Wall clock time and date at job start Tue Mar 31 2020 05:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36074 * 117.00295 * 2 1 4 4 C 1.38538 * 120.01492 * 0.02562 * 3 2 1 5 5 C 1.38229 * 120.05070 * 179.97438 * 4 3 2 6 6 C 1.38695 * 120.09176 * 0.02562 * 5 4 3 7 7 O 1.35973 * 119.98196 * 179.97438 * 6 5 4 8 8 C 1.42899 * 117.00284 * 0.19411 * 7 6 5 9 9 H 1.08995 * 109.46918 * 23.85735 * 8 7 6 10 10 C 1.50693 * 109.47090 * 143.85999 * 8 7 6 11 11 H 1.08004 * 120.00323 * 25.53905 * 10 8 7 12 12 C 1.37881 * 119.99915 * 205.53419 * 10 8 7 13 13 N 1.31513 * 120.00389 * 185.07563 * 12 10 8 14 14 Si 1.86798 * 119.99777 * 5.07507 * 12 10 8 15 15 H 1.48496 * 109.47350 * 94.53179 * 14 12 10 16 16 H 1.48505 * 109.46955 * 214.53312 * 14 12 10 17 17 H 1.48497 * 109.47076 * 334.52551 * 14 12 10 18 18 C 1.52998 * 109.46919 * 263.85938 * 8 7 6 19 19 Cl 1.80303 * 109.47284 * 63.49206 * 18 8 7 20 20 C 1.38673 * 120.03249 * 359.72584 * 6 5 4 21 21 C 1.38538 * 119.94856 * 0.54867 * 20 6 5 22 22 O 1.35989 * 120.04681 * 179.72800 * 21 20 6 23 23 C 1.42900 * 116.99787 * 359.72225 * 22 21 20 24 24 H 1.08993 * 109.47209 * 60.00168 * 1 2 3 25 25 H 1.09003 * 109.47089 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46956 * 299.99892 * 1 2 3 27 27 H 1.07997 * 119.97173 * 0.02562 * 4 3 2 28 28 H 1.08000 * 119.95073 * 179.97438 * 5 4 3 29 29 H 0.96997 * 120.00370 * 179.97438 * 13 12 10 30 30 H 1.09001 * 109.47012 * 183.49159 * 18 8 7 31 31 H 1.08999 * 109.47274 * 303.49063 * 18 8 7 32 32 H 1.07998 * 120.02455 * 180.27356 * 20 6 5 33 33 H 1.09002 * 109.47045 * 180.02562 * 23 22 21 34 34 H 1.08998 * 109.46920 * 60.00065 * 23 22 21 35 35 H 1.08998 * 109.47282 * 300.00599 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2124 0.0000 4 6 1.2927 2.3745 0.0005 5 6 1.9195 3.6065 0.0011 6 6 3.3044 3.6821 0.0005 7 8 3.9187 4.8952 0.0005 8 6 3.0759 6.0492 0.0054 9 1 2.1041 5.7876 0.4239 10 6 3.7092 7.1300 0.8430 11 1 4.7803 7.1494 0.9800 12 6 2.9211 8.0945 1.4346 13 7 3.4794 9.0938 2.0820 14 14 1.0602 7.9815 1.3165 15 1 0.5282 7.2978 2.5226 16 1 0.4860 9.3482 1.2284 17 1 0.6872 7.2090 0.1044 18 6 2.8949 6.5545 -1.4273 19 17 2.0446 5.3000 -2.4042 20 6 4.0629 2.5212 0.0052 21 6 3.4362 1.2856 -0.0011 22 8 4.1781 0.1459 -0.0021 23 6 5.5991 0.2968 -0.0026 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2142 2.3178 0.0014 28 1 1.3300 4.5114 0.0011 29 1 2.9250 9.7725 2.4978 30 1 2.3035 7.4700 -1.4177 31 1 3.8714 6.7574 -1.8672 32 1 5.1412 2.5802 0.0093 33 1 6.0689 -0.6867 -0.0039 34 1 5.9065 0.8456 0.8875 35 1 5.9058 0.8468 -0.8923 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225310314.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:53 Heat of formation + Delta-G solvation = -108.813470 kcal Electronic energy + Delta-G solvation = -20813.588371 eV Core-core repulsion = 17417.496828 eV Total energy + Delta-G solvation = -3396.091543 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.080 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.66826 -40.11772 -39.33732 -37.10768 -36.54733 -35.14230 -32.55079 -31.26166 -30.32524 -28.04135 -27.80063 -27.21382 -24.31540 -23.06029 -21.98205 -20.07946 -19.19150 -18.51866 -17.85569 -17.39151 -17.03596 -16.71230 -16.09965 -16.04058 -15.71292 -15.38657 -15.30262 -14.87465 -14.71599 -14.34903 -13.70609 -13.56062 -13.46630 -13.21974 -12.87888 -12.80954 -12.53155 -12.31684 -12.11904 -12.04210 -11.89099 -11.78485 -11.43980 -11.14178 -10.92227 -10.69652 -9.60685 -8.49414 -8.41921 -6.62378 0.28215 0.52868 1.25142 1.31664 1.38992 1.39880 2.18038 2.24044 2.42207 2.56773 2.73081 2.89479 3.81086 3.90260 4.09763 4.14393 4.22423 4.27038 4.31788 4.41739 4.42729 4.46108 4.52602 4.65376 4.74097 4.77552 4.79898 4.87945 5.16906 5.27065 5.40537 5.55209 5.94117 6.12187 6.46739 6.59622 6.75907 7.06109 8.65784 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.018592 B = 0.005594 C = 0.005255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.694300 B = 5003.892641 C = 5327.360458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.328 6.328 3 C 0.043 3.957 4 C -0.126 4.126 5 C -0.206 4.206 6 C 0.134 3.866 7 O -0.319 6.319 8 C 0.185 3.815 9 H 0.056 0.944 10 C -0.538 4.538 11 H 0.045 0.955 12 C 0.038 3.962 13 N -0.919 5.919 14 Si 0.918 3.082 15 H -0.263 1.263 16 H -0.268 1.268 17 H -0.230 1.230 18 C -0.037 4.037 19 Cl -0.206 7.206 20 C -0.220 4.220 21 C 0.127 3.873 22 O -0.319 6.319 23 C 0.017 3.983 24 H 0.060 0.940 25 H 0.120 0.880 26 H 0.061 0.939 27 H 0.160 0.840 28 H 0.130 0.870 29 H 0.278 0.722 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.148 0.852 33 H 0.126 0.874 34 H 0.059 0.941 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.777 -14.862 -5.519 16.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.243 6.243 3 C -0.002 4.002 4 C -0.144 4.144 5 C -0.225 4.225 6 C 0.087 3.913 7 O -0.233 6.233 8 C 0.129 3.871 9 H 0.073 0.927 10 C -0.575 4.575 11 H 0.063 0.937 12 C -0.164 4.164 13 N -0.556 5.556 14 Si 0.739 3.261 15 H -0.188 1.188 16 H -0.193 1.193 17 H -0.153 1.153 18 C -0.100 4.100 19 Cl -0.180 7.180 20 C -0.240 4.240 21 C 0.081 3.919 22 O -0.233 6.233 23 C -0.077 4.077 24 H 0.079 0.921 25 H 0.138 0.862 26 H 0.080 0.920 27 H 0.178 0.822 28 H 0.148 0.852 29 H 0.087 0.913 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.166 0.834 33 H 0.144 0.856 34 H 0.078 0.922 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.620 -15.111 -5.493 17.032 hybrid contribution -0.512 0.987 0.194 1.129 sum -6.132 -14.124 -5.299 16.284 Atomic orbital electron populations 1.23307 0.76999 1.05388 1.01944 1.86104 1.22805 1.25393 1.89982 1.18143 0.89097 0.85672 1.07328 1.20989 1.00841 0.89874 1.02721 1.21149 0.93500 0.98964 1.08886 1.18934 0.91495 0.85803 0.95031 1.86147 1.37416 1.12276 1.87450 1.20618 0.92164 0.82383 0.91953 0.92677 1.20820 0.95191 1.09814 1.31697 0.93714 1.25704 1.03823 0.93791 0.93075 1.69963 1.38468 1.12580 1.34606 0.86164 0.79253 0.79495 0.81167 1.18830 1.19314 1.15302 1.25675 0.99457 0.92161 0.92679 1.98669 1.81747 1.61548 1.76069 1.20282 1.00952 0.88749 1.13985 1.17940 0.88587 0.85328 1.00056 1.86124 1.20587 1.27751 1.88870 1.23354 0.76848 1.05473 1.02054 0.92100 0.86208 0.92045 0.82237 0.85209 0.91283 0.87896 0.88552 0.83395 0.85576 0.92246 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.33 -9.43 10.28 -80.44 -0.83 -10.26 16 3 C 0.04 1.36 6.70 22.56 0.15 1.51 16 4 C -0.13 -3.85 9.03 22.34 0.20 -3.64 16 5 C -0.21 -7.42 7.18 22.38 0.16 -7.26 16 6 C 0.13 5.27 6.04 22.48 0.14 5.41 16 7 O -0.32 -14.38 9.69 -93.24 -0.90 -15.28 16 8 C 0.18 8.32 1.70 29.84 0.05 8.37 16 9 H 0.06 2.43 2.91 -2.39 -0.01 2.42 16 10 C -0.54 -29.08 9.23 25.60 0.24 -28.84 16 11 H 0.04 2.75 8.06 -2.91 -0.02 2.73 16 12 C 0.04 2.03 5.47 84.66 0.46 2.49 16 13 N -0.92 -52.83 13.96 21.45 0.30 -52.53 16 14 Si 0.92 38.62 26.37 68.60 1.81 40.43 16 15 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 16 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 17 H -0.23 -8.66 5.97 99.48 0.59 -8.07 16 18 C -0.04 -1.44 5.95 71.98 0.43 -1.01 16 19 Cl -0.21 -7.27 25.78 -2.72 -0.07 -7.34 16 20 C -0.22 -7.75 8.97 22.45 0.20 -7.54 16 21 C 0.13 4.23 6.70 22.56 0.15 4.38 16 22 O -0.32 -9.62 10.28 -79.48 -0.82 -10.44 16 23 C 0.02 0.36 9.81 113.37 1.11 1.47 16 24 H 0.06 1.00 7.66 -2.39 -0.02 0.98 16 25 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.06 1.01 7.66 -2.39 -0.02 0.99 16 27 H 0.16 3.78 6.29 -2.91 -0.02 3.77 16 28 H 0.13 4.75 5.07 -2.91 -0.01 4.74 16 29 H 0.28 14.70 8.31 -92.71 -0.77 13.93 16 30 H 0.10 3.87 6.91 -2.39 -0.02 3.85 16 31 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 32 H 0.15 4.72 6.30 -2.91 -0.02 4.70 16 33 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.06 1.22 7.65 -2.39 -0.02 1.20 16 35 H 0.06 1.22 7.67 -2.39 -0.02 1.20 16 Total: -1.00 -64.46 302.07 4.90 -59.56 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 1.01 Total: 19.09 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: 4.41 Total: -23.22 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: 0.30 Total: -52.53 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -2.55 Total: -35.97 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 1.81 Total: 40.43 kcal Atomic # 17 Polarization: -7.27 SS G_CDS: -0.07 Total: -7.34 kcal Total: -64.46 4.90 -59.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225310314.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.258 kcal (2) G-P(sol) polarization free energy of solvation -64.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds