Wall clock time and date at job start Tue Mar 31 2020 06:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76202 * 103.00389 * 2 1 4 4 C 1.39061 * 120.45286 * 359.97438 * 3 2 1 5 5 N 1.31775 * 120.80952 * 180.02562 * 4 3 2 6 6 C 1.31819 * 121.88392 * 0.02562 * 5 4 3 7 7 C 1.38977 * 120.82955 * 359.97438 * 6 5 4 8 8 N 1.39748 * 120.44979 * 180.27604 * 7 6 5 9 9 C 1.39716 * 120.00119 * 154.69469 * 8 7 6 10 10 C 1.39348 * 119.95347 * 328.09327 * 9 8 7 11 11 C 1.38470 * 120.42202 * 179.72149 * 10 9 8 12 12 C 1.37689 * 120.32716 * 0.54648 * 11 10 9 13 13 C 1.40760 * 119.89784 * 359.72771 * 12 11 10 14 14 C 1.41405 * 120.20883 * 179.97438 * 13 12 11 15 15 H 1.07993 * 120.00284 * 27.49889 * 14 13 12 16 16 C 1.39929 * 119.99610 * 207.50725 * 14 13 12 17 17 N 1.30827 * 120.00491 * 12.21326 * 16 14 13 18 18 Si 1.86802 * 119.99805 * 192.22097 * 16 14 13 19 19 H 1.48501 * 109.47118 * 59.99889 * 18 16 14 20 20 H 1.48501 * 109.47011 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47149 * 299.99834 * 18 16 14 22 22 C 1.38296 * 119.95125 * 148.35639 * 9 8 7 23 23 C 1.39169 * 119.10011 * 0.02562 * 7 6 5 24 24 H 1.09006 * 109.46969 * 299.99830 * 1 2 3 25 25 H 1.09001 * 109.47233 * 59.99465 * 1 2 3 26 26 H 1.08997 * 109.46984 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.59296 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.58495 * 179.97438 * 6 5 4 29 29 H 0.96999 * 119.99821 * 334.69643 * 8 7 6 30 30 H 1.08007 * 119.78964 * 359.97164 * 10 9 8 31 31 H 1.08006 * 119.83796 * 180.27402 * 11 10 9 32 32 H 1.08003 * 120.05845 * 179.70405 * 12 11 10 33 33 H 0.96996 * 120.00650 * 180.02562 * 17 16 14 34 34 H 1.08002 * 120.16338 * 359.97438 * 22 9 8 35 35 H 1.07997 * 120.85229 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 1.2010 2.6733 -0.0005 5 7 1.4896 3.9591 -0.0010 6 6 2.7342 4.3934 -0.0016 7 6 3.7998 3.5013 -0.0011 8 7 5.1162 3.9705 0.0042 9 6 6.1400 3.1731 0.5220 10 6 5.8753 2.2962 1.5722 11 6 6.8813 1.4973 2.0890 12 6 8.1578 1.5690 1.5778 13 6 8.4416 2.4541 0.5208 14 6 9.7503 2.5334 -0.0089 15 1 10.4069 1.6776 0.0436 16 6 10.1947 3.7209 -0.6009 17 7 9.5035 4.8223 -0.4568 18 14 11.7747 3.7335 -1.5972 19 1 11.6489 2.7896 -2.7368 20 1 12.0227 5.1032 -2.1146 21 1 12.9083 3.3176 -0.7329 22 6 7.4158 3.2592 -0.0048 23 6 3.5382 2.1344 -0.0006 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 0.1680 2.3584 -0.0014 28 1 2.9282 5.4558 -0.0024 29 1 5.3191 4.8497 -0.3517 30 1 4.8782 2.2364 1.9830 31 1 6.6647 0.8178 2.9001 32 1 8.9403 0.9473 1.9874 33 1 9.8112 5.6453 -0.8675 34 1 7.6230 3.9412 -0.8161 35 1 4.3448 1.4162 -0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211071664.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:53 Heat of formation + Delta-G solvation = 54.867071 kcal Electronic energy + Delta-G solvation = -19060.492510 eV Core-core repulsion = 16148.977160 eV Total energy + Delta-G solvation = -2911.515350 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.06851 -37.94824 -35.36445 -33.47973 -31.99063 -30.54983 -29.65055 -29.11696 -27.32871 -25.42504 -23.57210 -22.82986 -21.11708 -20.26142 -17.92934 -17.39699 -16.80163 -16.46432 -15.53682 -15.44240 -14.78833 -14.59263 -14.31951 -14.16802 -13.62242 -13.25562 -12.88094 -12.86148 -12.73490 -12.46378 -11.93164 -11.86606 -11.44631 -11.16702 -11.01285 -10.77764 -10.64845 -10.31948 -10.25605 -9.88423 -9.71872 -9.28504 -9.23350 -8.30701 -7.48847 -7.44772 -6.88710 -6.53280 -4.48305 1.18821 1.45400 1.52791 2.35564 2.72319 2.94022 3.02673 3.05498 3.15938 3.80973 3.88103 3.98275 4.57090 4.70473 4.89715 4.91081 5.06287 5.20461 5.41035 5.45524 5.50686 5.57253 6.10880 6.14306 6.33093 6.40512 6.52575 6.72904 6.95237 6.96632 7.16279 7.19395 7.56662 7.71308 7.83816 7.96597 8.12605 8.24952 8.26126 8.57616 8.81219 8.85619 10.13517 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.025301 B = 0.003902 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.397760 B = 7174.598996 C = 7675.639791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 S -0.102 6.102 3 C -0.102 4.102 4 C 0.024 3.976 5 N -0.438 5.438 6 C 0.024 3.976 7 C 0.185 3.815 8 N -0.671 5.671 9 C 0.163 3.837 10 C -0.266 4.266 11 C -0.075 4.075 12 C -0.234 4.234 13 C 0.128 3.872 14 C -0.461 4.461 15 H 0.078 0.922 16 C 0.075 3.925 17 N -0.800 5.800 18 Si 0.911 3.089 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.187 4.187 23 C -0.111 4.111 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.107 0.893 27 H 0.147 0.853 28 H 0.154 0.846 29 H 0.407 0.593 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.280 0.720 34 H 0.125 0.875 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.221 -3.477 -1.017 12.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 S 0.138 5.862 3 C -0.217 4.217 4 C -0.141 4.141 5 N -0.146 5.146 6 C -0.140 4.140 7 C 0.077 3.923 8 N -0.292 5.292 9 C 0.069 3.931 10 C -0.287 4.287 11 C -0.093 4.093 12 C -0.254 4.254 13 C 0.125 3.875 14 C -0.491 4.491 15 H 0.097 0.903 16 C -0.142 4.142 17 N -0.426 5.426 18 Si 0.735 3.265 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.190 1.190 22 C -0.209 4.209 23 C -0.146 4.146 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.125 0.875 27 H 0.165 0.835 28 H 0.171 0.829 29 H 0.244 0.756 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.142 0.858 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.179 -3.746 -1.022 12.783 hybrid contribution 0.712 1.026 -0.490 1.342 sum -11.467 -2.721 -1.512 11.882 Atomic orbital electron populations 1.23674 0.95349 1.06978 1.05719 1.85598 1.05599 1.02562 1.92412 1.22563 0.97015 0.97672 1.04460 1.22392 0.98007 0.88087 1.05610 1.67382 1.21256 1.16518 1.09407 1.22343 0.86733 0.99487 1.05483 1.18747 0.86276 0.92907 0.94348 1.42191 1.02581 1.19568 1.64831 1.17617 0.87542 0.93971 0.93963 1.20180 0.98759 1.06761 1.03038 1.20362 0.93224 0.97623 0.98132 1.21041 0.95689 1.07099 1.01564 1.17391 0.92509 0.89110 0.88538 1.19555 0.98208 0.98249 1.33080 0.90337 1.25892 0.98857 0.94922 0.94533 1.69775 1.37863 0.99990 1.34923 0.86321 0.81512 0.78148 0.80476 1.18848 1.20347 1.18978 1.21104 0.90082 1.06491 1.03227 1.21058 0.95202 0.95106 1.03248 0.89699 0.89721 0.87457 0.83540 0.82918 0.75645 0.89058 0.88975 0.88782 0.90888 0.85756 0.83362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.16 101.05 0.93 -0.29 16 2 S -0.10 -1.29 22.58 -107.50 -2.43 -3.72 16 3 C -0.10 -1.54 6.13 -38.92 -0.24 -1.78 16 4 C 0.02 0.34 10.54 -17.27 -0.18 0.16 16 5 N -0.44 -6.89 10.34 -12.88 -0.13 -7.02 16 6 C 0.02 0.38 11.10 -17.28 -0.19 0.19 16 7 C 0.18 3.18 6.07 -83.63 -0.51 2.67 16 8 N -0.67 -12.38 5.47 -8.38 -0.05 -12.43 16 9 C 0.16 3.58 5.94 -83.83 -0.50 3.08 16 10 C -0.27 -5.78 7.77 -39.08 -0.30 -6.08 16 11 C -0.07 -1.63 10.01 -39.70 -0.40 -2.03 16 12 C -0.23 -5.56 9.79 -38.83 -0.38 -5.94 16 13 C 0.13 3.28 5.56 -106.85 -0.59 2.68 16 14 C -0.46 -11.83 9.06 -37.74 -0.34 -12.17 16 15 H 0.08 1.93 7.87 -52.49 -0.41 1.52 16 16 C 0.07 1.82 5.23 -17.35 -0.09 1.73 16 17 N -0.80 -19.82 10.83 55.55 0.60 -19.22 16 18 Si 0.91 18.20 29.58 -169.99 -5.03 13.17 16 19 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 20 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 21 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 22 C -0.19 -4.59 8.57 -38.67 -0.33 -4.92 16 23 C -0.11 -1.93 7.72 -38.88 -0.30 -2.23 16 24 H 0.08 0.64 7.76 -51.92 -0.40 0.23 16 25 H 0.08 0.63 7.76 -51.92 -0.40 0.22 16 26 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.15 1.68 5.90 -52.49 -0.31 1.38 16 28 H 0.15 2.02 8.06 -52.49 -0.42 1.60 16 29 H 0.41 6.77 8.90 -40.82 -0.36 6.41 16 30 H 0.09 1.90 6.56 -52.48 -0.34 1.55 16 31 H 0.09 1.77 8.06 -52.48 -0.42 1.34 16 32 H 0.09 2.11 8.06 -52.48 -0.42 1.68 16 33 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 34 H 0.12 3.15 6.18 -52.49 -0.32 2.82 16 35 H 0.15 2.81 6.42 -52.49 -0.34 2.48 16 LS Contribution 310.74 15.07 4.68 4.68 Total: -1.00 -27.16 310.74 -9.50 -36.67 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -3.72 Total: 12.80 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: -3.43 Total: -24.93 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.42 Total: -38.67 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.17 kcal Atomic # 16 Polarization: -1.29 SS G_CDS: -2.43 Total: -3.72 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.16 -9.50 -36.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211071664.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.534 kcal (2) G-P(sol) polarization free energy of solvation -27.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds