Wall clock time and date at job start Tue Mar 31 2020 05:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35893 * 117.00431 * 2 1 4 4 C 1.38679 * 119.99749 * 359.97438 * 3 2 1 5 5 C 1.38676 * 119.99525 * 180.02562 * 4 3 2 6 6 O 1.35898 * 119.99836 * 179.97438 * 5 4 3 7 7 C 1.42909 * 116.99689 * 0.02562 * 6 5 4 8 8 C 1.38667 * 120.00452 * 359.97438 * 5 4 3 9 9 C 1.38679 * 120.00022 * 0.02562 * 8 5 4 10 10 O 1.35890 * 120.00300 * 179.97438 * 9 8 5 11 11 C 1.42899 * 117.00011 * 356.04657 * 10 9 8 12 12 H 1.08997 * 109.47310 * 27.13676 * 11 10 9 13 13 C 1.50703 * 109.47527 * 147.14160 * 11 10 9 14 14 H 1.07998 * 119.99648 * 34.54877 * 13 11 10 15 15 C 1.37878 * 120.00160 * 214.55612 * 13 11 10 16 16 N 1.31509 * 119.99827 * 184.22059 * 15 13 11 17 17 Si 1.86796 * 119.99759 * 4.21330 * 15 13 11 18 18 H 1.48500 * 109.47433 * 94.09665 * 17 15 13 19 19 H 1.48503 * 109.47235 * 214.09404 * 17 15 13 20 20 H 1.48498 * 109.47628 * 334.09599 * 17 15 13 21 21 C 1.53003 * 109.46946 * 267.13822 * 11 10 9 22 22 Cl 1.80301 * 109.46953 * 64.88449 * 21 11 10 23 23 C 1.38673 * 119.99760 * 180.27299 * 3 2 1 24 24 H 1.08989 * 109.47742 * 180.02562 * 1 2 3 25 25 H 1.09010 * 109.47121 * 300.00458 * 1 2 3 26 26 H 1.09005 * 109.47035 * 59.99446 * 1 2 3 27 27 H 1.07999 * 119.99953 * 359.97438 * 4 3 2 28 28 H 1.09002 * 109.46775 * 179.97438 * 7 6 5 29 29 H 1.08997 * 109.47039 * 299.99430 * 7 6 5 30 30 H 1.08999 * 109.46962 * 59.99740 * 7 6 5 31 31 H 1.07995 * 120.00474 * 179.97438 * 8 5 4 32 32 H 0.97005 * 119.99936 * 179.97438 * 16 15 13 33 33 H 1.09001 * 109.46978 * 304.88604 * 21 11 10 34 34 H 1.08999 * 109.47145 * 184.88178 * 21 11 10 35 35 H 1.08001 * 120.00417 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2908 2.3739 -0.0005 5 6 1.9205 3.6094 -0.0011 6 8 1.1804 4.7492 -0.0021 7 6 -0.2408 4.5999 -0.0021 8 6 3.3053 3.6819 -0.0005 9 6 4.0605 2.5188 0.0000 10 8 5.4176 2.5898 0.0000 11 6 5.9991 3.8922 -0.0884 12 1 5.3099 4.6268 0.3280 13 6 7.2909 3.9193 0.6872 14 1 7.9193 3.0415 0.7204 15 6 7.6705 5.0645 1.3545 16 7 8.8359 5.1160 1.9619 17 14 6.5297 6.5430 1.3957 18 1 5.7062 6.4987 2.6306 19 1 7.3353 7.7905 1.3826 20 1 5.6405 6.5156 0.2066 21 6 6.2776 4.2279 -1.5549 22 17 4.7181 4.3366 -2.4532 23 6 3.4309 1.2832 -0.0057 24 1 -0.3634 -1.0275 0.0005 25 1 -0.3634 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.2123 2.3174 -0.0014 28 1 -0.7095 5.5840 -0.0025 29 1 -0.5484 4.0502 -0.8916 30 1 -0.5485 4.0516 0.8884 31 1 3.7957 4.6441 -0.0014 32 1 9.1031 5.9218 2.4310 33 1 6.8968 3.4463 -1.9952 34 1 6.7995 5.1828 -1.6162 35 1 4.0190 0.3774 -0.0098 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225306265.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:41 Heat of formation + Delta-G solvation = -92.876254 kcal Electronic energy + Delta-G solvation = -20885.531479 eV Core-core repulsion = 17490.131026 eV Total energy + Delta-G solvation = -3395.400453 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.080 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.37966 -38.70234 -38.56724 -35.55627 -34.95295 -33.17954 -30.75157 -29.95698 -28.92195 -27.71636 -26.53549 -25.35599 -22.72114 -21.87178 -20.36035 -18.86434 -17.42193 -16.85498 -16.18808 -15.88140 -15.71074 -15.54360 -15.40652 -14.87632 -14.59199 -14.25339 -13.68581 -13.19728 -12.99227 -12.82255 -12.43855 -12.26384 -12.21239 -11.68997 -11.53750 -11.49712 -11.17332 -11.10950 -10.89152 -10.74013 -10.21011 -10.04556 -9.71044 -9.39628 -9.28784 -8.88493 -7.72501 -7.57153 -6.46046 -4.53783 1.82072 1.84328 2.98360 3.11872 3.16219 3.19480 3.20614 3.41838 4.08585 4.13090 4.23457 4.90232 4.96921 5.02158 5.07749 5.11679 5.16429 5.35081 5.37396 5.43212 5.50617 5.65197 5.81014 5.89646 5.97829 6.03974 6.45704 6.51401 6.57267 6.69896 6.95423 7.16947 7.34462 7.68329 7.91379 8.35335 8.67529 9.10593 10.64281 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.018360 B = 0.005894 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.715980 B = 4749.720227 C = 5051.991340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.314 6.314 3 C 0.191 3.809 4 C -0.344 4.344 5 C 0.194 3.806 6 O -0.314 6.314 7 C 0.030 3.970 8 C -0.262 4.262 9 C 0.227 3.773 10 O -0.292 6.292 11 C 0.171 3.829 12 H 0.057 0.943 13 C -0.523 4.523 14 H 0.091 0.909 15 C 0.088 3.912 16 N -0.869 5.869 17 Si 0.859 3.141 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.255 1.255 21 C -0.039 4.039 22 Cl -0.225 7.225 23 C -0.229 4.229 24 H 0.097 0.903 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.127 0.873 28 H 0.096 0.904 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.140 0.860 32 H 0.274 0.726 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.524 -3.072 -4.391 17.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.227 6.227 3 C 0.146 3.854 4 C -0.363 4.363 5 C 0.148 3.852 6 O -0.227 6.227 7 C -0.066 4.066 8 C -0.282 4.282 9 C 0.178 3.822 10 O -0.204 6.204 11 C 0.115 3.885 12 H 0.075 0.925 13 C -0.560 4.560 14 H 0.109 0.891 15 C -0.119 4.119 16 N -0.504 5.504 17 Si 0.684 3.316 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.179 1.179 21 C -0.102 4.102 22 Cl -0.199 7.199 23 C -0.249 4.249 24 H 0.115 0.885 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.145 0.855 28 H 0.115 0.885 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.158 0.842 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.181 -3.080 -4.331 17.031 hybrid contribution -1.075 1.085 0.012 1.528 sum -17.256 -1.995 -4.318 17.900 Atomic orbital electron populations 1.22991 0.78901 1.03466 1.01156 1.86051 1.20947 1.27094 1.88655 1.18152 0.91134 0.83181 0.92969 1.20899 0.99682 0.91868 1.23899 1.18284 0.90358 0.84136 0.92374 1.86099 1.18599 1.29503 1.88478 1.22989 0.79160 1.03373 1.01040 1.20485 0.91086 0.99749 1.16838 1.18343 0.84327 0.91662 0.87826 1.86324 1.14393 1.34598 1.85105 1.21006 0.95248 0.80912 0.91294 0.92519 1.20680 1.02465 1.01537 1.31319 0.89062 1.24940 0.95057 0.98307 0.93563 1.69838 1.19410 1.29071 1.32068 0.87085 0.81602 0.82599 0.80330 1.19089 1.20117 1.17905 1.25926 0.84970 1.04677 0.94619 1.98681 1.41801 1.99086 1.80344 1.19302 0.90912 0.96999 1.17685 0.88486 0.92882 0.92912 0.85515 0.88550 0.92948 0.92905 0.84229 0.91595 0.88714 0.88392 0.84670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.31 -4.57 10.49 -19.40 -0.20 -4.78 16 3 C 0.19 3.19 6.68 -39.26 -0.26 2.93 16 4 C -0.34 -5.37 8.02 -39.26 -0.31 -5.69 16 5 C 0.19 3.45 6.68 -39.26 -0.26 3.19 16 6 O -0.31 -5.09 10.49 -19.42 -0.20 -5.29 16 7 C 0.03 0.32 9.81 101.05 0.99 1.31 16 8 C -0.26 -5.29 6.99 -39.26 -0.27 -5.57 16 9 C 0.23 4.71 5.94 -39.25 -0.23 4.48 16 10 O -0.29 -6.70 9.73 -19.39 -0.19 -6.89 16 11 C 0.17 3.95 1.80 -27.88 -0.05 3.90 16 12 H 0.06 1.33 2.38 -51.93 -0.12 1.21 16 13 C -0.52 -13.89 9.24 -34.44 -0.32 -14.21 16 14 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 15 C 0.09 2.35 5.47 -17.82 -0.10 2.25 16 16 N -0.87 -24.51 13.96 55.43 0.77 -23.73 16 17 Si 0.86 19.71 27.26 -169.99 -4.63 15.08 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 20 H -0.25 -5.58 6.43 56.52 0.36 -5.21 16 21 C -0.04 -0.80 6.32 37.16 0.23 -0.56 16 22 Cl -0.23 -4.36 25.62 -51.86 -1.33 -5.68 16 23 C -0.23 -4.31 9.92 -39.26 -0.39 -4.70 16 24 H 0.10 0.68 8.14 -51.94 -0.42 0.26 16 25 H 0.05 0.46 7.66 -51.92 -0.40 0.06 16 26 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 27 H 0.13 1.56 4.52 -52.49 -0.24 1.32 16 28 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 30 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 31 H 0.14 3.00 5.13 -52.49 -0.27 2.73 16 32 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 34 H 0.10 1.94 8.14 -51.93 -0.42 1.51 16 35 H 0.14 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 304.54 15.07 4.59 4.59 Total: -1.00 -29.52 304.54 -5.11 -34.63 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -3.93 Total: 3.46 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 0.02 Total: -11.39 kcal Atomic # 7 Polarization: -24.51 SS G_CDS: 0.77 Total: -23.73 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.60 Total: -16.95 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.63 Total: 15.08 kcal Atomic # 17 Polarization: -4.36 SS G_CDS: -1.33 Total: -5.68 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.52 -5.11 -34.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225306265.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.243 kcal (2) G-P(sol) polarization free energy of solvation -29.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds