Wall clock time and date at job start Tue Mar 31 2020 06:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.76200 * 103.00037 * 2 1 4 4 C 1.39345 * 119.93324 * 0.02562 * 3 2 1 5 5 C 1.36550 * 120.20200 * 179.69459 * 4 3 2 6 6 C 1.39936 * 120.04896 * 0.56256 * 5 4 3 7 7 C 1.47517 * 120.06681 * 179.71381 * 6 5 4 8 8 N 1.33083 * 120.54981 * 234.28511 * 7 6 5 9 9 C 1.31881 * 120.02490 * 180.26077 * 8 7 6 10 10 C 1.39043 * 121.23377 * 359.76329 * 9 8 7 11 11 N 1.31519 * 121.14874 * 0.02562 * 10 9 8 12 12 C 1.34106 * 119.86003 * 359.97438 * 11 10 9 13 13 C 1.40679 * 120.58201 * 179.97438 * 12 11 10 14 14 H 1.07993 * 119.99813 * 189.61206 * 13 12 11 15 15 C 1.40121 * 119.99731 * 9.61891 * 13 12 11 16 16 N 1.30721 * 119.99760 * 191.44431 * 15 13 12 17 17 Si 1.86800 * 120.00445 * 11.71951 * 15 13 12 18 18 H 1.48504 * 109.46958 * 274.91475 * 17 15 13 19 19 H 1.48504 * 109.46984 * 34.90600 * 17 15 13 20 20 H 1.48489 * 109.47353 * 154.91271 * 17 15 13 21 21 C 1.39933 * 119.86292 * 359.43952 * 6 5 4 22 22 C 1.50698 * 120.09806 * 180.29868 * 21 6 5 23 23 C 1.37610 * 119.80103 * 0.27881 * 21 6 5 24 24 H 1.09000 * 109.47172 * 300.00304 * 1 2 3 25 25 H 1.09008 * 109.46925 * 59.99850 * 1 2 3 26 26 H 1.09001 * 109.47160 * 179.97438 * 1 2 3 27 27 H 1.08007 * 119.90000 * 359.97438 * 4 3 2 28 28 H 1.07993 * 119.97635 * 180.27951 * 5 4 3 29 29 H 1.07996 * 119.38317 * 179.74680 * 9 8 7 30 30 H 1.08003 * 119.42710 * 179.97438 * 10 9 8 31 31 H 0.96992 * 119.99889 * 179.97438 * 16 15 13 32 32 H 1.08998 * 109.47135 * 84.37557 * 22 21 6 33 33 H 1.09001 * 109.46726 * 204.37527 * 22 21 6 34 34 H 1.08998 * 109.46802 * 324.37497 * 22 21 6 35 35 H 1.08002 * 120.02448 * 179.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1901 2.6660 0.0005 5 6 1.4910 3.9979 0.0068 6 6 2.8269 4.4145 0.0009 7 6 3.1524 5.8533 0.0013 8 7 3.9497 6.3667 -0.9325 9 6 4.2380 7.6536 -0.9192 10 6 3.7193 8.4987 0.0555 11 7 2.9235 8.0424 0.9980 12 6 2.6007 6.7411 1.0273 13 6 1.7512 6.2368 2.0288 14 1 1.6204 5.1705 2.1392 15 6 1.0749 7.1179 2.8829 16 7 0.4678 6.6604 3.9464 17 14 1.0343 8.9454 2.4979 18 1 2.2582 9.5919 3.0358 19 1 0.9774 9.1401 1.0268 20 1 -0.1649 9.5568 3.1249 21 6 3.8534 3.4634 0.0003 22 6 5.2938 3.9061 0.0007 23 6 3.5434 2.1227 -0.0002 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.1581 2.3472 0.0005 28 1 0.6975 4.7304 0.0118 29 1 4.8893 8.0585 -1.6795 30 1 3.9750 9.5479 0.0389 31 1 -0.0001 7.2704 4.5378 32 1 5.6115 4.1085 1.0236 33 1 5.9161 3.1184 -0.4239 34 1 5.3957 4.8117 -0.5973 35 1 4.3328 1.3855 -0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206064025.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:42 Heat of formation + Delta-G solvation = 45.709104 kcal Electronic energy + Delta-G solvation = -19690.225993 eV Core-core repulsion = 16778.313523 eV Total energy + Delta-G solvation = -2911.912470 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.52470 -38.24313 -34.33311 -33.19877 -32.20614 -31.72361 -29.27716 -29.07175 -26.61757 -26.11536 -23.60331 -22.18441 -21.28946 -20.52807 -18.00406 -16.95724 -16.44761 -16.18248 -15.44063 -14.86472 -14.56872 -14.07441 -13.82237 -13.76834 -13.20957 -13.14799 -13.08760 -12.85508 -12.67397 -12.18636 -11.88756 -11.81418 -11.76525 -11.31037 -11.16983 -11.00362 -10.71780 -10.59991 -10.01265 -9.86064 -9.62139 -9.29050 -9.09785 -8.32862 -8.04166 -7.66640 -7.22607 -6.96293 -4.99476 1.46642 1.73306 1.92071 2.18920 2.59619 2.60691 3.24953 3.32171 3.40969 4.12514 4.16557 4.35473 5.06458 5.09724 5.17490 5.18724 5.30725 5.34725 5.59755 5.62537 5.69283 5.85581 5.89545 6.03578 6.12667 6.18523 6.31254 6.39105 6.43613 6.58852 6.69618 6.71482 6.86387 6.95618 7.26067 7.36032 7.48192 7.79638 8.13959 8.18068 8.81397 9.27418 9.62772 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.005844 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.257901 B = 4790.346435 C = 5945.945055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.140 6.140 3 C -0.095 4.095 4 C -0.137 4.137 5 C -0.075 4.075 6 C 0.023 3.977 7 C -0.005 4.005 8 N -0.398 5.398 9 C -0.128 4.128 10 C 0.115 3.885 11 N -0.547 5.547 12 C 0.204 3.796 13 C -0.367 4.367 14 H 0.110 0.890 15 C 0.077 3.923 16 N -0.770 5.770 17 Si 1.000 3.000 18 H -0.272 1.272 19 H -0.263 1.263 20 H -0.324 1.324 21 C -0.055 4.055 22 C -0.117 4.117 23 C -0.102 4.102 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.102 0.898 27 H 0.118 0.882 28 H 0.129 0.871 29 H 0.133 0.867 30 H 0.134 0.866 31 H 0.296 0.704 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.243 -6.535 -4.645 8.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.100 5.900 3 C -0.207 4.207 4 C -0.160 4.160 5 C -0.095 4.095 6 C 0.020 3.980 7 C -0.156 4.156 8 N -0.109 5.109 9 C -0.286 4.286 10 C -0.051 4.051 11 N -0.268 5.268 12 C 0.080 3.920 13 C -0.396 4.396 14 H 0.127 0.873 15 C -0.150 4.150 16 N -0.390 5.390 17 Si 0.833 3.167 18 H -0.198 1.198 19 H -0.189 1.189 20 H -0.257 1.257 21 C -0.058 4.058 22 C -0.173 4.173 23 C -0.126 4.126 24 H 0.103 0.897 25 H 0.101 0.899 26 H 0.121 0.879 27 H 0.136 0.864 28 H 0.147 0.853 29 H 0.151 0.849 30 H 0.151 0.849 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.763 -7.600 -4.424 8.826 hybrid contribution -0.917 1.914 0.086 2.124 sum -0.154 -5.686 -4.337 7.153 Atomic orbital electron populations 1.23602 0.95028 1.06448 1.05773 1.85140 1.06296 1.04975 1.93573 1.21591 0.96566 0.95167 1.07384 1.20671 0.97599 0.93103 1.04604 1.20898 0.96203 0.94951 0.97489 1.18171 0.92045 0.90408 0.97398 1.20961 1.04967 0.92651 0.97062 1.67746 1.08500 1.13317 1.21387 1.22286 1.11264 0.90534 1.04479 1.23010 0.91855 0.99536 0.90718 1.67566 1.19081 1.14353 1.25821 1.20295 0.92358 0.87374 0.91930 1.19658 1.16302 0.97250 1.06438 0.87269 1.26599 0.91131 1.05050 0.92215 1.69597 1.20656 1.40375 1.08387 0.84527 0.75175 0.77349 0.79623 1.19807 1.18868 1.25662 1.19883 0.95826 0.91744 0.98300 1.20873 0.91413 1.02694 1.02367 1.20407 0.93797 0.95117 1.03250 0.89699 0.89909 0.87940 0.86437 0.85346 0.84916 0.84871 0.89341 0.91939 0.92553 0.89147 0.86156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.14 101.05 0.92 -0.55 16 2 S -0.14 -1.95 22.56 -107.50 -2.43 -4.37 16 3 C -0.09 -1.60 6.13 -38.76 -0.24 -1.83 16 4 C -0.14 -2.36 9.30 -39.78 -0.37 -2.73 16 5 C -0.07 -1.48 7.85 -39.56 -0.31 -1.79 16 6 C 0.02 0.49 5.05 -104.84 -0.53 -0.04 16 7 C -0.01 -0.12 5.83 -80.23 -0.47 -0.59 16 8 N -0.40 -8.91 8.37 -7.87 -0.07 -8.98 16 9 C -0.13 -2.64 11.17 -17.23 -0.19 -2.84 16 10 C 0.11 2.43 11.17 -17.39 -0.19 2.24 16 11 N -0.55 -13.28 5.11 -9.55 -0.05 -13.33 16 12 C 0.20 5.07 6.42 -82.64 -0.53 4.54 16 13 C -0.37 -9.30 8.62 -37.95 -0.33 -9.63 16 14 H 0.11 2.83 6.26 -52.49 -0.33 2.50 16 15 C 0.08 1.90 5.52 -17.32 -0.10 1.81 16 16 N -0.77 -18.96 13.92 55.56 0.77 -18.19 16 17 Si 1.00 22.69 25.47 -169.99 -4.33 18.36 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 19 H -0.26 -6.20 6.57 56.52 0.37 -5.83 16 20 H -0.32 -7.07 7.11 56.52 0.40 -6.67 16 21 C -0.05 -1.05 5.91 -104.22 -0.62 -1.67 16 22 C -0.12 -2.05 9.53 36.00 0.34 -1.70 16 23 C -0.10 -1.78 9.42 -39.40 -0.37 -2.15 16 24 H 0.08 0.90 7.74 -51.92 -0.40 0.50 16 25 H 0.08 0.82 7.74 -51.92 -0.40 0.42 16 26 H 0.10 0.85 8.14 -51.92 -0.42 0.42 16 27 H 0.12 1.73 5.85 -52.48 -0.31 1.42 16 28 H 0.13 2.57 7.70 -52.49 -0.40 2.16 16 29 H 0.13 2.31 8.06 -52.49 -0.42 1.88 16 30 H 0.13 2.32 8.06 -52.48 -0.42 1.90 16 31 H 0.30 6.59 8.29 -40.82 -0.34 6.25 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.82 8.05 -51.93 -0.42 0.41 16 34 H 0.09 1.72 5.74 -51.93 -0.30 1.43 16 35 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 305.12 15.07 4.60 4.60 Total: -1.00 -27.52 305.12 -8.31 -35.83 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -3.84 Total: 2.99 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -2.98 Total: -16.92 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.66 Total: -40.49 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.33 Total: 18.36 kcal Atomic # 16 Polarization: -1.95 SS G_CDS: -2.43 Total: -4.37 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.52 -8.31 -35.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206064025.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.539 kcal (2) G-P(sol) polarization free energy of solvation -27.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds