Wall clock time and date at job start Tue Mar 31 2020 06:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76199 * 102.99954 * 2 1 4 4 C 1.39377 * 119.93627 * 359.72496 * 3 2 1 5 5 C 1.36556 * 120.19183 * 179.72182 * 4 3 2 6 6 C 1.39899 * 120.06128 * 0.55251 * 5 4 3 7 7 C 1.47674 * 120.06434 * 179.69648 * 6 5 4 8 8 C 1.40576 * 120.79487 * 55.72013 * 7 6 5 9 9 N 1.31526 * 119.07953 * 179.77985 * 8 7 6 10 10 C 1.33718 * 120.83832 * 0.48261 * 9 8 7 11 11 C 1.40908 * 119.11956 * 179.74579 * 10 9 8 12 12 H 1.08002 * 119.99715 * 180.02562 * 11 10 9 13 13 C 1.40074 * 120.00512 * 0.02562 * 11 10 9 14 14 N 1.30707 * 119.99664 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00317 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46832 * 60.00080 * 15 13 11 17 17 H 1.48500 * 109.46865 * 179.97438 * 15 13 11 18 18 H 1.48490 * 109.46975 * 299.99859 * 15 13 11 19 19 N 1.33708 * 121.75512 * 359.76905 * 10 9 8 20 20 C 1.31522 * 120.83702 * 359.97438 * 19 10 9 21 21 C 1.39904 * 119.87119 * 359.72719 * 6 5 4 22 22 C 1.50702 * 120.09292 * 180.02562 * 21 6 5 23 23 C 1.37621 * 119.80928 * 359.97438 * 21 6 5 24 24 H 1.09002 * 109.46661 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47023 * 299.99713 * 1 2 3 26 26 H 1.08993 * 109.47396 * 60.00629 * 1 2 3 27 27 H 1.07999 * 119.89665 * 0.02562 * 4 3 2 28 28 H 1.07994 * 119.97301 * 180.30019 * 5 4 3 29 29 H 1.07997 * 120.45753 * 0.02562 * 8 7 6 30 30 H 0.97001 * 119.99893 * 179.97438 * 14 13 11 31 31 H 1.08006 * 120.45962 * 180.02562 * 20 19 10 32 32 H 1.09002 * 109.46507 * 275.29994 * 22 21 6 33 33 H 1.09001 * 109.47229 * 35.29880 * 22 21 6 34 34 H 1.08996 * 109.47038 * 155.30180 * 22 21 6 35 35 H 1.08001 * 120.02678 * 179.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1899 2.6662 -0.0058 5 6 1.4911 3.9982 -0.0001 6 6 2.8267 4.4146 -0.0001 7 6 3.1525 5.8550 -0.0007 8 6 2.6477 6.7075 0.9967 9 7 2.9630 7.9840 0.9661 10 6 3.7442 8.4742 -0.0022 11 6 4.0546 9.8486 -0.0029 12 1 4.6840 10.2596 -0.7784 13 6 3.5470 10.6819 1.0021 14 7 2.7850 10.1846 1.9404 15 14 3.9592 12.5039 1.0015 16 1 3.4704 13.1215 -0.2575 17 1 3.3037 13.1600 2.1612 18 1 5.4305 12.6785 1.0999 19 7 4.2382 7.6949 -0.9699 20 6 3.9701 6.4077 -1.0017 21 6 3.8531 3.4639 -0.0001 22 6 5.2935 3.9069 0.0005 23 6 3.5435 2.1229 0.0003 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 0.1581 2.3475 -0.0099 28 1 0.6977 4.7307 0.0003 29 1 2.0132 6.3188 1.7793 30 1 2.4337 10.7616 2.6365 31 1 4.3727 5.7838 -1.7860 32 1 5.6131 4.1049 -1.0227 33 1 5.3940 4.8152 0.5947 34 1 5.9151 3.1212 0.4297 35 1 4.3330 1.3860 -0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206090768.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:48 Heat of formation + Delta-G solvation = 44.155402 kcal Electronic energy + Delta-G solvation = -19013.625227 eV Core-core repulsion = 16101.645384 eV Total energy + Delta-G solvation = -2911.979843 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.09520 -39.78979 -35.85008 -34.20635 -33.88761 -33.08923 -30.79691 -30.00038 -28.34316 -27.32389 -24.61892 -24.41914 -22.68952 -21.95855 -19.83272 -18.21696 -17.94883 -17.29498 -16.94777 -16.35103 -16.17338 -15.47555 -14.91833 -14.86297 -14.73618 -14.53825 -14.29862 -14.18601 -13.99521 -13.48914 -13.30277 -13.16468 -13.00305 -12.90871 -12.70292 -12.46215 -12.11308 -11.98803 -11.34434 -11.22601 -11.16495 -10.94308 -10.66724 -9.78111 -9.64287 -9.28419 -8.49264 -8.19098 -6.74941 0.05214 0.47961 0.64689 0.79063 1.05680 1.39511 1.52643 1.53120 1.53668 2.18075 2.64982 2.79974 3.81589 3.93026 3.94190 3.98383 4.01382 4.08188 4.29203 4.30233 4.32206 4.40125 4.47003 4.66164 4.77035 4.87196 4.92862 4.95514 5.02010 5.11142 5.25489 5.29176 5.36797 5.43939 5.77662 5.84282 6.00093 6.10514 6.47948 6.56689 7.14340 8.17051 8.31022 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.040324 B = 0.003381 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.216978 B = 8280.350715 C = 8703.822090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.144 6.144 3 C -0.103 4.103 4 C -0.130 4.130 5 C -0.107 4.107 6 C -0.008 4.008 7 C -0.303 4.303 8 C 0.162 3.838 9 N -0.539 5.539 10 C 0.357 3.643 11 C -0.426 4.426 12 H 0.092 0.908 13 C 0.022 3.978 14 N -0.738 5.738 15 Si 1.001 2.999 16 H -0.257 1.257 17 H -0.261 1.261 18 H -0.257 1.257 19 N -0.619 5.619 20 C 0.180 3.820 21 C -0.076 4.076 22 C -0.104 4.104 23 C -0.099 4.099 24 H 0.127 0.873 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.143 0.857 28 H 0.121 0.879 29 H 0.144 0.856 30 H 0.287 0.713 31 H 0.155 0.845 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.083 0.917 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.790 -14.654 -1.106 15.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.097 5.903 3 C -0.216 4.216 4 C -0.153 4.153 5 C -0.127 4.127 6 C -0.012 4.012 7 C -0.313 4.313 8 C -0.012 4.012 9 N -0.256 5.256 10 C 0.122 3.878 11 C -0.460 4.460 12 H 0.110 0.890 13 C -0.202 4.202 14 N -0.360 5.360 15 Si 0.819 3.181 16 H -0.181 1.181 17 H -0.185 1.185 18 H -0.181 1.181 19 N -0.338 5.338 20 C 0.007 3.993 21 C -0.078 4.078 22 C -0.161 4.161 23 C -0.122 4.122 24 H 0.145 0.855 25 H 0.108 0.892 26 H 0.109 0.891 27 H 0.161 0.839 28 H 0.139 0.861 29 H 0.161 0.839 30 H 0.098 0.902 31 H 0.172 0.828 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.101 0.899 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.044 -14.561 -0.887 14.903 hybrid contribution -0.965 0.979 0.089 1.378 sum -4.009 -13.582 -0.798 14.184 Atomic orbital electron populations 1.23760 0.91964 1.08425 1.06349 1.85312 1.09633 1.02327 1.93035 1.21927 0.96461 0.97059 1.06122 1.20956 0.99020 0.92305 1.03055 1.21001 0.95521 0.95898 1.00246 1.18589 0.93044 0.90689 0.98870 1.19840 1.13139 0.94242 1.04036 1.23415 0.93333 0.89637 0.94842 1.69312 1.17634 1.12740 1.25933 1.20286 0.87841 0.94877 0.84784 1.19669 1.25959 0.90515 1.09841 0.88997 1.27121 0.93227 1.06486 0.93402 1.70200 1.19059 1.38938 1.07776 0.84987 0.79833 0.73859 0.79397 1.18133 1.18521 1.18119 1.68660 1.29996 1.06406 1.28763 1.23090 0.90450 0.90966 0.94781 1.20074 0.95838 0.92348 0.99533 1.20734 0.91628 1.01270 1.02477 1.20684 0.94822 0.94877 1.01845 0.85458 0.89167 0.89120 0.83936 0.86134 0.83881 0.90237 0.82823 0.90584 0.93769 0.89861 0.84292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.14 113.37 1.04 -0.77 16 2 S -0.14 -2.99 22.56 -56.49 -1.27 -4.27 16 3 C -0.10 -2.71 6.13 22.82 0.14 -2.57 16 4 C -0.13 -3.42 9.30 22.15 0.21 -3.22 16 5 C -0.11 -3.37 9.58 22.28 0.21 -3.16 16 6 C -0.01 -0.29 5.46 -19.98 -0.11 -0.40 16 7 C -0.30 -13.06 4.55 -19.65 -0.09 -13.15 16 8 C 0.16 7.80 10.94 85.31 0.93 8.73 16 9 N -0.54 -30.20 7.82 -193.15 -1.51 -31.71 16 10 C 0.36 20.48 7.35 134.82 0.99 21.48 16 11 C -0.43 -23.61 9.34 23.37 0.22 -23.39 16 12 H 0.09 4.90 7.85 -2.91 -0.02 4.88 16 13 C 0.02 1.11 5.50 85.31 0.47 1.58 16 14 N -0.74 -38.74 11.40 21.84 0.25 -38.49 16 15 Si 1.00 37.12 29.56 68.60 2.03 39.14 16 16 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 17 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 18 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 19 N -0.62 -33.07 10.33 -193.15 -2.00 -35.06 16 20 C 0.18 8.17 9.61 85.31 0.82 8.99 16 21 C -0.08 -2.39 5.89 -19.61 -0.12 -2.51 16 22 C -0.10 -3.06 8.60 71.24 0.61 -2.45 16 23 C -0.10 -2.73 9.42 22.39 0.21 -2.52 16 24 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.09 1.12 7.75 -2.39 -0.02 1.10 16 26 H 0.09 1.12 7.73 -2.39 -0.02 1.10 16 27 H 0.14 2.91 5.85 -2.91 -0.02 2.89 16 28 H 0.12 3.74 8.06 -2.91 -0.02 3.72 16 29 H 0.14 6.18 8.06 -2.91 -0.02 6.16 16 30 H 0.29 13.38 8.29 -92.71 -0.77 12.61 16 31 H 0.15 5.97 7.39 -2.91 -0.02 5.95 16 32 H 0.08 2.09 7.60 -2.39 -0.02 2.07 16 33 H 0.04 1.55 7.03 -2.39 -0.02 1.53 16 34 H 0.08 1.98 8.05 -2.39 -0.02 1.96 16 35 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -64.94 313.67 4.14 -60.80 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 1.11 Total: 22.96 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: 5.54 Total: -13.37 kcal Atomic # 7 Polarization: -102.00 SS G_CDS: -3.26 Total: -105.26 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.14 kcal Atomic # 16 Polarization: -2.99 SS G_CDS: -1.27 Total: -4.27 kcal Total: -64.94 4.14 -60.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206090768.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.955 kcal (2) G-P(sol) polarization free energy of solvation -64.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds