Wall clock time and date at job start Tue Mar 31 2020 05:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35893 * 117.00431 * 2 1 4 4 C 1.38679 * 119.99749 * 359.97438 * 3 2 1 5 5 C 1.38676 * 119.99525 * 180.02562 * 4 3 2 6 6 O 1.35898 * 119.99836 * 179.97438 * 5 4 3 7 7 C 1.42909 * 116.99689 * 0.02562 * 6 5 4 8 8 C 1.38667 * 120.00452 * 359.97438 * 5 4 3 9 9 C 1.38679 * 120.00022 * 0.02562 * 8 5 4 10 10 O 1.35890 * 120.00300 * 179.97438 * 9 8 5 11 11 C 1.42899 * 117.00011 * 356.04657 * 10 9 8 12 12 H 1.08997 * 109.47310 * 27.13676 * 11 10 9 13 13 C 1.50703 * 109.47527 * 147.14160 * 11 10 9 14 14 H 1.07998 * 119.99648 * 34.54877 * 13 11 10 15 15 C 1.37878 * 120.00160 * 214.55612 * 13 11 10 16 16 N 1.31509 * 119.99827 * 184.22059 * 15 13 11 17 17 Si 1.86796 * 119.99759 * 4.21330 * 15 13 11 18 18 H 1.48500 * 109.47433 * 94.09665 * 17 15 13 19 19 H 1.48503 * 109.47235 * 214.09404 * 17 15 13 20 20 H 1.48498 * 109.47628 * 334.09599 * 17 15 13 21 21 C 1.53003 * 109.46946 * 267.13822 * 11 10 9 22 22 Cl 1.80301 * 109.46953 * 64.88449 * 21 11 10 23 23 C 1.38673 * 119.99760 * 180.27299 * 3 2 1 24 24 H 1.08989 * 109.47742 * 180.02562 * 1 2 3 25 25 H 1.09010 * 109.47121 * 300.00458 * 1 2 3 26 26 H 1.09005 * 109.47035 * 59.99446 * 1 2 3 27 27 H 1.07999 * 119.99953 * 359.97438 * 4 3 2 28 28 H 1.09002 * 109.46775 * 179.97438 * 7 6 5 29 29 H 1.08997 * 109.47039 * 299.99430 * 7 6 5 30 30 H 1.08999 * 109.46962 * 59.99740 * 7 6 5 31 31 H 1.07995 * 120.00474 * 179.97438 * 8 5 4 32 32 H 0.97005 * 119.99936 * 179.97438 * 16 15 13 33 33 H 1.09001 * 109.46978 * 304.88604 * 21 11 10 34 34 H 1.08999 * 109.47145 * 184.88178 * 21 11 10 35 35 H 1.08001 * 120.00417 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2908 2.3739 -0.0005 5 6 1.9205 3.6094 -0.0011 6 8 1.1804 4.7492 -0.0021 7 6 -0.2408 4.5999 -0.0021 8 6 3.3053 3.6819 -0.0005 9 6 4.0605 2.5188 0.0000 10 8 5.4176 2.5898 0.0000 11 6 5.9991 3.8922 -0.0884 12 1 5.3099 4.6268 0.3280 13 6 7.2909 3.9193 0.6872 14 1 7.9193 3.0415 0.7204 15 6 7.6705 5.0645 1.3545 16 7 8.8359 5.1160 1.9619 17 14 6.5297 6.5430 1.3957 18 1 5.7062 6.4987 2.6306 19 1 7.3353 7.7905 1.3826 20 1 5.6405 6.5156 0.2066 21 6 6.2776 4.2279 -1.5549 22 17 4.7181 4.3366 -2.4532 23 6 3.4309 1.2832 -0.0057 24 1 -0.3634 -1.0275 0.0005 25 1 -0.3634 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.2123 2.3174 -0.0014 28 1 -0.7095 5.5840 -0.0025 29 1 -0.5484 4.0502 -0.8916 30 1 -0.5485 4.0516 0.8884 31 1 3.7957 4.6441 -0.0014 32 1 9.1031 5.9218 2.4310 33 1 6.8968 3.4463 -1.9952 34 1 6.7995 5.1828 -1.6162 35 1 4.0190 0.3774 -0.0098 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225306265.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:41 Heat of formation + Delta-G solvation = -112.205073 kcal Electronic energy + Delta-G solvation = -20886.369639 eV Core-core repulsion = 17490.131026 eV Total energy + Delta-G solvation = -3396.238614 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.080 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.69761 -40.13711 -39.77548 -37.02503 -36.47656 -35.12719 -32.50119 -31.23830 -30.29300 -28.64698 -27.49582 -27.27043 -24.21479 -23.25872 -21.88835 -20.26496 -19.26023 -18.11996 -17.66146 -17.08069 -17.02291 -16.96261 -16.49879 -16.37560 -15.87360 -15.63207 -15.24454 -14.87006 -14.74145 -14.37157 -13.67319 -13.54535 -13.33245 -13.19273 -12.94269 -12.91345 -12.51639 -12.40075 -12.27196 -12.13013 -11.88965 -11.62552 -11.40778 -11.15400 -10.93088 -10.68441 -9.08188 -9.01506 -8.51482 -6.65086 0.44728 0.45931 1.23076 1.31021 1.37922 1.40572 1.97912 2.16329 2.33228 2.69827 2.73731 2.97303 3.91039 3.97292 4.01996 4.13802 4.18016 4.24193 4.35867 4.36118 4.38209 4.41721 4.46266 4.58226 4.71488 4.73940 4.85447 5.05071 5.17595 5.23132 5.31796 5.54482 5.93158 6.20886 6.45718 6.51514 6.69536 7.04243 8.63350 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.018360 B = 0.005894 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.715980 B = 4749.720227 C = 5051.991340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.326 6.326 3 C 0.200 3.800 4 C -0.329 4.329 5 C 0.196 3.804 6 O -0.332 6.332 7 C 0.016 3.984 8 C -0.283 4.283 9 C 0.204 3.796 10 O -0.316 6.316 11 C 0.177 3.823 12 H 0.057 0.943 13 C -0.535 4.535 14 H 0.049 0.951 15 C 0.043 3.957 16 N -0.915 5.915 17 Si 0.917 3.083 18 H -0.265 1.265 19 H -0.264 1.264 20 H -0.239 1.239 21 C -0.036 4.036 22 Cl -0.207 7.207 23 C -0.248 4.248 24 H 0.124 0.876 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.166 0.834 28 H 0.121 0.879 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.123 0.877 32 H 0.279 0.721 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.391 -2.617 -5.089 21.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.239 6.239 3 C 0.154 3.846 4 C -0.348 4.348 5 C 0.150 3.850 6 O -0.246 6.246 7 C -0.078 4.078 8 C -0.303 4.303 9 C 0.157 3.843 10 O -0.229 6.229 11 C 0.122 3.878 12 H 0.075 0.925 13 C -0.572 4.572 14 H 0.067 0.933 15 C -0.159 4.159 16 N -0.551 5.551 17 Si 0.739 3.261 18 H -0.190 1.190 19 H -0.189 1.189 20 H -0.162 1.162 21 C -0.099 4.099 22 Cl -0.181 7.181 23 C -0.268 4.268 24 H 0.142 0.858 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.183 0.817 28 H 0.139 0.861 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.141 0.859 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -20.085 -2.640 -5.043 20.876 hybrid contribution -0.107 0.782 0.212 0.818 sum -20.192 -1.858 -4.831 20.845 Atomic orbital electron populations 1.23435 0.75958 1.05923 1.02502 1.86058 1.23913 1.25914 1.88039 1.18152 0.90490 0.84490 0.91485 1.21208 1.01510 0.90434 1.21689 1.18325 0.89816 0.85472 0.91429 1.86083 1.21394 1.29049 1.88052 1.23422 0.76156 1.05678 1.02559 1.20384 0.92502 0.98550 1.18860 1.18504 0.83213 0.92844 0.89788 1.86229 1.16286 1.34079 1.86270 1.20780 0.93452 0.81276 0.92285 0.92527 1.20769 1.03633 1.00342 1.32463 0.93298 1.25671 0.96284 1.01062 0.92923 1.69948 1.21316 1.30346 1.33502 0.86164 0.79900 0.79241 0.80842 1.19023 1.18851 1.16191 1.25597 0.85605 1.05231 0.93442 1.98675 1.40701 1.99066 1.79638 1.19414 0.92364 0.96245 1.18768 0.85766 0.91456 0.91451 0.81654 0.86114 0.91358 0.91271 0.85939 0.91153 0.88304 0.87591 0.84970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -8.56 10.49 -92.35 -0.97 -9.53 16 3 C 0.20 6.26 6.68 22.48 0.15 6.41 16 4 C -0.33 -9.19 8.02 22.48 0.18 -9.01 16 5 C 0.20 6.54 6.68 22.48 0.15 6.69 16 6 O -0.33 -9.80 10.49 -92.40 -0.97 -10.77 16 7 C 0.02 0.27 9.81 113.37 1.11 1.38 16 8 C -0.28 -11.30 6.99 22.48 0.16 -11.14 16 9 C 0.20 8.56 5.94 22.48 0.13 8.69 16 10 O -0.32 -15.02 9.73 -92.31 -0.90 -15.92 16 11 C 0.18 8.42 1.80 29.85 0.05 8.47 16 12 H 0.06 2.69 2.38 -2.39 -0.01 2.68 16 13 C -0.53 -29.74 9.24 25.60 0.24 -29.50 16 14 H 0.05 3.05 8.06 -2.91 -0.02 3.02 16 15 C 0.04 2.38 5.47 84.66 0.46 2.84 16 16 N -0.91 -53.37 13.96 21.45 0.30 -53.08 16 17 Si 0.92 40.88 27.26 68.60 1.87 42.75 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 20 H -0.24 -9.92 6.43 99.48 0.64 -9.28 16 21 C -0.04 -1.47 6.32 71.98 0.45 -1.02 16 22 Cl -0.21 -7.82 25.62 -2.72 -0.07 -7.89 16 23 C -0.25 -9.32 9.92 22.48 0.22 -9.09 16 24 H 0.12 1.18 8.14 -2.39 -0.02 1.17 16 25 H 0.07 0.83 7.66 -2.38 -0.02 0.82 16 26 H 0.07 0.83 7.66 -2.38 -0.02 0.81 16 27 H 0.17 3.21 4.52 -2.91 -0.01 3.19 16 28 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.07 0.96 7.66 -2.39 -0.02 0.94 16 30 H 0.07 0.96 7.66 -2.39 -0.02 0.94 16 31 H 0.12 5.23 5.13 -2.91 -0.01 5.22 16 32 H 0.28 14.98 8.31 -92.70 -0.77 14.21 16 33 H 0.10 3.94 8.14 -2.39 -0.02 3.92 16 34 H 0.11 4.15 8.14 -2.39 -0.02 4.13 16 35 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -66.58 304.54 4.74 -61.83 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 1.05 Total: 16.54 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: 4.43 Total: -23.93 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 0.30 Total: -53.08 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -2.84 Total: -36.22 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 1.87 Total: 42.75 kcal Atomic # 17 Polarization: -7.82 SS G_CDS: -0.07 Total: -7.89 kcal Total: -66.58 4.74 -61.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225306265.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.372 kcal (2) G-P(sol) polarization free energy of solvation -66.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds