Wall clock time and date at job start Tue Mar 31 2020 06:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76209 * 102.99877 * 2 1 4 4 C 1.39187 * 119.95140 * 359.97438 * 3 2 1 5 5 C 1.37723 * 120.04106 * 179.97438 * 4 3 2 6 6 C 1.39564 * 119.95566 * 0.02562 * 5 4 3 7 7 C 1.48148 * 120.04435 * 179.97438 * 6 5 4 8 8 C 1.40135 * 119.99219 * 128.61625 * 7 6 5 9 9 N 1.32142 * 120.28541 * 180.02562 * 8 7 6 10 10 C 1.31911 * 120.29909 * 359.73123 * 9 8 7 11 11 C 1.40811 * 119.97742 * 0.52511 * 10 9 8 12 12 C 1.41306 * 120.14192 * 179.75185 * 11 10 9 13 13 H 1.08003 * 119.99426 * 6.60805 * 12 11 10 14 14 C 1.40030 * 120.00495 * 186.60943 * 12 11 10 15 15 N 1.30734 * 120.00212 * 183.42267 * 14 12 11 16 16 Si 1.86803 * 119.99515 * 3.42011 * 14 12 11 17 17 H 1.48506 * 109.46872 * 180.02562 * 16 14 12 18 18 H 1.48492 * 109.47318 * 299.99788 * 16 14 12 19 19 H 1.48504 * 109.47266 * 60.00369 * 16 14 12 20 20 N 1.32580 * 119.99541 * 308.64284 * 7 6 5 21 21 C 1.39521 * 119.90801 * 0.25536 * 6 5 4 22 22 C 1.50706 * 120.02213 * 179.72483 * 21 6 5 23 23 C 1.37760 * 119.95625 * 359.46466 * 21 6 5 24 24 H 1.09003 * 109.47080 * 300.00067 * 1 2 3 25 25 H 1.08995 * 109.46944 * 60.00110 * 1 2 3 26 26 H 1.09000 * 109.46935 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.97919 * 0.02562 * 4 3 2 28 28 H 1.08000 * 120.01635 * 180.02562 * 5 4 3 29 29 H 1.07997 * 119.85331 * 0.04841 * 8 7 6 30 30 H 1.07996 * 120.01103 * 180.25235 * 10 9 8 31 31 H 0.97000 * 120.00361 * 354.88071 * 15 14 12 32 32 H 1.09000 * 109.47022 * 84.41836 * 22 21 6 33 33 H 1.08996 * 109.46965 * 204.42562 * 22 21 6 34 34 H 1.09000 * 109.46784 * 324.42478 * 22 21 6 35 35 H 1.08005 * 119.97953 * 180.27580 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1916 2.6653 -0.0005 5 6 1.4993 4.0077 0.0000 6 6 2.8336 4.4169 0.0005 7 6 3.1668 5.8604 0.0005 8 6 4.0620 6.3727 0.9492 9 7 4.3629 7.6594 0.9548 10 6 3.8275 8.4719 0.0643 11 6 2.9224 7.9708 -0.8909 12 6 2.3427 8.8391 -1.8432 13 1 2.6723 9.8655 -1.9091 14 6 1.3410 8.3689 -2.7013 15 7 0.8519 9.1525 -3.6265 16 14 0.7037 6.6219 -2.5240 17 1 -0.3455 6.3718 -3.5449 18 1 1.8220 5.6648 -2.7196 19 1 0.1281 6.4403 -1.1672 20 7 2.6176 6.6674 -0.8966 21 6 3.8532 3.4645 -0.0049 22 6 5.2949 3.9035 -0.0106 23 6 3.5413 2.1227 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.1592 2.3483 -0.0005 28 1 0.7085 4.7433 0.0000 29 1 4.5081 5.7129 1.6786 30 1 4.0798 9.5220 0.0705 31 1 1.1285 10.0811 -3.6716 32 1 5.6178 4.1038 1.0111 33 1 5.9132 3.1147 -0.4390 34 1 5.3965 4.8096 -0.6079 35 1 4.3303 1.3852 0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206077685.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:45 Heat of formation + Delta-G solvation = 40.275592 kcal Electronic energy + Delta-G solvation = -19594.396359 eV Core-core repulsion = 16682.248275 eV Total energy + Delta-G solvation = -2912.148084 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.90179 -38.56896 -34.36228 -33.31423 -32.81771 -31.55371 -29.49020 -29.24613 -26.69055 -26.01439 -24.01200 -22.11115 -21.64849 -20.58068 -18.64550 -17.26455 -16.49267 -16.01937 -15.72647 -15.30454 -14.61515 -14.36946 -14.00705 -13.67065 -13.49206 -13.33996 -13.16391 -13.12765 -12.70074 -12.48901 -12.18943 -12.03865 -11.73694 -11.29260 -11.16570 -11.12613 -10.95183 -10.27703 -9.95864 -9.94488 -9.53917 -9.34580 -9.21399 -8.62741 -8.19259 -7.82407 -7.40343 -7.17815 -5.04344 1.11988 1.47478 1.53042 2.19969 2.33662 2.49273 3.42731 3.51954 3.82059 3.84939 4.24473 4.45198 4.82642 4.89017 4.90566 4.92145 5.01921 5.25669 5.34982 5.43988 5.53787 5.59045 5.71572 5.83864 5.89086 5.97091 6.04341 6.11973 6.32014 6.34992 6.42873 6.58504 6.74537 6.85643 7.02909 7.17625 7.21915 7.76816 7.93667 8.30487 8.72274 9.20300 9.76075 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.018585 B = 0.005768 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.197307 B = 4852.845392 C = 6015.289314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.129 6.129 3 C -0.083 4.083 4 C -0.140 4.140 5 C -0.074 4.074 6 C -0.023 4.023 7 C 0.168 3.832 8 C -0.099 4.099 9 N -0.419 5.419 10 C -0.042 4.042 11 C 0.200 3.800 12 C -0.451 4.451 13 H 0.090 0.910 14 C 0.043 3.957 15 N -0.789 5.789 16 Si 1.141 2.859 17 H -0.326 1.326 18 H -0.271 1.271 19 H -0.290 1.290 20 N -0.532 5.532 21 C -0.048 4.048 22 C -0.113 4.113 23 C -0.101 4.101 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.105 0.895 27 H 0.124 0.876 28 H 0.131 0.869 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.287 0.713 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.140 -14.111 5.298 15.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.112 5.888 3 C -0.196 4.196 4 C -0.163 4.163 5 C -0.094 4.094 6 C -0.027 4.027 7 C 0.024 3.976 8 C -0.256 4.256 9 N -0.130 5.130 10 C -0.214 4.214 11 C 0.075 3.925 12 C -0.483 4.483 13 H 0.108 0.892 14 C -0.180 4.180 15 N -0.410 5.410 16 Si 0.975 3.025 17 H -0.259 1.259 18 H -0.198 1.198 19 H -0.218 1.218 20 N -0.255 5.255 21 C -0.051 4.051 22 C -0.170 4.170 23 C -0.124 4.124 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.124 0.876 27 H 0.142 0.858 28 H 0.149 0.851 29 H 0.154 0.846 30 H 0.157 0.843 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.207 -16.113 4.592 16.756 hybrid contribution 0.153 2.609 0.592 2.679 sum -0.054 -13.505 5.183 14.466 Atomic orbital electron populations 1.23652 0.94803 1.06801 1.05893 1.85276 1.06489 1.03944 1.93103 1.21663 0.96596 0.95798 1.05530 1.21013 0.98013 0.92829 1.04445 1.21251 0.96138 0.95245 0.96798 1.18551 0.92817 0.91040 1.00274 1.20257 0.93318 0.91874 0.92125 1.22498 1.06250 0.92665 1.04142 1.67713 1.20154 1.03857 1.21227 1.23160 1.02424 0.99178 0.96620 1.19436 0.91447 0.88874 0.92739 1.20819 1.16106 0.98380 1.12993 0.89218 1.27822 0.92326 1.08503 0.89373 1.70632 1.36643 1.08184 1.25553 0.82124 0.74579 0.71613 0.74192 1.25924 1.19778 1.21833 1.67587 1.29209 1.04130 1.24549 1.19803 0.95680 0.91860 0.97718 1.20883 0.91208 1.02024 1.02842 1.20435 0.94050 0.95007 1.02934 0.89714 0.89609 0.87632 0.85841 0.85128 0.84584 0.84255 0.90132 0.90581 0.91787 0.90857 0.85445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.15 101.05 0.92 -0.29 16 2 S -0.13 -1.51 22.56 -107.50 -2.43 -3.94 16 3 C -0.08 -1.20 6.12 -38.89 -0.24 -1.44 16 4 C -0.14 -2.10 9.35 -39.42 -0.37 -2.47 16 5 C -0.07 -1.33 9.34 -39.28 -0.37 -1.70 16 6 C -0.02 -0.44 5.60 -104.86 -0.59 -1.03 16 7 C 0.17 3.72 5.50 -82.76 -0.46 3.26 16 8 C -0.10 -2.10 9.28 -16.71 -0.15 -2.26 16 9 N -0.42 -9.55 10.47 -12.04 -0.13 -9.67 16 10 C -0.04 -0.99 10.97 -16.55 -0.18 -1.17 16 11 C 0.20 5.05 6.38 -84.84 -0.54 4.51 16 12 C -0.45 -11.67 9.59 -37.74 -0.36 -12.03 16 13 H 0.09 2.26 8.05 -52.48 -0.42 1.84 16 14 C 0.04 1.12 5.52 -17.35 -0.10 1.03 16 15 N -0.79 -20.60 13.65 55.55 0.76 -19.85 16 16 Si 1.14 27.50 24.80 -169.99 -4.22 23.28 16 17 H -0.33 -7.79 7.11 56.52 0.40 -7.39 16 18 H -0.27 -6.66 6.64 56.52 0.38 -6.29 16 19 H -0.29 -6.81 6.26 56.52 0.35 -6.45 16 20 N -0.53 -13.18 4.63 -7.51 -0.03 -13.21 16 21 C -0.05 -0.78 5.87 -104.32 -0.61 -1.40 16 22 C -0.11 -1.63 8.45 36.01 0.30 -1.32 16 23 C -0.10 -1.47 9.41 -39.42 -0.37 -1.84 16 24 H 0.08 0.68 7.74 -51.92 -0.40 0.27 16 25 H 0.08 0.72 7.74 -51.93 -0.40 0.32 16 26 H 0.11 0.68 8.14 -51.92 -0.42 0.26 16 27 H 0.12 1.53 5.86 -52.49 -0.31 1.22 16 28 H 0.13 2.45 6.74 -52.49 -0.35 2.10 16 29 H 0.14 2.52 6.83 -52.49 -0.36 2.16 16 30 H 0.14 2.98 8.06 -52.49 -0.42 2.56 16 31 H 0.29 7.08 8.72 -40.82 -0.36 6.72 16 32 H 0.08 0.99 7.24 -51.93 -0.38 0.62 16 33 H 0.06 0.76 8.05 -51.93 -0.42 0.34 16 34 H 0.07 1.23 6.90 -51.93 -0.36 0.87 16 35 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 LS Contribution 304.77 15.07 4.59 4.59 Total: -1.00 -28.19 304.77 -8.45 -36.64 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -3.89 Total: 0.31 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -3.11 Total: -18.16 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.60 Total: -42.73 kcal Atomic # 14 Polarization: 27.50 SS G_CDS: -4.22 Total: 23.28 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.43 Total: -3.94 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.19 -8.45 -36.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206077685.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.917 kcal (2) G-P(sol) polarization free energy of solvation -28.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds