Wall clock time and date at job start Tue Mar 31 2020 06:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47259 * 2 1 4 4 C 1.37904 * 119.92900 * 99.99924 * 3 2 1 5 5 C 1.39655 * 119.86000 * 180.02562 * 4 3 2 6 6 C 1.47849 * 120.13201 * 180.02562 * 5 4 3 7 7 C 1.39168 * 120.34061 * 309.97483 * 6 5 4 8 8 C 1.38074 * 119.98741 * 180.02562 * 7 6 5 9 9 C 1.38930 * 120.67416 * 0.02562 * 8 7 6 10 10 C 1.36435 * 120.69025 * 0.02562 * 9 8 7 11 11 C 1.40760 * 119.98415 * 359.67464 * 10 9 8 12 12 C 1.40875 * 120.33338 * 180.32593 * 11 10 9 13 13 H 1.07989 * 119.99766 * 153.64990 * 12 11 10 14 14 C 1.40068 * 119.99534 * 333.64928 * 12 11 10 15 15 N 1.30777 * 120.00442 * 343.18973 * 14 12 11 16 16 Si 1.86803 * 119.99636 * 163.19456 * 14 12 11 17 17 H 1.48491 * 109.47253 * 59.99551 * 16 14 12 18 18 H 1.48501 * 109.46935 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46931 * 299.99580 * 16 14 12 20 20 C 1.39688 * 119.72827 * 359.97438 * 5 4 3 21 21 C 1.37860 * 119.86070 * 0.02562 * 20 5 4 22 22 C 1.38506 * 119.93076 * 280.27488 * 3 2 1 23 23 Cl 1.73599 * 119.86657 * 359.97438 * 22 3 2 24 24 H 1.08994 * 109.47078 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47169 * 300.00054 * 1 2 3 26 26 H 1.09006 * 109.46875 * 59.99883 * 1 2 3 27 27 H 1.08999 * 109.47169 * 239.99946 * 2 1 3 28 28 H 1.08992 * 109.46802 * 120.00035 * 2 1 3 29 29 H 1.08000 * 120.07407 * 359.97438 * 4 3 2 30 30 H 1.08008 * 120.00717 * 0.02562 * 7 6 5 31 31 H 1.07997 * 119.66893 * 180.02562 * 8 7 6 32 32 H 1.07999 * 119.65877 * 179.97438 * 9 8 7 33 33 H 1.07994 * 120.01256 * 179.97438 * 10 9 8 34 34 H 0.96995 * 120.00419 * 179.97438 * 15 14 12 35 35 H 1.08001 * 120.06546 * 180.02562 * 20 5 4 36 36 H 1.08003 * 119.93169 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4574 2.0003 1.1770 5 6 2.9222 3.3173 1.1754 6 6 3.3798 3.9443 2.4337 7 6 2.5846 3.8929 3.5746 8 6 3.0189 4.4814 4.7457 9 6 4.2469 5.1288 4.8006 10 6 5.0482 5.1967 3.6984 11 6 4.6362 4.6010 2.4914 12 6 5.4608 4.6607 1.3508 13 1 5.3879 3.8966 0.5913 14 6 6.3752 5.7113 1.2020 15 7 6.2499 6.7945 1.9240 16 14 7.7735 5.5652 -0.0280 17 1 7.2159 5.3789 -1.3916 18 1 8.5947 6.8020 0.0070 19 1 8.6220 4.3982 0.3236 20 6 2.9539 4.0392 -0.0200 21 6 2.5263 3.4487 -1.1900 22 6 2.0609 2.1438 -1.1811 23 17 1.5181 1.4094 -2.6575 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 2.4302 1.4373 2.0982 30 1 1.6278 3.3927 3.5440 31 1 2.3977 4.4380 5.6281 32 1 4.5702 5.5839 5.7251 33 1 6.0004 5.7031 3.7532 34 1 6.8833 7.5219 1.8212 35 1 3.3127 5.0579 -0.0276 36 1 2.5500 4.0060 -2.1149 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205807572.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:48 Heat of formation + Delta-G solvation = 4.141065 kcal Electronic energy + Delta-G solvation = -19510.325250 eV Core-core repulsion = 16562.273797 eV Total energy + Delta-G solvation = -2948.051452 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.62386 -39.07714 -37.25654 -35.58943 -35.11838 -32.94520 -31.58178 -30.44734 -29.36305 -27.16652 -24.76628 -24.06530 -22.77334 -22.27101 -20.81871 -19.17801 -17.71669 -17.27095 -16.69501 -16.58718 -15.92655 -15.37636 -15.21987 -14.66834 -14.47328 -14.38257 -14.23788 -14.16878 -13.48529 -13.24829 -13.11811 -12.86575 -12.83234 -12.61929 -12.44827 -12.25177 -12.24241 -12.12127 -11.74656 -11.48687 -11.37707 -11.18869 -11.05923 -9.83668 -9.62095 -9.30404 -8.91879 -8.61539 -6.30343 0.15319 0.48191 1.00845 1.19114 1.25691 1.36938 1.46130 1.52974 2.18147 2.72721 2.82578 3.71512 3.83395 3.92601 4.11733 4.35909 4.46098 4.50489 4.55051 4.58632 4.61516 4.68855 4.84659 4.97801 5.07562 5.08623 5.13051 5.19458 5.30338 5.37863 5.42631 5.46945 5.53835 5.70872 5.79291 5.93471 6.09201 6.15195 6.21255 6.37459 6.68473 6.92586 7.03085 8.29597 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.015340 B = 0.005978 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.887721 B = 4682.808251 C = 6152.690311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.082 4.082 3 C -0.072 4.072 4 C -0.120 4.120 5 C 0.007 3.993 6 C -0.198 4.198 7 C -0.077 4.077 8 C -0.242 4.242 9 C -0.106 4.106 10 C -0.186 4.186 11 C 0.101 3.899 12 C -0.473 4.473 13 H 0.075 0.925 14 C 0.042 3.958 15 N -0.817 5.817 16 Si 0.966 3.034 17 H -0.260 1.260 18 H -0.267 1.267 19 H -0.263 1.263 20 C -0.107 4.107 21 C -0.112 4.112 22 C -0.058 4.058 23 Cl -0.069 7.069 24 H 0.077 0.923 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.133 0.867 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.289 0.711 35 H 0.113 0.887 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.510 -8.585 -4.945 11.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 C -0.073 4.073 4 C -0.138 4.138 5 C 0.007 3.993 6 C -0.200 4.200 7 C -0.095 4.095 8 C -0.261 4.261 9 C -0.125 4.125 10 C -0.205 4.205 11 C 0.099 3.901 12 C -0.502 4.502 13 H 0.093 0.907 14 C -0.174 4.174 15 N -0.443 5.443 16 Si 0.788 3.212 17 H -0.184 1.184 18 H -0.191 1.191 19 H -0.188 1.188 20 C -0.125 4.125 21 C -0.131 4.131 22 C -0.084 4.084 23 Cl -0.040 7.040 24 H 0.096 0.904 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.151 0.849 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.127 0.873 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.131 0.869 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.463 -8.403 -5.044 11.740 hybrid contribution 0.886 0.591 -0.395 1.136 sum -5.578 -7.812 -5.438 11.032 Atomic orbital electron populations 1.21709 0.93590 1.02718 1.01909 1.20598 0.97173 0.90467 1.03711 1.19832 0.98981 0.97561 0.90932 1.21222 1.00887 0.93945 0.97791 1.18942 0.94307 0.93158 0.92887 1.18907 0.96183 1.11512 0.93361 1.20898 0.98037 0.98290 0.92231 1.20656 0.98770 1.08344 0.98324 1.20769 0.95278 0.98877 0.97540 1.21030 1.00603 1.05880 0.93007 1.17864 0.90384 0.88892 0.92967 1.19609 1.17090 1.08339 1.05147 0.90670 1.26628 0.99364 0.93531 0.97872 1.69831 1.33796 1.04302 1.36357 0.85471 0.77930 0.78874 0.78940 1.18419 1.19121 1.18755 1.21232 0.99199 1.00215 0.91860 1.21029 0.99483 0.93800 0.98776 1.20772 1.05915 0.94257 0.87462 1.98304 1.88595 1.82812 1.34277 0.90446 0.92954 0.92915 0.90196 0.89920 0.84912 0.86682 0.86367 0.87349 0.88163 0.90038 0.86853 0.84249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.84 71.98 0.71 -2.19 16 2 C -0.08 -1.93 5.51 29.85 0.16 -1.76 16 3 C -0.07 -2.22 5.14 -19.88 -0.10 -2.32 16 4 C -0.12 -4.23 9.14 22.53 0.21 -4.02 16 5 C 0.01 0.30 4.92 -20.04 -0.10 0.20 16 6 C -0.20 -9.27 5.52 -19.61 -0.11 -9.38 16 7 C -0.08 -3.26 9.51 22.45 0.21 -3.05 16 8 C -0.24 -10.15 10.03 22.40 0.22 -9.93 16 9 C -0.11 -4.82 9.96 22.01 0.22 -4.60 16 10 C -0.19 -9.54 8.62 22.47 0.19 -9.34 16 11 C 0.10 5.27 5.55 -21.12 -0.12 5.15 16 12 C -0.47 -24.35 7.13 23.36 0.17 -24.19 16 13 H 0.08 3.85 6.65 -2.92 -0.02 3.83 16 14 C 0.04 2.06 5.15 85.29 0.44 2.50 16 15 N -0.82 -41.39 11.02 21.85 0.24 -41.15 16 16 Si 0.97 37.66 29.59 68.60 2.03 39.69 16 17 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 18 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16 19 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 20 C -0.11 -4.33 8.01 22.53 0.18 -4.15 16 21 C -0.11 -3.85 9.81 22.25 0.22 -3.63 16 22 C -0.06 -1.80 6.32 22.41 0.14 -1.66 16 23 Cl -0.07 -1.78 26.56 -2.72 -0.07 -1.86 16 24 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.05 1.13 7.22 -2.38 -0.02 1.11 16 27 H 0.08 1.78 7.35 -2.39 -0.02 1.76 16 28 H 0.08 1.76 8.00 -2.39 -0.02 1.74 16 29 H 0.13 4.31 8.02 -2.91 -0.02 4.28 16 30 H 0.12 4.24 8.04 -2.91 -0.02 4.21 16 31 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 32 H 0.11 4.32 8.06 -2.91 -0.02 4.29 16 33 H 0.10 5.37 6.25 -2.91 -0.02 5.36 16 34 H 0.29 13.32 8.29 -92.71 -0.77 12.55 16 35 H 0.11 5.07 7.33 -2.91 -0.02 5.05 16 36 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -54.61 316.26 5.93 -48.68 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: 1.08 Total: 27.03 kcal Atomic # 6 Polarization: -75.03 SS G_CDS: 2.65 Total: -72.38 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.24 Total: -41.15 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.69 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -0.07 Total: -1.86 kcal Total: -54.61 5.93 -48.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205807572.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.819 kcal (2) G-P(sol) polarization free energy of solvation -54.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds