Wall clock time and date at job start Tue Mar 31 2020 06:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76202 * 103.00389 * 2 1 4 4 C 1.39061 * 120.45286 * 359.97438 * 3 2 1 5 5 N 1.31775 * 120.80952 * 180.02562 * 4 3 2 6 6 C 1.31819 * 121.88392 * 0.02562 * 5 4 3 7 7 C 1.38977 * 120.82955 * 359.97438 * 6 5 4 8 8 N 1.39748 * 120.44979 * 180.27604 * 7 6 5 9 9 C 1.39716 * 120.00119 * 154.69469 * 8 7 6 10 10 C 1.39348 * 119.95347 * 328.09327 * 9 8 7 11 11 C 1.38470 * 120.42202 * 179.72149 * 10 9 8 12 12 C 1.37689 * 120.32716 * 0.54648 * 11 10 9 13 13 C 1.40760 * 119.89784 * 359.72771 * 12 11 10 14 14 C 1.41405 * 120.20883 * 179.97438 * 13 12 11 15 15 H 1.07993 * 120.00284 * 27.49889 * 14 13 12 16 16 C 1.39929 * 119.99610 * 207.50725 * 14 13 12 17 17 N 1.30827 * 120.00491 * 12.21326 * 16 14 13 18 18 Si 1.86802 * 119.99805 * 192.22097 * 16 14 13 19 19 H 1.48501 * 109.47118 * 59.99889 * 18 16 14 20 20 H 1.48501 * 109.47011 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47149 * 299.99834 * 18 16 14 22 22 C 1.38296 * 119.95125 * 148.35639 * 9 8 7 23 23 C 1.39169 * 119.10011 * 0.02562 * 7 6 5 24 24 H 1.09006 * 109.46969 * 299.99830 * 1 2 3 25 25 H 1.09001 * 109.47233 * 59.99465 * 1 2 3 26 26 H 1.08997 * 109.46984 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.59296 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.58495 * 179.97438 * 6 5 4 29 29 H 0.96999 * 119.99821 * 334.69643 * 8 7 6 30 30 H 1.08007 * 119.78964 * 359.97164 * 10 9 8 31 31 H 1.08006 * 119.83796 * 180.27402 * 11 10 9 32 32 H 1.08003 * 120.05845 * 179.70405 * 12 11 10 33 33 H 0.96996 * 120.00650 * 180.02562 * 17 16 14 34 34 H 1.08002 * 120.16338 * 359.97438 * 22 9 8 35 35 H 1.07997 * 120.85229 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 1.2010 2.6733 -0.0005 5 7 1.4896 3.9591 -0.0010 6 6 2.7342 4.3934 -0.0016 7 6 3.7998 3.5013 -0.0011 8 7 5.1162 3.9705 0.0042 9 6 6.1400 3.1731 0.5220 10 6 5.8753 2.2962 1.5722 11 6 6.8813 1.4973 2.0890 12 6 8.1578 1.5690 1.5778 13 6 8.4416 2.4541 0.5208 14 6 9.7503 2.5334 -0.0089 15 1 10.4069 1.6776 0.0436 16 6 10.1947 3.7209 -0.6009 17 7 9.5035 4.8223 -0.4568 18 14 11.7747 3.7335 -1.5972 19 1 11.6489 2.7896 -2.7368 20 1 12.0227 5.1032 -2.1146 21 1 12.9083 3.3176 -0.7329 22 6 7.4158 3.2592 -0.0048 23 6 3.5382 2.1344 -0.0006 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 0.1680 2.3584 -0.0014 28 1 2.9282 5.4558 -0.0024 29 1 5.3191 4.8497 -0.3517 30 1 4.8782 2.2364 1.9830 31 1 6.6647 0.8178 2.9001 32 1 8.9403 0.9473 1.9874 33 1 9.8112 5.6453 -0.8675 34 1 7.6230 3.9412 -0.8161 35 1 4.3448 1.4162 -0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211071664.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:53 Heat of formation + Delta-G solvation = 41.025910 kcal Electronic energy + Delta-G solvation = -19061.092708 eV Core-core repulsion = 16148.977160 eV Total energy + Delta-G solvation = -2912.115548 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.37922 -39.59703 -36.92976 -35.25539 -33.22663 -31.91709 -31.46591 -30.03463 -28.75259 -27.25346 -24.86005 -24.16641 -22.87502 -21.93315 -19.45917 -18.88465 -18.08367 -17.84497 -17.12483 -16.73145 -16.43215 -16.24084 -15.39496 -15.25463 -14.98205 -14.58770 -14.31109 -14.26923 -14.10802 -13.58477 -13.48822 -13.17380 -13.00500 -12.84707 -12.73936 -12.25889 -11.94041 -11.81137 -11.60693 -11.52149 -11.36389 -11.06618 -10.43864 -9.86101 -9.32486 -8.67505 -8.50190 -8.14180 -6.39514 -0.03859 0.21011 0.48270 0.98851 1.16401 1.39186 1.46938 1.49699 1.53802 2.21230 2.37159 2.67834 2.81263 3.60166 3.70713 3.87282 3.90759 4.11942 4.26868 4.31640 4.34904 4.45559 4.62109 4.85526 4.86918 4.95124 5.03271 5.12922 5.15255 5.27478 5.40453 5.52594 5.84286 5.97014 6.07742 6.11405 6.44405 6.73113 6.75636 6.92561 6.94613 7.02340 8.34732 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.025301 B = 0.003902 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.397760 B = 7174.598996 C = 7675.639791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.131 6.131 3 C -0.102 4.102 4 C 0.033 3.967 5 N -0.447 5.447 6 C 0.030 3.970 7 C 0.167 3.833 8 N -0.672 5.672 9 C 0.175 3.825 10 C -0.265 4.265 11 C -0.072 4.072 12 C -0.255 4.255 13 C 0.100 3.900 14 C -0.499 4.499 15 H 0.076 0.924 16 C 0.036 3.964 17 N -0.826 5.826 18 Si 0.981 3.019 19 H -0.262 1.262 20 H -0.268 1.268 21 H -0.261 1.261 22 C -0.212 4.212 23 C -0.128 4.128 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.131 0.869 27 H 0.181 0.819 28 H 0.175 0.825 29 H 0.414 0.586 30 H 0.103 0.897 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.287 0.713 34 H 0.109 0.891 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.351 -3.717 -1.107 14.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.110 5.890 3 C -0.217 4.217 4 C -0.132 4.132 5 N -0.155 5.155 6 C -0.134 4.134 7 C 0.061 3.939 8 N -0.294 5.294 9 C 0.080 3.920 10 C -0.286 4.286 11 C -0.091 4.091 12 C -0.275 4.275 13 C 0.097 3.903 14 C -0.528 4.528 15 H 0.094 0.906 16 C -0.178 4.178 17 N -0.452 5.452 18 Si 0.802 3.198 19 H -0.187 1.187 20 H -0.192 1.192 21 H -0.185 1.185 22 C -0.235 4.235 23 C -0.163 4.163 24 H 0.116 0.884 25 H 0.116 0.884 26 H 0.149 0.851 27 H 0.198 0.802 28 H 0.192 0.808 29 H 0.251 0.749 30 H 0.121 0.879 31 H 0.139 0.861 32 H 0.117 0.883 33 H 0.097 0.903 34 H 0.127 0.873 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.361 -3.992 -1.109 14.947 hybrid contribution 1.079 1.001 -0.424 1.532 sum -13.282 -2.991 -1.533 13.701 Atomic orbital electron populations 1.23844 0.90828 1.08972 1.06980 1.85764 1.10540 1.00810 1.91925 1.22728 0.96227 0.99379 1.03412 1.22968 0.99339 0.87477 1.03380 1.67492 1.20954 1.17232 1.09812 1.22635 0.86254 1.00294 1.04246 1.18868 0.85843 0.93296 0.95861 1.42033 1.02557 1.19521 1.65329 1.17624 0.87570 0.93516 0.93280 1.20359 0.99195 1.06434 1.02650 1.20680 0.92438 0.97589 0.98369 1.21196 0.96849 1.07552 1.01900 1.17758 0.93102 0.90071 0.89403 1.19813 0.98728 0.99098 1.35203 0.90580 1.26691 1.02109 0.94092 0.94956 1.69835 1.39420 1.00537 1.35441 0.85258 0.77303 0.78472 0.78718 1.18669 1.19242 1.18490 1.21012 0.91244 1.07327 1.03880 1.21004 0.95859 0.94862 1.04583 0.88417 0.88377 0.85116 0.80227 0.80823 0.74902 0.87928 0.86057 0.88252 0.90258 0.87266 0.85618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.16 113.37 1.04 -0.67 16 2 S -0.13 -3.08 22.58 -56.49 -1.28 -4.35 16 3 C -0.10 -2.93 6.13 22.70 0.14 -2.79 16 4 C 0.03 0.86 10.54 84.90 0.89 1.75 16 5 N -0.45 -12.95 10.34 -194.65 -2.01 -14.96 16 6 C 0.03 0.88 11.10 84.87 0.94 1.82 16 7 C 0.17 5.66 6.07 38.28 0.23 5.89 16 8 N -0.67 -25.11 5.47 -180.42 -0.99 -26.10 16 9 C 0.18 7.91 5.94 38.17 0.23 8.13 16 10 C -0.26 -11.56 7.77 22.59 0.18 -11.39 16 11 C -0.07 -3.16 10.01 22.20 0.22 -2.94 16 12 C -0.25 -12.46 9.79 22.76 0.22 -12.24 16 13 C 0.10 5.33 5.56 -21.31 -0.12 5.21 16 14 C -0.50 -26.64 9.06 23.46 0.21 -26.43 16 15 H 0.08 3.92 7.87 -2.91 -0.02 3.90 16 16 C 0.04 1.79 5.23 85.25 0.45 2.23 16 17 N -0.83 -42.14 10.83 21.82 0.24 -41.90 16 18 Si 0.98 37.83 29.58 68.60 2.03 39.86 16 19 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 20 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 21 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 22 C -0.21 -10.87 8.57 22.86 0.20 -10.67 16 23 C -0.13 -4.40 7.72 22.72 0.18 -4.22 16 24 H 0.10 1.03 7.76 -2.39 -0.02 1.01 16 25 H 0.10 1.02 7.76 -2.39 -0.02 1.00 16 26 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.18 3.35 5.90 -2.91 -0.02 3.33 16 28 H 0.17 4.27 8.06 -2.91 -0.02 4.25 16 29 H 0.41 14.01 8.90 -92.71 -0.82 13.19 16 30 H 0.10 4.22 6.56 -2.91 -0.02 4.20 16 31 H 0.12 4.51 8.06 -2.91 -0.02 4.48 16 32 H 0.10 4.59 8.06 -2.91 -0.02 4.57 16 33 H 0.29 13.28 8.30 -92.71 -0.77 12.51 16 34 H 0.11 5.83 6.18 -2.91 -0.02 5.81 16 35 H 0.13 4.88 6.42 -2.91 -0.02 4.87 16 Total: -1.00 -60.24 310.74 3.30 -56.94 By element: Atomic # 1 Polarization: 36.50 SS G_CDS: 0.30 Total: 36.80 kcal Atomic # 6 Polarization: -51.30 SS G_CDS: 5.01 Total: -46.30 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -2.76 Total: -82.96 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.86 kcal Atomic # 16 Polarization: -3.08 SS G_CDS: -1.28 Total: -4.35 kcal Total: -60.24 3.30 -56.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211071664.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.967 kcal (2) G-P(sol) polarization free energy of solvation -60.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds