.88766 1.26170 0.92587 0.96578 1.03847 1.69970 1.32193 1.16119 1.33490 0.85132 0.78288 0.79064 0.77545 1.18707 1.19109 1.20442 1.17537 0.83093 0.84563 0.84570 1.90560 1.58934 1.68155 1.31780 1.23333 1.05855 0.98615 0.89939 1.74795 1.11351 0.92742 1.21628 1.84936 1.59490 1.28439 1.22567 1.24549 1.06918 0.94426 0.85115 1.98415 1.89386 1.32926 1.68843 1.21132 1.02520 0.91046 0.99112 1.20271 1.03045 1.03616 0.85999 0.92888 0.90988 0.92726 0.92068 0.91947 0.92781 0.93898 0.93940 0.88548 0.91369 0.89334 0.88242 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.91 71.98 0.71 -2.99 16 2 C -0.11 -3.69 5.93 30.60 0.18 -3.51 16 3 C -0.11 -4.65 5.54 30.60 0.17 -4.48 16 4 C 0.11 5.50 4.96 86.38 0.43 5.93 16 5 N -0.42 -22.18 2.51 -638.48 -1.60 -23.79 16 6 C -0.34 -18.02 7.82 84.13 0.66 -17.37 16 7 H 0.09 5.06 6.29 -2.91 -0.02 5.04 16 8 C 0.01 0.66 5.01 84.98 0.43 1.08 16 9 N -0.88 -46.84 11.34 21.69 0.25 -46.59 16 10 Si 0.98 40.71 29.60 68.60 2.03 42.74 16 11 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 12 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 13 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 14 C 0.51 26.77 7.64 86.88 0.66 27.43 16 15 O -0.61 -32.24 14.94 -3.86 -0.06 -32.30 16 16 C -0.02 -0.92 6.87 42.89 0.29 -0.63 16 17 N -0.30 -13.88 9.14 -49.39 -0.45 -14.34 16 18 O 0.12 4.67 11.18 71.55 0.80 5.47 16 19 C -0.02 -0.67 8.10 67.19 0.54 -0.12 16 20 Cl 0.08 1.70 29.22 -2.72 -0.08 1.62 16 21 C -0.13 -4.85 6.35 -19.50 -0.12 -4.98 16 22 C -0.07 -2.16 9.96 71.23 0.71 -1.45 16 23 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 24 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.04 2.12 7.50 -2.39 -0.02 2.11 16 31 H 0.10 4.91 5.46 -2.39 -0.01 4.90 16 32 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 33 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 35 H 0.07 2.48 6.80 -2.39 -0.02 2.47 16 Total: -1.00 -61.64 314.99 6.66 -54.98 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 1.11 Total: 13.30 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 4.67 Total: -1.08 kcal Atomic # 7 Polarization: -82.90 SS G_CDS: -1.81 Total: -84.71 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: 0.74 Total: -26.84 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Atomic # 17 Polarization: 1.70 SS G_CDS: -0.08 Total: 1.62 kcal Total: -61.64 6.66 -54.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199674011.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.746 kcal (2) G-P(sol) polarization free energy of solvation -61.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds