Wall clock time and date at job start Tue Mar 31 2020 06:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76209 * 102.99877 * 2 1 4 4 C 1.39187 * 119.95140 * 359.97438 * 3 2 1 5 5 C 1.37723 * 120.04106 * 179.97438 * 4 3 2 6 6 C 1.39564 * 119.95566 * 0.02562 * 5 4 3 7 7 C 1.48148 * 120.04435 * 179.97438 * 6 5 4 8 8 C 1.40135 * 119.99219 * 128.61625 * 7 6 5 9 9 N 1.32142 * 120.28541 * 180.02562 * 8 7 6 10 10 C 1.31911 * 120.29909 * 359.73123 * 9 8 7 11 11 C 1.40811 * 119.97742 * 0.52511 * 10 9 8 12 12 C 1.41306 * 120.14192 * 179.75185 * 11 10 9 13 13 H 1.08003 * 119.99426 * 6.60805 * 12 11 10 14 14 C 1.40030 * 120.00495 * 186.60943 * 12 11 10 15 15 N 1.30734 * 120.00212 * 183.42267 * 14 12 11 16 16 Si 1.86803 * 119.99515 * 3.42011 * 14 12 11 17 17 H 1.48506 * 109.46872 * 180.02562 * 16 14 12 18 18 H 1.48492 * 109.47318 * 299.99788 * 16 14 12 19 19 H 1.48504 * 109.47266 * 60.00369 * 16 14 12 20 20 N 1.32580 * 119.99541 * 308.64284 * 7 6 5 21 21 C 1.39521 * 119.90801 * 0.25536 * 6 5 4 22 22 C 1.50706 * 120.02213 * 179.72483 * 21 6 5 23 23 C 1.37760 * 119.95625 * 359.46466 * 21 6 5 24 24 H 1.09003 * 109.47080 * 300.00067 * 1 2 3 25 25 H 1.08995 * 109.46944 * 60.00110 * 1 2 3 26 26 H 1.09000 * 109.46935 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.97919 * 0.02562 * 4 3 2 28 28 H 1.08000 * 120.01635 * 180.02562 * 5 4 3 29 29 H 1.07997 * 119.85331 * 0.04841 * 8 7 6 30 30 H 1.07996 * 120.01103 * 180.25235 * 10 9 8 31 31 H 0.97000 * 120.00361 * 354.88071 * 15 14 12 32 32 H 1.09000 * 109.47022 * 84.41836 * 22 21 6 33 33 H 1.08996 * 109.46965 * 204.42562 * 22 21 6 34 34 H 1.09000 * 109.46784 * 324.42478 * 22 21 6 35 35 H 1.08005 * 119.97953 * 180.27580 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1916 2.6653 -0.0005 5 6 1.4993 4.0077 0.0000 6 6 2.8336 4.4169 0.0005 7 6 3.1668 5.8604 0.0005 8 6 4.0620 6.3727 0.9492 9 7 4.3629 7.6594 0.9548 10 6 3.8275 8.4719 0.0643 11 6 2.9224 7.9708 -0.8909 12 6 2.3427 8.8391 -1.8432 13 1 2.6723 9.8655 -1.9091 14 6 1.3410 8.3689 -2.7013 15 7 0.8519 9.1525 -3.6265 16 14 0.7037 6.6219 -2.5240 17 1 -0.3455 6.3718 -3.5449 18 1 1.8220 5.6648 -2.7196 19 1 0.1281 6.4403 -1.1672 20 7 2.6176 6.6674 -0.8966 21 6 3.8532 3.4645 -0.0049 22 6 5.2949 3.9035 -0.0106 23 6 3.5413 2.1227 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.1592 2.3483 -0.0005 28 1 0.7085 4.7433 0.0000 29 1 4.5081 5.7129 1.6786 30 1 4.0798 9.5220 0.0705 31 1 1.1285 10.0811 -3.6716 32 1 5.6178 4.1038 1.0111 33 1 5.9132 3.1147 -0.4390 34 1 5.3965 4.8096 -0.6079 35 1 4.3303 1.3852 0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206077685.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:45 Heat of formation + Delta-G solvation = 25.158130 kcal Electronic energy + Delta-G solvation = -19595.051901 eV Core-core repulsion = 16682.248275 eV Total energy + Delta-G solvation = -2912.803627 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.55427 -39.97989 -36.26066 -34.89728 -34.28420 -33.10784 -30.96069 -30.03923 -27.89630 -27.80992 -25.59831 -23.85754 -22.95822 -22.02868 -20.58277 -18.39278 -18.09513 -17.67904 -17.33788 -16.61185 -15.99755 -15.73126 -15.29036 -15.13286 -14.86300 -14.75936 -14.51218 -14.33267 -14.28221 -13.66815 -13.38681 -13.34125 -13.14918 -13.05969 -12.92434 -12.39150 -12.29130 -11.87125 -11.68992 -11.45543 -11.21252 -11.09419 -10.79240 -9.93795 -9.78858 -9.75217 -9.20544 -8.30781 -6.99193 -0.25949 0.31445 0.46496 0.56327 0.68105 1.45454 1.47549 1.59726 1.91847 2.32193 2.46828 2.61602 3.27999 3.41707 3.76802 3.83556 3.85425 4.08196 4.15210 4.28626 4.29505 4.34016 4.39339 4.51597 4.65295 4.76281 4.78923 4.86499 4.89636 4.92729 5.14727 5.15784 5.24530 5.28435 5.41380 5.54957 5.79509 5.83482 6.06220 6.38063 6.87989 7.36036 7.80491 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.018585 B = 0.005768 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.197307 B = 4852.845392 C = 6015.289314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.123 6.123 3 C -0.082 4.082 4 C -0.140 4.140 5 C -0.089 4.089 6 C -0.062 4.062 7 C 0.165 3.835 8 C -0.081 4.081 9 N -0.424 5.424 10 C -0.056 4.056 11 C 0.189 3.811 12 C -0.481 4.481 13 H 0.084 0.916 14 C 0.021 3.979 15 N -0.812 5.812 16 Si 1.170 2.830 17 H -0.325 1.325 18 H -0.282 1.282 19 H -0.288 1.288 20 N -0.550 5.550 21 C -0.047 4.047 22 C -0.111 4.111 23 C -0.100 4.100 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.130 0.870 27 H 0.149 0.851 28 H 0.113 0.887 29 H 0.169 0.831 30 H 0.154 0.846 31 H 0.288 0.712 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.043 0.957 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.479 -17.514 6.585 18.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.120 5.880 3 C -0.195 4.195 4 C -0.163 4.163 5 C -0.110 4.110 6 C -0.066 4.066 7 C 0.022 3.978 8 C -0.239 4.239 9 N -0.135 5.135 10 C -0.225 4.225 11 C 0.064 3.936 12 C -0.514 4.514 13 H 0.102 0.898 14 C -0.198 4.198 15 N -0.434 5.434 16 Si 1.003 2.997 17 H -0.258 1.258 18 H -0.210 1.210 19 H -0.216 1.216 20 N -0.273 5.273 21 C -0.050 4.050 22 C -0.167 4.167 23 C -0.124 4.124 24 H 0.112 0.888 25 H 0.108 0.892 26 H 0.149 0.851 27 H 0.167 0.833 28 H 0.131 0.869 29 H 0.186 0.814 30 H 0.171 0.829 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.062 0.938 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.132 -19.502 5.883 20.371 hybrid contribution 0.116 3.363 0.360 3.384 sum 0.248 -16.139 6.244 17.307 Atomic orbital electron populations 1.23831 0.92101 1.08683 1.06530 1.85325 1.09474 1.00914 1.92325 1.22031 0.96514 0.97719 1.03195 1.21231 0.99667 0.91668 1.03759 1.21214 0.95357 0.96397 0.98027 1.18576 0.94201 0.89722 1.04106 1.20797 0.92576 0.93332 0.91124 1.23088 1.04757 0.92453 1.03588 1.67795 1.20175 1.04505 1.20994 1.23327 1.02452 1.00110 0.96618 1.19602 0.91762 0.89304 0.92970 1.20804 1.17502 0.98547 1.14540 0.89797 1.28311 0.92482 1.09703 0.89348 1.70630 1.37838 1.08523 1.26427 0.81715 0.73897 0.69925 0.74144 1.25776 1.20959 1.21571 1.67534 1.29985 1.04199 1.25599 1.19991 0.95823 0.92196 0.96971 1.20905 0.90704 1.01669 1.03468 1.20746 0.95030 0.94682 1.01911 0.88847 0.89227 0.85147 0.83334 0.86916 0.81408 0.82867 0.90015 0.89027 0.88930 0.93750 0.82774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.15 113.37 1.04 -0.81 16 2 S -0.12 -2.39 22.56 -56.49 -1.27 -3.66 16 3 C -0.08 -2.10 6.12 22.72 0.14 -1.96 16 4 C -0.14 -3.89 9.35 22.38 0.21 -3.68 16 5 C -0.09 -3.15 9.34 22.47 0.21 -2.94 16 6 C -0.06 -2.32 5.60 -20.02 -0.11 -2.43 16 7 C 0.17 7.22 5.50 42.13 0.23 7.46 16 8 C -0.08 -3.34 9.28 85.11 0.79 -2.55 16 9 N -0.42 -18.95 10.47 -191.99 -2.01 -20.96 16 10 C -0.06 -2.67 10.97 85.31 0.94 -1.73 16 11 C 0.19 9.77 6.38 40.22 0.26 10.03 16 12 C -0.48 -25.81 9.59 23.46 0.23 -25.59 16 13 H 0.08 4.44 8.05 -2.91 -0.02 4.42 16 14 C 0.02 1.15 5.52 85.29 0.47 1.62 16 15 N -0.81 -43.65 13.65 21.84 0.30 -43.35 16 16 Si 1.17 57.18 24.80 68.60 1.70 58.88 16 17 H -0.32 -15.50 7.11 99.48 0.71 -14.79 16 18 H -0.28 -14.11 6.64 99.48 0.66 -13.45 16 19 H -0.29 -13.70 6.26 99.48 0.62 -13.07 16 20 N -0.55 -27.58 4.63 -177.69 -0.82 -28.40 16 21 C -0.05 -1.43 5.87 -19.67 -0.12 -1.55 16 22 C -0.11 -2.91 8.45 71.24 0.60 -2.31 16 23 C -0.10 -2.60 9.41 22.37 0.21 -2.39 16 24 H 0.09 1.10 7.74 -2.39 -0.02 1.09 16 25 H 0.09 1.15 7.74 -2.39 -0.02 1.13 16 26 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.15 3.24 5.86 -2.91 -0.02 3.22 16 28 H 0.11 4.27 6.74 -2.91 -0.02 4.26 16 29 H 0.17 5.76 6.83 -2.91 -0.02 5.74 16 30 H 0.15 6.63 8.06 -2.91 -0.02 6.61 16 31 H 0.29 14.77 8.72 -92.71 -0.81 13.96 16 32 H 0.09 2.09 7.24 -2.39 -0.02 2.08 16 33 H 0.09 1.88 8.05 -2.39 -0.02 1.86 16 34 H 0.04 1.42 6.90 -2.39 -0.02 1.41 16 35 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -61.64 304.77 3.93 -57.71 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 0.94 Total: 8.62 kcal Atomic # 6 Polarization: -33.93 SS G_CDS: 5.09 Total: -28.84 kcal Atomic # 7 Polarization: -90.17 SS G_CDS: -2.53 Total: -92.71 kcal Atomic # 14 Polarization: 57.18 SS G_CDS: 1.70 Total: 58.88 kcal Atomic # 16 Polarization: -2.39 SS G_CDS: -1.27 Total: -3.66 kcal Total: -61.64 3.93 -57.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206077685.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.869 kcal (2) G-P(sol) polarization free energy of solvation -61.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds