Wall clock time and date at job start Tue Mar 31 2020 06:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76199 * 102.99954 * 2 1 4 4 C 1.39377 * 119.93627 * 359.72496 * 3 2 1 5 5 C 1.36556 * 120.19183 * 179.72182 * 4 3 2 6 6 C 1.39899 * 120.06128 * 0.55251 * 5 4 3 7 7 C 1.47674 * 120.06434 * 179.69648 * 6 5 4 8 8 C 1.40576 * 120.79487 * 55.72013 * 7 6 5 9 9 N 1.31526 * 119.07953 * 179.77985 * 8 7 6 10 10 C 1.33718 * 120.83832 * 0.48261 * 9 8 7 11 11 C 1.40908 * 119.11956 * 179.74579 * 10 9 8 12 12 H 1.08002 * 119.99715 * 180.02562 * 11 10 9 13 13 C 1.40074 * 120.00512 * 0.02562 * 11 10 9 14 14 N 1.30707 * 119.99664 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00317 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46832 * 60.00080 * 15 13 11 17 17 H 1.48500 * 109.46865 * 179.97438 * 15 13 11 18 18 H 1.48490 * 109.46975 * 299.99859 * 15 13 11 19 19 N 1.33708 * 121.75512 * 359.76905 * 10 9 8 20 20 C 1.31522 * 120.83702 * 359.97438 * 19 10 9 21 21 C 1.39904 * 119.87119 * 359.72719 * 6 5 4 22 22 C 1.50702 * 120.09292 * 180.02562 * 21 6 5 23 23 C 1.37621 * 119.80928 * 359.97438 * 21 6 5 24 24 H 1.09002 * 109.46661 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47023 * 299.99713 * 1 2 3 26 26 H 1.08993 * 109.47396 * 60.00629 * 1 2 3 27 27 H 1.07999 * 119.89665 * 0.02562 * 4 3 2 28 28 H 1.07994 * 119.97301 * 180.30019 * 5 4 3 29 29 H 1.07997 * 120.45753 * 0.02562 * 8 7 6 30 30 H 0.97001 * 119.99893 * 179.97438 * 14 13 11 31 31 H 1.08006 * 120.45962 * 180.02562 * 20 19 10 32 32 H 1.09002 * 109.46507 * 275.29994 * 22 21 6 33 33 H 1.09001 * 109.47229 * 35.29880 * 22 21 6 34 34 H 1.08996 * 109.47038 * 155.30180 * 22 21 6 35 35 H 1.08001 * 120.02678 * 179.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1899 2.6662 -0.0058 5 6 1.4911 3.9982 -0.0001 6 6 2.8267 4.4146 -0.0001 7 6 3.1525 5.8550 -0.0007 8 6 2.6477 6.7075 0.9967 9 7 2.9630 7.9840 0.9661 10 6 3.7442 8.4742 -0.0022 11 6 4.0546 9.8486 -0.0029 12 1 4.6840 10.2596 -0.7784 13 6 3.5470 10.6819 1.0021 14 7 2.7850 10.1846 1.9404 15 14 3.9592 12.5039 1.0015 16 1 3.4704 13.1215 -0.2575 17 1 3.3037 13.1600 2.1612 18 1 5.4305 12.6785 1.0999 19 7 4.2382 7.6949 -0.9699 20 6 3.9701 6.4077 -1.0017 21 6 3.8531 3.4639 -0.0001 22 6 5.2935 3.9069 0.0005 23 6 3.5435 2.1229 0.0003 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 0.1581 2.3475 -0.0099 28 1 0.6977 4.7307 0.0003 29 1 2.0132 6.3188 1.7793 30 1 2.4337 10.7616 2.6365 31 1 4.3727 5.7838 -1.7860 32 1 5.6131 4.1049 -1.0227 33 1 5.3940 4.8152 0.5947 34 1 5.9151 3.1212 0.4297 35 1 4.3330 1.3860 -0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206090768.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:48 Heat of formation + Delta-G solvation = 58.499159 kcal Electronic energy + Delta-G solvation = -19013.003236 eV Core-core repulsion = 16101.645384 eV Total energy + Delta-G solvation = -2911.357851 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.46893 -38.28993 -34.08065 -32.85496 -32.09184 -31.54690 -29.34113 -29.09048 -26.86002 -25.86124 -22.89265 -22.74893 -21.27848 -20.56295 -17.98943 -17.11256 -16.13432 -15.98502 -15.26363 -14.94962 -14.54686 -14.39413 -13.92619 -13.72045 -13.30267 -13.09539 -12.91151 -12.77734 -12.51027 -12.24407 -12.11974 -11.85838 -11.42286 -11.34945 -11.24665 -10.88963 -10.82385 -10.42129 -10.20481 -9.65625 -9.35817 -9.20144 -9.19425 -8.51894 -8.00216 -7.47927 -7.04682 -6.64944 -4.83852 1.40087 1.58292 1.70604 2.45444 2.50269 2.91809 2.97683 3.00479 3.04797 3.77694 4.01125 4.52151 4.91781 4.93035 5.05534 5.13902 5.40553 5.49769 5.57720 5.67407 5.70211 5.80244 5.83956 5.91412 6.00329 6.16316 6.19945 6.29245 6.50151 6.52303 6.70179 6.76312 6.91456 7.05757 7.24807 7.28424 7.56824 8.02519 8.36724 8.43996 9.00123 9.97691 10.15854 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.040324 B = 0.003381 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.216978 B = 8280.350715 C = 8703.822090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.141 6.141 3 C -0.107 4.107 4 C -0.130 4.130 5 C -0.105 4.105 6 C 0.027 3.973 7 C -0.332 4.332 8 C 0.182 3.818 9 N -0.508 5.508 10 C 0.383 3.617 11 C -0.384 4.384 12 H 0.095 0.905 13 C 0.062 3.938 14 N -0.700 5.700 15 Si 0.921 3.079 16 H -0.262 1.262 17 H -0.275 1.275 18 H -0.261 1.261 19 N -0.594 5.594 20 C 0.190 3.810 21 C -0.077 4.077 22 C -0.107 4.107 23 C -0.093 4.093 24 H 0.103 0.897 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.115 0.885 28 H 0.121 0.879 29 H 0.128 0.872 30 H 0.279 0.721 31 H 0.128 0.872 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.035 -12.562 -0.976 12.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.100 5.900 3 C -0.219 4.219 4 C -0.154 4.154 5 C -0.125 4.125 6 C 0.024 3.976 7 C -0.343 4.343 8 C 0.005 3.995 9 N -0.224 5.224 10 C 0.150 3.850 11 C -0.417 4.417 12 H 0.113 0.887 13 C -0.166 4.166 14 N -0.321 5.321 15 Si 0.745 3.255 16 H -0.186 1.186 17 H -0.200 1.200 18 H -0.186 1.186 19 N -0.313 5.313 20 C 0.016 3.984 21 C -0.079 4.079 22 C -0.164 4.164 23 C -0.116 4.116 24 H 0.121 0.879 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.133 0.867 28 H 0.139 0.861 29 H 0.145 0.855 30 H 0.090 0.910 31 H 0.146 0.854 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.272 -12.384 -0.752 12.613 hybrid contribution -1.102 0.751 0.083 1.336 sum -3.374 -11.633 -0.669 12.131 Atomic orbital electron populations 1.23593 0.95096 1.06524 1.05596 1.85218 1.06189 1.04947 1.93676 1.21567 0.96557 0.95165 1.08640 1.20710 0.97492 0.93283 1.03867 1.20954 0.96336 0.94735 1.00478 1.18684 0.91552 0.92348 0.95044 1.19653 1.15858 0.92638 1.06124 1.23024 0.92786 0.89945 0.93727 1.69363 1.16647 1.11045 1.25371 1.19913 0.87068 0.93979 0.84045 1.19369 1.24113 0.89935 1.08314 0.88716 1.26194 0.94014 1.01841 0.94577 1.70135 1.18047 1.36884 1.06996 0.86146 0.80013 0.80386 0.78998 1.18590 1.19963 1.18571 1.68659 1.29028 1.04972 1.28603 1.22616 0.90297 0.91619 0.93890 1.19982 0.95894 0.91875 1.00110 1.20751 0.91537 1.01781 1.02319 1.20465 0.93792 0.95262 1.02089 0.87879 0.89900 0.89918 0.86682 0.86064 0.85487 0.91009 0.85445 0.91385 0.90847 0.92407 0.86196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.14 101.05 0.92 -0.29 16 2 S -0.14 -1.71 22.56 -107.50 -2.43 -4.13 16 3 C -0.11 -1.56 6.13 -38.74 -0.24 -1.80 16 4 C -0.13 -1.89 9.30 -39.76 -0.37 -2.26 16 5 C -0.11 -1.73 9.58 -39.57 -0.38 -2.11 16 6 C 0.03 0.50 5.46 -104.80 -0.57 -0.08 16 7 C -0.33 -7.04 4.55 -104.28 -0.47 -7.51 16 8 C 0.18 4.23 10.94 -16.80 -0.18 4.04 16 9 N -0.51 -13.61 7.82 -12.40 -0.10 -13.71 16 10 C 0.38 10.48 7.35 -158.12 -1.16 9.32 16 11 C -0.38 -10.16 9.34 -37.88 -0.35 -10.51 16 12 H 0.09 2.40 7.85 -52.49 -0.41 1.98 16 13 C 0.06 1.51 5.50 -17.34 -0.10 1.42 16 14 N -0.70 -17.75 11.40 55.55 0.63 -17.12 16 15 Si 0.92 17.79 29.56 -169.99 -5.02 12.77 16 16 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 17 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 18 H -0.26 -4.99 7.11 56.52 0.40 -4.58 16 19 N -0.59 -15.26 10.33 -12.40 -0.13 -15.39 16 20 C 0.19 4.23 9.61 -16.81 -0.16 4.07 16 21 C -0.08 -1.26 5.89 -104.22 -0.61 -1.87 16 22 C -0.11 -1.62 8.60 36.01 0.31 -1.31 16 23 C -0.09 -1.40 9.42 -39.39 -0.37 -1.77 16 24 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16 25 H 0.08 0.69 7.75 -51.92 -0.40 0.29 16 26 H 0.08 0.69 7.73 -51.93 -0.40 0.29 16 27 H 0.12 1.39 5.85 -52.49 -0.31 1.08 16 28 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16 29 H 0.13 2.66 8.06 -52.49 -0.42 2.24 16 30 H 0.28 6.34 8.29 -40.82 -0.34 6.00 16 31 H 0.13 2.48 7.39 -52.48 -0.39 2.09 16 32 H 0.07 0.97 7.60 -51.93 -0.39 0.58 16 33 H 0.07 1.28 7.03 -51.93 -0.37 0.91 16 34 H 0.06 0.74 8.05 -51.93 -0.42 0.32 16 35 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 313.67 15.07 4.73 4.73 Total: -1.00 -28.71 313.67 -9.97 -38.68 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -3.91 Total: 4.84 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -3.74 Total: -10.67 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.41 Total: -46.22 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.02 Total: 12.77 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.43 Total: -4.13 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.71 -9.97 -38.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206090768.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.177 kcal (2) G-P(sol) polarization free energy of solvation -28.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds