Wall clock time and date at job start Tue Mar 31 2020 06:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47259 * 2 1 4 4 C 1.37904 * 119.92900 * 99.99924 * 3 2 1 5 5 C 1.39655 * 119.86000 * 180.02562 * 4 3 2 6 6 C 1.47849 * 120.13201 * 180.02562 * 5 4 3 7 7 C 1.39168 * 120.34061 * 309.97483 * 6 5 4 8 8 C 1.38074 * 119.98741 * 180.02562 * 7 6 5 9 9 C 1.38930 * 120.67416 * 0.02562 * 8 7 6 10 10 C 1.36435 * 120.69025 * 0.02562 * 9 8 7 11 11 C 1.40760 * 119.98415 * 359.67464 * 10 9 8 12 12 C 1.40875 * 120.33338 * 180.32593 * 11 10 9 13 13 H 1.07989 * 119.99766 * 153.64990 * 12 11 10 14 14 C 1.40068 * 119.99534 * 333.64928 * 12 11 10 15 15 N 1.30777 * 120.00442 * 343.18973 * 14 12 11 16 16 Si 1.86803 * 119.99636 * 163.19456 * 14 12 11 17 17 H 1.48491 * 109.47253 * 59.99551 * 16 14 12 18 18 H 1.48501 * 109.46935 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46931 * 299.99580 * 16 14 12 20 20 C 1.39688 * 119.72827 * 359.97438 * 5 4 3 21 21 C 1.37860 * 119.86070 * 0.02562 * 20 5 4 22 22 C 1.38506 * 119.93076 * 280.27488 * 3 2 1 23 23 Cl 1.73599 * 119.86657 * 359.97438 * 22 3 2 24 24 H 1.08994 * 109.47078 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47169 * 300.00054 * 1 2 3 26 26 H 1.09006 * 109.46875 * 59.99883 * 1 2 3 27 27 H 1.08999 * 109.47169 * 239.99946 * 2 1 3 28 28 H 1.08992 * 109.46802 * 120.00035 * 2 1 3 29 29 H 1.08000 * 120.07407 * 359.97438 * 4 3 2 30 30 H 1.08008 * 120.00717 * 0.02562 * 7 6 5 31 31 H 1.07997 * 119.66893 * 180.02562 * 8 7 6 32 32 H 1.07999 * 119.65877 * 179.97438 * 9 8 7 33 33 H 1.07994 * 120.01256 * 179.97438 * 10 9 8 34 34 H 0.96995 * 120.00419 * 179.97438 * 15 14 12 35 35 H 1.08001 * 120.06546 * 180.02562 * 20 5 4 36 36 H 1.08003 * 119.93169 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4574 2.0003 1.1770 5 6 2.9222 3.3173 1.1754 6 6 3.3798 3.9443 2.4337 7 6 2.5846 3.8929 3.5746 8 6 3.0189 4.4814 4.7457 9 6 4.2469 5.1288 4.8006 10 6 5.0482 5.1967 3.6984 11 6 4.6362 4.6010 2.4914 12 6 5.4608 4.6607 1.3508 13 1 5.3879 3.8966 0.5913 14 6 6.3752 5.7113 1.2020 15 7 6.2499 6.7945 1.9240 16 14 7.7735 5.5652 -0.0280 17 1 7.2159 5.3789 -1.3916 18 1 8.5947 6.8020 0.0070 19 1 8.6220 4.3982 0.3236 20 6 2.9539 4.0392 -0.0200 21 6 2.5263 3.4487 -1.1900 22 6 2.0609 2.1438 -1.1811 23 17 1.5181 1.4094 -2.6575 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 2.4302 1.4373 2.0982 30 1 1.6278 3.3927 3.5440 31 1 2.3977 4.4380 5.6281 32 1 4.5702 5.5839 5.7251 33 1 6.0004 5.7031 3.7532 34 1 6.8833 7.5219 1.8212 35 1 3.3127 5.0579 -0.0276 36 1 2.5500 4.0060 -2.1149 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205807572.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:48 Heat of formation + Delta-G solvation = 11.916883 kcal Electronic energy + Delta-G solvation = -19509.988065 eV Core-core repulsion = 16562.273797 eV Total energy + Delta-G solvation = -2947.714268 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.15651 -37.44307 -35.96139 -33.91848 -33.79600 -31.39325 -29.87088 -29.06773 -27.82268 -25.39100 -23.58753 -22.53588 -21.17086 -20.69772 -19.29097 -17.40077 -16.28532 -15.60626 -15.35039 -15.02592 -14.37198 -13.92777 -13.66333 -13.28491 -13.25318 -12.94371 -12.73419 -12.53006 -12.06104 -11.76765 -11.66147 -11.49327 -11.19899 -11.17895 -11.00044 -10.93505 -10.73688 -10.60379 -10.52504 -10.17714 -9.70303 -9.50212 -9.29416 -8.36609 -8.14759 -7.50758 -7.25273 -6.87736 -4.46924 1.63371 1.89491 2.56913 2.71509 2.93139 3.00254 3.03774 3.17044 3.83685 4.27093 4.52264 5.00681 5.12663 5.41815 5.52083 5.55281 5.72383 5.74369 5.92390 5.96935 6.07198 6.13535 6.15901 6.25056 6.33943 6.41204 6.55007 6.57225 6.85343 6.90669 6.95668 7.09360 7.18567 7.34366 7.45117 7.47481 7.80613 7.93196 7.99812 8.14856 8.48991 8.73315 8.82905 10.02824 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.015340 B = 0.005978 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.887721 B = 4682.808251 C = 6152.690311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.078 4.078 4 C -0.120 4.120 5 C 0.033 3.967 6 C -0.194 4.194 7 C -0.068 4.068 8 C -0.244 4.244 9 C -0.100 4.100 10 C -0.158 4.158 11 C 0.132 3.868 12 C -0.451 4.451 13 H 0.083 0.917 14 C 0.078 3.922 15 N -0.786 5.786 16 Si 0.904 3.096 17 H -0.263 1.263 18 H -0.277 1.277 19 H -0.262 1.262 20 C -0.092 4.092 21 C -0.113 4.113 22 C -0.058 4.058 23 Cl -0.095 7.095 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.123 0.877 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.284 0.716 35 H 0.138 0.862 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.322 -6.739 -4.121 9.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.078 4.078 4 C -0.139 4.139 5 C 0.033 3.967 6 C -0.196 4.196 7 C -0.087 4.087 8 C -0.263 4.263 9 C -0.118 4.118 10 C -0.177 4.177 11 C 0.130 3.870 12 C -0.480 4.480 13 H 0.101 0.899 14 C -0.141 4.141 15 N -0.410 5.410 16 Si 0.728 3.272 17 H -0.187 1.187 18 H -0.202 1.202 19 H -0.187 1.187 20 C -0.110 4.110 21 C -0.132 4.132 22 C -0.084 4.084 23 Cl -0.067 7.067 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.140 0.860 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.135 0.865 34 H 0.095 0.905 35 H 0.155 0.845 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.262 -6.553 -4.223 9.406 hybrid contribution 0.676 0.114 -0.627 0.929 sum -4.587 -6.440 -4.850 9.275 Atomic orbital electron populations 1.21728 0.94929 1.01256 1.02341 1.20501 0.96142 0.92680 1.02672 1.19490 1.00464 0.96082 0.91802 1.21131 1.01316 0.94912 0.96521 1.18923 0.92396 0.91797 0.93556 1.18549 0.96790 1.12464 0.91779 1.20560 0.97227 0.98306 0.92562 1.20277 0.99081 1.09689 0.97241 1.20494 0.95010 0.98949 0.97364 1.21041 1.00428 1.04347 0.91913 1.17516 0.89172 0.87741 0.92605 1.19567 1.15619 1.07791 1.04977 0.89866 1.25945 0.97689 0.94206 0.96302 1.69782 1.32792 1.03648 1.34756 0.86407 0.80806 0.78768 0.81191 1.18697 1.20221 1.18674 1.21411 0.97827 1.00913 0.90868 1.20893 1.00141 0.93133 0.99024 1.20634 1.07036 0.94568 0.86168 1.98294 1.89016 1.83380 1.35987 0.92796 0.92648 0.92342 0.90975 0.91156 0.85950 0.89184 0.89373 0.89434 0.86450 0.90532 0.84463 0.85952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.84 37.16 0.37 -1.36 16 2 C -0.08 -1.10 5.51 -27.88 -0.15 -1.25 16 3 C -0.08 -1.27 5.14 -104.64 -0.54 -1.81 16 4 C -0.12 -2.19 9.14 -39.17 -0.36 -2.55 16 5 C 0.03 0.69 4.92 -104.89 -0.52 0.17 16 6 C -0.19 -4.46 5.52 -104.23 -0.58 -5.04 16 7 C -0.07 -1.48 9.51 -39.30 -0.37 -1.85 16 8 C -0.24 -5.25 10.03 -39.39 -0.40 -5.65 16 9 C -0.10 -2.25 9.96 -39.98 -0.40 -2.64 16 10 C -0.16 -3.91 8.62 -39.28 -0.34 -4.24 16 11 C 0.13 3.30 5.55 -106.55 -0.59 2.71 16 12 C -0.45 -11.11 7.13 -37.90 -0.27 -11.38 16 13 H 0.08 2.03 6.65 -52.49 -0.35 1.69 16 14 C 0.08 1.84 5.15 -17.31 -0.09 1.75 16 15 N -0.79 -19.09 11.02 55.55 0.61 -18.47 16 16 Si 0.90 17.95 29.59 -169.99 -5.03 12.92 16 17 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 18 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 19 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 20 C -0.09 -1.83 8.01 -39.18 -0.31 -2.14 16 21 C -0.11 -1.98 9.81 -39.60 -0.39 -2.37 16 22 C -0.06 -0.96 6.32 -39.37 -0.25 -1.21 16 23 Cl -0.10 -1.37 26.56 -51.86 -1.38 -2.75 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.72 7.22 -51.93 -0.37 0.35 16 27 H 0.07 0.93 7.35 -51.93 -0.38 0.55 16 28 H 0.07 0.87 8.00 -51.93 -0.42 0.45 16 29 H 0.12 2.09 8.02 -52.49 -0.42 1.67 16 30 H 0.09 1.74 8.04 -52.48 -0.42 1.32 16 31 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.12 2.98 6.25 -52.49 -0.33 2.65 16 34 H 0.28 6.31 8.29 -40.82 -0.34 5.97 16 35 H 0.14 2.89 7.33 -52.49 -0.38 2.50 16 36 H 0.12 1.90 8.06 -52.48 -0.42 1.48 16 LS Contribution 316.26 15.07 4.77 4.77 Total: -1.00 -24.86 316.26 -10.54 -35.40 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -4.32 Total: 6.99 kcal Atomic # 6 Polarization: -33.68 SS G_CDS: -5.18 Total: -38.86 kcal Atomic # 7 Polarization: -19.09 SS G_CDS: 0.61 Total: -18.47 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -1.38 Total: -2.75 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -24.86 -10.54 -35.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205807572.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.317 kcal (2) G-P(sol) polarization free energy of solvation -24.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds