Wall clock time and date at job start Tue Mar 31 2020 05:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36074 * 117.00295 * 2 1 4 4 C 1.38538 * 120.01492 * 0.02562 * 3 2 1 5 5 C 1.38229 * 120.05070 * 179.97438 * 4 3 2 6 6 C 1.38695 * 120.09176 * 0.02562 * 5 4 3 7 7 O 1.35973 * 119.98196 * 179.97438 * 6 5 4 8 8 C 1.42899 * 117.00284 * 0.19411 * 7 6 5 9 9 H 1.08995 * 109.46918 * 23.85735 * 8 7 6 10 10 C 1.50693 * 109.47090 * 143.85999 * 8 7 6 11 11 H 1.08004 * 120.00323 * 25.53905 * 10 8 7 12 12 C 1.37881 * 119.99915 * 205.53419 * 10 8 7 13 13 N 1.31513 * 120.00389 * 185.07563 * 12 10 8 14 14 Si 1.86798 * 119.99777 * 5.07507 * 12 10 8 15 15 H 1.48496 * 109.47350 * 94.53179 * 14 12 10 16 16 H 1.48505 * 109.46955 * 214.53312 * 14 12 10 17 17 H 1.48497 * 109.47076 * 334.52551 * 14 12 10 18 18 C 1.52998 * 109.46919 * 263.85938 * 8 7 6 19 19 Cl 1.80303 * 109.47284 * 63.49206 * 18 8 7 20 20 C 1.38673 * 120.03249 * 359.72584 * 6 5 4 21 21 C 1.38538 * 119.94856 * 0.54867 * 20 6 5 22 22 O 1.35989 * 120.04681 * 179.72800 * 21 20 6 23 23 C 1.42900 * 116.99787 * 359.72225 * 22 21 20 24 24 H 1.08993 * 109.47209 * 60.00168 * 1 2 3 25 25 H 1.09003 * 109.47089 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46956 * 299.99892 * 1 2 3 27 27 H 1.07997 * 119.97173 * 0.02562 * 4 3 2 28 28 H 1.08000 * 119.95073 * 179.97438 * 5 4 3 29 29 H 0.96997 * 120.00370 * 179.97438 * 13 12 10 30 30 H 1.09001 * 109.47012 * 183.49159 * 18 8 7 31 31 H 1.08999 * 109.47274 * 303.49063 * 18 8 7 32 32 H 1.07998 * 120.02455 * 180.27356 * 20 6 5 33 33 H 1.09002 * 109.47045 * 180.02562 * 23 22 21 34 34 H 1.08998 * 109.46920 * 60.00065 * 23 22 21 35 35 H 1.08998 * 109.47282 * 300.00599 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2124 0.0000 4 6 1.2927 2.3745 0.0005 5 6 1.9195 3.6065 0.0011 6 6 3.3044 3.6821 0.0005 7 8 3.9187 4.8952 0.0005 8 6 3.0759 6.0492 0.0054 9 1 2.1041 5.7876 0.4239 10 6 3.7092 7.1300 0.8430 11 1 4.7803 7.1494 0.9800 12 6 2.9211 8.0945 1.4346 13 7 3.4794 9.0938 2.0820 14 14 1.0602 7.9815 1.3165 15 1 0.5282 7.2978 2.5226 16 1 0.4860 9.3482 1.2284 17 1 0.6872 7.2090 0.1044 18 6 2.8949 6.5545 -1.4273 19 17 2.0446 5.3000 -2.4042 20 6 4.0629 2.5212 0.0052 21 6 3.4362 1.2856 -0.0011 22 8 4.1781 0.1459 -0.0021 23 6 5.5991 0.2968 -0.0026 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2142 2.3178 0.0014 28 1 1.3300 4.5114 0.0011 29 1 2.9250 9.7725 2.4978 30 1 2.3035 7.4700 -1.4177 31 1 3.8714 6.7574 -1.8672 32 1 5.1412 2.5802 0.0093 33 1 6.0689 -0.6867 -0.0039 34 1 5.9065 0.8456 0.8875 35 1 5.9058 0.8468 -0.8923 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225310314.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:53 Heat of formation + Delta-G solvation = -90.410133 kcal Electronic energy + Delta-G solvation = -20812.790342 eV Core-core repulsion = 17417.496828 eV Total energy + Delta-G solvation = -3395.293514 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.080 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.35499 -38.63441 -38.19056 -35.67152 -35.04388 -33.24162 -30.84427 -29.95523 -29.01159 -27.10881 -26.65138 -25.34995 -22.79608 -21.78304 -20.43216 -18.66051 -17.48609 -17.12699 -16.49052 -15.97225 -15.85941 -15.07837 -15.02920 -14.60300 -14.36982 -14.23495 -13.71327 -13.25481 -12.98468 -12.87718 -12.44056 -12.31682 -12.18018 -11.65068 -11.59680 -11.23571 -11.11953 -11.03386 -10.96065 -10.72035 -10.42305 -10.09115 -9.79173 -9.46876 -9.23473 -8.91152 -8.26921 -7.04574 -6.49022 -4.55421 1.61800 1.91304 2.93133 3.04715 3.09208 3.13771 3.42844 3.52183 4.03307 4.05778 4.10444 4.83588 5.02914 5.15532 5.22264 5.24492 5.30296 5.40286 5.50258 5.54570 5.61794 5.69408 5.74243 5.79130 5.91875 6.00906 6.18544 6.48299 6.65065 6.73105 6.90428 7.14336 7.26239 7.76746 7.90847 8.33550 8.65230 9.07315 10.61771 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.018592 B = 0.005594 C = 0.005255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.694300 B = 5003.892641 C = 5327.360458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.313 6.313 3 C 0.042 3.958 4 C -0.130 4.130 5 C -0.197 4.197 6 C 0.164 3.836 7 O -0.298 6.298 8 C 0.178 3.822 9 H 0.051 0.949 10 C -0.526 4.526 11 H 0.091 0.909 12 C 0.086 3.914 13 N -0.871 5.871 14 Si 0.858 3.142 15 H -0.267 1.267 16 H -0.276 1.276 17 H -0.255 1.255 18 C -0.039 4.039 19 Cl -0.228 7.228 20 C -0.218 4.218 21 C 0.133 3.867 22 O -0.308 6.308 23 C 0.026 3.974 24 H 0.050 0.950 25 H 0.093 0.907 26 H 0.050 0.950 27 H 0.130 0.870 28 H 0.136 0.864 29 H 0.273 0.727 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.139 0.861 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.612 -12.925 -4.640 14.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C -0.003 4.003 4 C -0.149 4.149 5 C -0.216 4.216 6 C 0.116 3.884 7 O -0.210 6.210 8 C 0.122 3.878 9 H 0.068 0.932 10 C -0.563 4.563 11 H 0.109 0.891 12 C -0.120 4.120 13 N -0.506 5.506 14 Si 0.682 3.318 15 H -0.192 1.192 16 H -0.201 1.201 17 H -0.179 1.179 18 C -0.102 4.102 19 Cl -0.202 7.202 20 C -0.238 4.238 21 C 0.087 3.913 22 O -0.221 6.221 23 C -0.069 4.069 24 H 0.068 0.932 25 H 0.112 0.888 26 H 0.069 0.931 27 H 0.148 0.852 28 H 0.153 0.847 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.157 0.843 33 H 0.114 0.886 34 H 0.074 0.926 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.461 -13.140 -4.597 14.345 hybrid contribution -1.264 0.608 -0.070 1.404 sum -4.725 -12.532 -4.667 14.183 Atomic orbital electron populations 1.22943 0.79539 1.03167 1.00952 1.86110 1.20157 1.26155 1.90313 1.17930 0.88872 0.84881 1.08579 1.20738 0.99350 0.90966 1.03865 1.21143 0.94083 0.98263 1.08122 1.18688 0.90559 0.86402 0.92719 1.86218 1.36898 1.11480 1.86432 1.20847 0.92569 0.83131 0.91235 0.93154 1.20721 0.97047 1.08134 1.30380 0.89086 1.24900 0.98732 0.94587 0.93798 1.69835 1.36318 1.11391 1.33032 0.87131 0.85676 0.78821 0.80126 1.19195 1.20090 1.17929 1.26035 0.98777 0.91826 0.93595 1.98673 1.82283 1.62291 1.76921 1.20157 1.00360 0.88956 1.14293 1.17770 0.87868 0.85178 1.00458 1.86132 1.18560 1.28293 1.89160 1.23039 0.78925 1.03329 1.01634 0.93156 0.88836 0.93113 0.85228 0.84693 0.91624 0.88637 0.88672 0.84321 0.88619 0.92551 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.32 16 2 O -0.31 -4.92 10.28 -34.56 -0.36 -5.27 16 3 C 0.04 0.71 6.70 -39.14 -0.26 0.45 16 4 C -0.13 -2.16 9.03 -39.47 -0.36 -2.51 16 5 C -0.20 -3.70 7.18 -39.42 -0.28 -3.99 16 6 C 0.16 3.26 6.04 -39.25 -0.24 3.03 16 7 O -0.30 -6.61 9.69 -19.65 -0.19 -6.80 16 8 C 0.18 4.00 1.70 -27.89 -0.05 3.95 16 9 H 0.05 1.13 2.91 -51.93 -0.15 0.98 16 10 C -0.53 -13.73 9.23 -34.44 -0.32 -14.05 16 11 H 0.09 2.63 8.06 -52.48 -0.42 2.20 16 12 C 0.09 2.26 5.47 -17.82 -0.10 2.16 16 13 N -0.87 -24.28 13.96 55.43 0.77 -23.50 16 14 Si 0.86 19.01 26.37 -169.99 -4.48 14.53 16 15 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 16 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 17 H -0.26 -5.29 5.97 56.52 0.34 -4.95 16 18 C -0.04 -0.79 5.95 37.16 0.22 -0.57 16 19 Cl -0.23 -4.23 25.78 -51.86 -1.34 -5.57 16 20 C -0.22 -3.90 8.97 -39.31 -0.35 -4.25 16 21 C 0.13 2.31 6.70 -39.14 -0.26 2.04 16 22 O -0.31 -4.89 10.28 -34.29 -0.35 -5.24 16 23 C 0.03 0.30 9.81 101.05 0.99 1.29 16 24 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 25 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 27 H 0.13 1.78 6.29 -52.49 -0.33 1.45 16 28 H 0.14 2.61 5.07 -52.49 -0.27 2.34 16 29 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.10 1.87 6.91 -51.93 -0.36 1.51 16 31 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 32 H 0.14 2.22 6.30 -52.49 -0.33 1.89 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.61 7.65 -51.93 -0.40 0.21 16 35 H 0.05 0.59 7.67 -51.93 -0.40 0.20 16 LS Contribution 302.07 15.07 4.55 4.55 Total: -1.00 -29.28 302.07 -5.32 -34.61 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -3.92 Total: 3.84 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -0.01 Total: -11.14 kcal Atomic # 7 Polarization: -24.28 SS G_CDS: 0.77 Total: -23.50 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.90 Total: -17.31 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.48 Total: 14.53 kcal Atomic # 17 Polarization: -4.23 SS G_CDS: -1.34 Total: -5.57 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.28 -5.32 -34.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225310314.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.804 kcal (2) G-P(sol) polarization free energy of solvation -29.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds