Wall clock time and date at job start Tue Mar 31 2020 06:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99665 * 2 1 4 4 H 1.48506 * 109.46980 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46977 * 300.00034 * 3 2 1 6 6 H 1.48500 * 109.47268 * 60.00147 * 3 2 1 7 7 C 1.37874 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00367 * 175.64117 * 7 2 1 9 9 C 1.50700 * 120.00130 * 355.64644 * 7 2 1 10 10 H 1.09003 * 109.47439 * 185.99505 * 9 7 2 11 11 O 1.42903 * 109.47016 * 305.99322 * 9 7 2 12 12 C 1.35895 * 116.99936 * 277.77795 * 11 9 7 13 13 C 1.38671 * 120.00217 * 186.80037 * 12 11 9 14 14 C 1.38674 * 120.00388 * 179.80861 * 13 12 11 15 15 O 1.35891 * 120.00377 * 180.20969 * 14 13 12 16 16 C 1.38673 * 119.99810 * 0.41379 * 14 13 12 17 17 C 1.38682 * 120.00036 * 359.81741 * 16 14 13 18 18 O 1.35897 * 120.00100 * 179.97438 * 17 16 14 19 19 C 1.38676 * 119.99839 * 7.06868 * 12 11 9 20 20 C 1.50701 * 109.47512 * 65.98857 * 9 7 2 21 21 C 1.38236 * 119.99659 * 88.07105 * 20 9 7 22 22 C 1.38240 * 119.99849 * 179.97438 * 21 20 9 23 23 C 1.38233 * 120.00091 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99706 * 0.02562 * 23 22 21 25 25 C 1.38229 * 120.00106 * 268.05426 * 20 9 7 26 26 H 0.96998 * 120.00150 * 0.02562 * 1 2 3 27 27 H 1.08008 * 119.99918 * 359.97438 * 13 12 11 28 28 H 0.96699 * 114.00269 * 270.20139 * 15 14 13 29 29 H 1.08000 * 120.00428 * 179.78905 * 16 14 13 30 30 H 0.96699 * 113.99453 * 270.01670 * 18 17 16 31 31 H 1.08001 * 120.00418 * 359.97438 * 19 12 11 32 32 H 1.08005 * 120.00099 * 359.97438 * 21 20 9 33 33 H 1.08000 * 119.99555 * 180.02562 * 22 21 20 34 34 H 1.08003 * 120.00096 * 179.71966 * 23 22 21 35 35 H 1.08007 * 119.99867 * 179.97438 * 24 23 22 36 36 H 1.08002 * 120.00538 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0822 -1.1954 -0.0705 9 6 1.2544 -2.4972 0.1002 10 1 1.9645 -3.3191 0.1927 11 8 0.4042 -2.4708 1.2485 12 6 0.9750 -2.7670 2.4457 13 6 0.1843 -2.8985 3.5772 14 6 0.7663 -3.2046 4.7981 15 8 -0.0091 -3.3376 5.9062 16 6 2.1400 -3.3708 4.8892 17 6 2.9314 -3.2345 3.7585 18 8 4.2777 -3.3969 3.8477 19 6 2.3489 -2.9322 2.5368 20 6 0.4190 -2.6921 -1.1388 21 6 0.9625 -3.3123 -2.2483 22 6 0.1960 -3.4915 -3.3847 23 6 -1.1140 -3.0511 -3.4115 24 6 -1.6574 -2.4309 -2.3020 25 6 -0.8907 -2.2510 -1.1658 26 1 -0.4850 0.8400 -0.0004 27 1 -0.8852 -2.7651 3.5072 28 1 -0.1403 -2.5141 6.3956 29 1 2.5937 -3.6058 5.8406 30 1 4.7600 -2.5817 4.0426 31 1 2.9652 -2.8259 1.6563 32 1 1.9859 -3.6568 -2.2273 33 1 0.6206 -3.9764 -4.2514 34 1 -1.7114 -3.1870 -4.3009 35 1 -2.6808 -2.0864 -2.3230 36 1 -1.3156 -1.7671 -0.2987 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225365587.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:38 Heat of formation + Delta-G solvation = -87.137554 kcal Electronic energy + Delta-G solvation = -22225.638697 eV Core-core repulsion = 18832.919941 eV Total energy + Delta-G solvation = -3392.718755 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.25647 -40.04569 -38.85861 -38.68964 -35.99015 -34.70044 -32.45866 -31.42603 -30.40159 -30.13862 -28.70102 -25.27108 -23.58223 -23.41619 -22.86065 -21.75616 -20.19866 -18.70354 -18.10554 -17.80355 -17.55312 -16.92258 -16.89734 -16.74090 -16.08065 -15.65116 -15.40176 -15.13778 -15.05486 -14.46868 -14.04940 -13.86023 -13.72117 -13.59656 -13.28228 -12.92171 -12.69078 -12.59818 -12.16180 -12.10632 -11.80747 -11.69560 -11.60262 -11.24682 -11.02687 -10.74144 -9.55090 -9.50301 -9.26544 -8.93456 -8.06813 -6.39388 0.24021 0.49784 0.75684 0.89827 1.35386 1.39402 1.47875 2.35176 2.50872 2.69831 3.11537 3.26139 3.29547 3.57867 4.20579 4.23516 4.28425 4.32356 4.34180 4.45173 4.55589 4.62310 4.70227 4.89056 5.02971 5.10725 5.36922 5.38257 5.43704 5.47114 5.54198 5.59692 5.74761 5.82688 5.90481 5.99227 6.22430 6.44636 6.54929 6.78748 6.87897 7.02110 7.37462 8.83249 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.014135 B = 0.006162 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.395133 B = 4543.250727 C = 5263.536212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.047 3.953 3 Si 0.945 3.055 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.563 4.563 8 H 0.060 0.940 9 C 0.243 3.757 10 H 0.030 0.970 11 O -0.306 6.306 12 C 0.176 3.824 13 C -0.224 4.224 14 C 0.165 3.835 15 O -0.499 6.499 16 C -0.226 4.226 17 C 0.159 3.841 18 O -0.503 6.503 19 C -0.252 4.252 20 C -0.065 4.065 21 C -0.139 4.139 22 C -0.136 4.136 23 C -0.139 4.139 24 C -0.151 4.151 25 C -0.073 4.073 26 H 0.262 0.738 27 H 0.127 0.873 28 H 0.413 0.587 29 H 0.152 0.848 30 H 0.411 0.589 31 H 0.128 0.872 32 H 0.117 0.883 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.124 0.876 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.346 -3.044 4.006 5.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.159 4.159 3 Si 0.770 3.230 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.600 4.600 8 H 0.079 0.921 9 C 0.189 3.811 10 H 0.048 0.952 11 O -0.219 6.219 12 C 0.128 3.872 13 C -0.243 4.243 14 C 0.120 3.880 15 O -0.313 6.313 16 C -0.245 4.245 17 C 0.114 3.886 18 O -0.317 6.317 19 C -0.271 4.271 20 C -0.066 4.066 21 C -0.157 4.157 22 C -0.154 4.154 23 C -0.157 4.157 24 C -0.169 4.169 25 C -0.091 4.091 26 H 0.071 0.929 27 H 0.145 0.855 28 H 0.273 0.727 29 H 0.170 0.830 30 H 0.271 0.729 31 H 0.146 0.854 32 H 0.136 0.864 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.142 0.858 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.832 -4.029 3.660 5.507 hybrid contribution 0.727 2.184 0.102 2.304 sum 1.558 -1.845 3.762 4.471 Atomic orbital electron populations 1.70094 1.06677 1.26878 1.45798 1.25577 0.95527 1.01703 0.93056 0.85720 0.79451 0.80230 0.77552 1.19098 1.20821 1.20567 1.21477 0.93102 0.91087 1.54322 0.92140 1.18878 0.87003 0.95326 0.79909 0.95228 1.86182 1.40365 1.81763 1.13543 1.18900 0.91227 0.90044 0.87074 1.20705 1.00584 1.11545 0.91469 1.17683 0.88574 0.95994 0.85760 1.84716 1.70204 1.38792 1.37544 1.21468 0.92777 1.10697 0.99565 1.17949 0.83828 0.95705 0.91122 1.84698 1.14643 1.38583 1.93741 1.21656 0.94822 1.10774 0.99858 1.19987 0.94479 0.96129 0.95983 1.20976 0.99968 1.00942 0.93782 1.21195 0.94638 1.01709 0.97827 1.21280 0.95932 0.99898 0.98548 1.21367 1.00221 1.01144 0.94156 1.21157 0.93850 0.95323 0.98804 0.92863 0.85466 0.72709 0.83015 0.72927 0.85399 0.86449 0.83901 0.84008 0.85771 0.86424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -45.84 9.34 21.45 0.20 -45.64 16 2 C 0.05 2.46 5.25 84.65 0.44 2.90 16 3 Si 0.94 41.52 29.54 68.60 2.03 43.55 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.56 -29.18 7.58 25.60 0.19 -28.98 16 8 H 0.06 3.11 7.82 -2.91 -0.02 3.09 16 9 C 0.24 11.98 2.09 29.10 0.06 12.04 16 10 H 0.03 1.43 6.53 -2.39 -0.02 1.42 16 11 O -0.31 -15.34 7.89 -92.37 -0.73 -16.07 16 12 C 0.18 7.82 6.57 22.48 0.15 7.97 16 13 C -0.22 -8.71 9.92 22.48 0.22 -8.49 16 14 C 0.16 5.36 6.70 22.48 0.15 5.51 16 15 O -0.50 -13.10 13.50 -92.32 -1.25 -14.35 16 16 C -0.23 -7.00 9.92 22.48 0.22 -6.77 16 17 C 0.16 5.45 6.70 22.48 0.15 5.61 16 18 O -0.50 -14.58 13.50 -92.39 -1.25 -15.83 16 19 C -0.25 -10.36 8.57 22.48 0.19 -10.17 16 20 C -0.07 -3.09 4.79 -19.87 -0.10 -3.18 16 21 C -0.14 -5.67 9.71 22.27 0.22 -5.46 16 22 C -0.14 -4.70 10.05 22.27 0.22 -4.48 16 23 C -0.14 -4.71 10.05 22.27 0.22 -4.49 16 24 C -0.15 -5.90 10.05 22.27 0.22 -5.68 16 25 C -0.07 -3.40 7.69 22.27 0.17 -3.23 16 26 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 27 H 0.13 4.88 8.06 -2.91 -0.02 4.86 16 28 H 0.41 6.39 9.06 -74.06 -0.67 5.72 16 29 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 30 H 0.41 7.73 9.06 -74.06 -0.67 7.05 16 31 H 0.13 5.60 5.60 -2.91 -0.02 5.58 16 32 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 33 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 34 H 0.14 3.71 8.06 -2.91 -0.02 3.68 16 35 H 0.12 4.24 8.06 -2.91 -0.02 4.21 16 36 H 0.12 6.10 6.06 -2.91 -0.02 6.08 16 Total: -1.00 -64.20 311.52 1.55 -62.66 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: -0.21 Total: 32.58 kcal Atomic # 6 Polarization: -49.64 SS G_CDS: 2.75 Total: -46.89 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.20 Total: -45.64 kcal Atomic # 8 Polarization: -43.02 SS G_CDS: -3.22 Total: -46.25 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -64.20 1.55 -62.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225365587.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.483 kcal (2) G-P(sol) polarization free energy of solvation -64.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds