Wall clock time and date at job start Tue Mar 31 2020 06:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99665 * 2 1 4 4 H 1.48506 * 109.46980 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46977 * 300.00034 * 3 2 1 6 6 H 1.48500 * 109.47268 * 60.00147 * 3 2 1 7 7 C 1.37874 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00367 * 175.64117 * 7 2 1 9 9 C 1.50700 * 120.00130 * 355.64644 * 7 2 1 10 10 H 1.09003 * 109.47439 * 185.99505 * 9 7 2 11 11 O 1.42903 * 109.47016 * 305.99322 * 9 7 2 12 12 C 1.35895 * 116.99936 * 277.77795 * 11 9 7 13 13 C 1.38671 * 120.00217 * 186.80037 * 12 11 9 14 14 C 1.38674 * 120.00388 * 179.80861 * 13 12 11 15 15 O 1.35891 * 120.00377 * 180.20969 * 14 13 12 16 16 C 1.38673 * 119.99810 * 0.41379 * 14 13 12 17 17 C 1.38682 * 120.00036 * 359.81741 * 16 14 13 18 18 O 1.35897 * 120.00100 * 179.97438 * 17 16 14 19 19 C 1.38676 * 119.99839 * 7.06868 * 12 11 9 20 20 C 1.50701 * 109.47512 * 65.98857 * 9 7 2 21 21 C 1.38236 * 119.99659 * 88.07105 * 20 9 7 22 22 C 1.38240 * 119.99849 * 179.97438 * 21 20 9 23 23 C 1.38233 * 120.00091 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99706 * 0.02562 * 23 22 21 25 25 C 1.38229 * 120.00106 * 268.05426 * 20 9 7 26 26 H 0.96998 * 120.00150 * 0.02562 * 1 2 3 27 27 H 1.08008 * 119.99918 * 359.97438 * 13 12 11 28 28 H 0.96699 * 114.00269 * 270.20139 * 15 14 13 29 29 H 1.08000 * 120.00428 * 179.78905 * 16 14 13 30 30 H 0.96699 * 113.99453 * 270.01670 * 18 17 16 31 31 H 1.08001 * 120.00418 * 359.97438 * 19 12 11 32 32 H 1.08005 * 120.00099 * 359.97438 * 21 20 9 33 33 H 1.08000 * 119.99555 * 180.02562 * 22 21 20 34 34 H 1.08003 * 120.00096 * 179.71966 * 23 22 21 35 35 H 1.08007 * 119.99867 * 179.97438 * 24 23 22 36 36 H 1.08002 * 120.00538 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0822 -1.1954 -0.0705 9 6 1.2544 -2.4972 0.1002 10 1 1.9645 -3.3191 0.1927 11 8 0.4042 -2.4708 1.2485 12 6 0.9750 -2.7670 2.4457 13 6 0.1843 -2.8985 3.5772 14 6 0.7663 -3.2046 4.7981 15 8 -0.0091 -3.3376 5.9062 16 6 2.1400 -3.3708 4.8892 17 6 2.9314 -3.2345 3.7585 18 8 4.2777 -3.3969 3.8477 19 6 2.3489 -2.9322 2.5368 20 6 0.4190 -2.6921 -1.1388 21 6 0.9625 -3.3123 -2.2483 22 6 0.1960 -3.4915 -3.3847 23 6 -1.1140 -3.0511 -3.4115 24 6 -1.6574 -2.4309 -2.3020 25 6 -0.8907 -2.2510 -1.1658 26 1 -0.4850 0.8400 -0.0004 27 1 -0.8852 -2.7651 3.5072 28 1 -0.1403 -2.5141 6.3956 29 1 2.5937 -3.6058 5.8406 30 1 4.7600 -2.5817 4.0426 31 1 2.9652 -2.8259 1.6563 32 1 1.9859 -3.6568 -2.2273 33 1 0.6206 -3.9764 -4.2514 34 1 -1.7114 -3.1870 -4.3009 35 1 -2.6808 -2.0864 -2.3230 36 1 -1.3156 -1.7671 -0.2987 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225365587.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:38 Heat of formation + Delta-G solvation = -67.687400 kcal Electronic energy + Delta-G solvation = -22224.795275 eV Core-core repulsion = 18832.919941 eV Total energy + Delta-G solvation = -3391.875333 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.78468 -38.51124 -37.47199 -37.29852 -34.55892 -32.92849 -30.80356 -29.87122 -28.95384 -28.68327 -26.95599 -23.52466 -22.16211 -21.89900 -21.35728 -20.16859 -18.77852 -17.00101 -16.80901 -16.33904 -15.96748 -15.48598 -15.31568 -15.12622 -14.55958 -14.15273 -13.76550 -13.69287 -13.53508 -12.89953 -12.46045 -12.44837 -12.17983 -12.01613 -11.66028 -11.15483 -11.04108 -10.93528 -10.59292 -10.53154 -10.40730 -10.30000 -10.11283 -9.54547 -9.34181 -8.86354 -8.12952 -7.94298 -7.64801 -7.37051 -6.21122 -4.46907 1.65571 1.92853 2.32844 2.45706 3.13555 3.22888 3.24990 3.89168 4.17728 4.24811 4.60879 4.81977 4.87169 5.06879 5.54499 5.70772 5.71916 5.80736 5.81085 5.90875 6.05132 6.17358 6.27185 6.38338 6.55003 6.68589 6.77529 6.81494 6.88639 6.94178 7.09736 7.17989 7.36874 7.50866 7.61628 7.75767 7.83330 7.84634 8.01796 8.06489 8.38350 8.74574 9.27737 10.72223 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.014135 B = 0.006162 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.395133 B = 4543.250727 C = 5263.536212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.087 3.913 3 Si 0.893 3.107 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.553 4.553 8 H 0.068 0.932 9 C 0.240 3.760 10 H 0.036 0.964 11 O -0.285 6.285 12 C 0.206 3.794 13 C -0.208 4.208 14 C 0.148 3.852 15 O -0.500 6.500 16 C -0.234 4.234 17 C 0.149 3.851 18 O -0.501 6.501 19 C -0.233 4.233 20 C -0.036 4.036 21 C -0.125 4.125 22 C -0.141 4.141 23 C -0.145 4.145 24 C -0.144 4.144 25 C -0.051 4.051 26 H 0.265 0.735 27 H 0.130 0.870 28 H 0.387 0.613 29 H 0.123 0.877 30 H 0.388 0.612 31 H 0.145 0.855 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.920 -2.657 3.871 4.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.121 4.121 3 Si 0.720 3.280 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.590 4.590 8 H 0.086 0.914 9 C 0.186 3.814 10 H 0.054 0.946 11 O -0.196 6.196 12 C 0.157 3.843 13 C -0.227 4.227 14 C 0.103 3.897 15 O -0.310 6.310 16 C -0.254 4.254 17 C 0.104 3.896 18 O -0.311 6.311 19 C -0.252 4.252 20 C -0.036 4.036 21 C -0.143 4.143 22 C -0.159 4.159 23 C -0.163 4.163 24 C -0.162 4.162 25 C -0.070 4.070 26 H 0.075 0.925 27 H 0.148 0.852 28 H 0.242 0.758 29 H 0.141 0.859 30 H 0.243 0.757 31 H 0.163 0.837 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.391 -3.663 3.495 5.078 hybrid contribution 0.850 2.152 0.046 2.314 sum 1.241 -1.511 3.541 4.045 Atomic orbital electron populations 1.69934 1.05906 1.26803 1.45006 1.24983 0.94821 0.99355 0.92963 0.86527 0.80344 0.83301 0.77875 1.19490 1.20699 1.20636 1.21346 0.93377 0.89972 1.54267 0.91354 1.18974 0.86867 0.96242 0.79337 0.94629 1.86236 1.39970 1.80703 1.12736 1.18561 0.90239 0.88339 0.87191 1.20587 1.00688 1.10455 0.90993 1.17727 0.88204 0.97898 0.85831 1.84776 1.70757 1.36901 1.38524 1.21220 0.93154 1.12094 0.98906 1.17956 0.82767 0.97056 0.91778 1.84758 1.15727 1.36886 1.93771 1.21721 0.95362 1.08964 0.99169 1.19831 0.94005 0.94366 0.95421 1.20722 0.99087 1.00890 0.93580 1.20754 0.94713 1.02839 0.97636 1.20844 0.95675 1.01759 0.98046 1.21106 0.99445 1.01198 0.94497 1.21319 0.93301 0.93946 0.98388 0.92492 0.85176 0.75754 0.85912 0.75655 0.83745 0.87382 0.87620 0.87914 0.87702 0.83663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.62 9.34 55.43 0.52 -21.11 16 2 C 0.09 2.20 5.25 -17.82 -0.09 2.11 16 3 Si 0.89 19.87 29.54 -169.99 -5.02 14.84 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.55 -13.77 7.58 -34.44 -0.26 -14.03 16 8 H 0.07 1.69 7.82 -52.49 -0.41 1.28 16 9 C 0.24 5.61 2.09 -29.03 -0.06 5.55 16 10 H 0.04 0.80 6.53 -51.93 -0.34 0.46 16 11 O -0.29 -6.73 7.89 -19.41 -0.15 -6.89 16 12 C 0.21 4.40 6.57 -39.26 -0.26 4.14 16 13 C -0.21 -3.98 9.92 -39.26 -0.39 -4.37 16 14 C 0.15 2.52 6.70 -39.26 -0.26 2.25 16 15 O -0.50 -7.21 13.50 -19.40 -0.26 -7.47 16 16 C -0.23 -3.90 9.92 -39.26 -0.39 -4.29 16 17 C 0.15 2.63 6.70 -39.26 -0.26 2.37 16 18 O -0.50 -7.73 13.50 -19.42 -0.26 -7.99 16 19 C -0.23 -4.66 8.57 -39.26 -0.34 -5.00 16 20 C -0.04 -0.82 4.79 -104.63 -0.50 -1.32 16 21 C -0.12 -2.55 9.71 -39.58 -0.38 -2.94 16 22 C -0.14 -2.61 10.05 -39.58 -0.40 -3.00 16 23 C -0.15 -2.65 10.05 -39.58 -0.40 -3.05 16 24 C -0.14 -2.86 10.05 -39.58 -0.40 -3.26 16 25 C -0.05 -1.16 7.69 -39.58 -0.30 -1.46 16 26 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 27 H 0.13 2.40 8.06 -52.48 -0.42 1.98 16 28 H 0.39 3.59 9.06 45.56 0.41 4.00 16 29 H 0.12 1.80 8.06 -52.49 -0.42 1.37 16 30 H 0.39 4.08 9.06 45.56 0.41 4.49 16 31 H 0.14 3.00 5.60 -52.49 -0.29 2.70 16 32 H 0.11 2.03 8.06 -52.48 -0.42 1.60 16 33 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.10 1.57 8.06 -52.48 -0.42 1.15 16 35 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 36 H 0.15 3.54 6.06 -52.49 -0.32 3.22 16 LS Contribution 311.52 15.07 4.69 4.69 Total: -1.00 -29.05 311.52 -7.39 -36.44 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -2.21 Total: 13.78 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: -4.70 Total: -26.30 kcal Atomic # 7 Polarization: -21.62 SS G_CDS: 0.52 Total: -21.11 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.68 Total: -22.35 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.05 -7.39 -36.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225365587.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.248 kcal (2) G-P(sol) polarization free energy of solvation -29.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds